Wall clock time and date at job start Sat Apr 11 2020 05:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34777 * 119.99620 * 2 1 4 4 O 1.21287 * 119.99473 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.00428 * 359.97438 * 3 2 1 6 6 S 1.81002 * 109.47066 * 180.02562 * 5 3 2 7 7 C 1.76203 * 99.99811 * 180.02562 * 6 5 3 8 8 H 1.08000 * 119.99956 * 0.02562 * 7 6 5 9 9 C 1.38796 * 120.00020 * 179.97438 * 7 6 5 10 10 N 1.31627 * 120.00010 * 179.97438 * 9 7 6 11 11 Si 1.86806 * 119.99940 * 0.02562 * 9 7 6 12 12 H 1.48502 * 109.47463 * 89.99500 * 11 9 7 13 13 H 1.48496 * 109.47024 * 209.99915 * 11 9 7 14 14 H 1.48499 * 109.46952 * 329.99365 * 11 9 7 15 15 C 1.46492 * 119.99903 * 179.97438 * 2 1 3 16 16 C 1.53772 * 113.69437 * 17.98440 * 15 2 1 17 17 C 1.53786 * 87.08360 * 89.12713 * 16 15 2 18 18 N 1.46497 * 113.69348 * 270.87813 * 17 16 15 19 19 C 1.34777 * 119.99696 * 256.50615 * 18 17 16 20 20 O 1.21500 * 120.00080 * 359.97438 * 19 18 17 21 21 C 1.48276 * 119.99810 * 179.97438 * 19 18 17 22 22 C 1.47486 * 128.71262 * 179.70097 * 21 19 18 23 23 N 1.30650 * 102.71833 * 179.90870 * 22 21 19 24 24 O 1.20839 * 109.61643 * 0.36177 * 23 22 21 25 25 N 1.20901 * 115.90786 * 359.74437 * 24 23 22 26 26 C 1.53778 * 113.61794 * 115.52602 * 15 2 1 27 27 H 1.09000 * 109.47150 * 264.65425 * 1 2 3 28 28 H 1.09004 * 109.47069 * 24.64870 * 1 2 3 29 29 H 1.09000 * 109.46797 * 144.64820 * 1 2 3 30 30 H 1.09004 * 109.47054 * 300.00311 * 5 3 2 31 31 H 1.09001 * 109.46761 * 60.00146 * 5 3 2 32 32 H 0.97001 * 119.99529 * 180.02562 * 10 9 7 33 33 H 1.09010 * 112.84989 * 246.71760 * 15 2 1 34 34 H 1.09004 * 113.62083 * 203.67583 * 16 15 2 35 35 H 1.08999 * 113.61731 * 334.57874 * 16 15 2 36 36 H 1.08998 * 113.61553 * 139.98060 * 17 16 15 37 37 H 0.96998 * 120.00325 * 76.49955 * 18 17 16 38 38 H 1.07993 * 128.64185 * 0.02692 * 22 21 19 39 39 H 1.09004 * 113.61249 * 25.33846 * 26 15 2 40 40 H 1.09000 * 113.61871 * 156.25136 * 26 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3853 2.4724 -0.0006 6 16 2.5616 3.8481 -0.0012 7 6 1.4414 5.2083 -0.0010 8 1 0.3762 5.0305 -0.0002 9 6 1.9282 6.5081 -0.0009 10 7 1.0914 7.5242 -0.0012 11 14 3.7707 6.8155 -0.0015 12 1 4.2585 6.8972 -1.4018 13 1 4.0597 8.0927 0.6987 14 1 4.4588 5.7009 0.6980 15 6 2.1975 -1.2687 0.0006 16 6 1.3466 -2.4737 -0.4337 17 6 1.7820 -2.1618 -1.8752 18 7 0.8964 -1.2225 -2.5676 19 6 0.0192 -1.6751 -3.4854 20 8 -0.0366 -2.8620 -3.7388 21 6 -0.8776 -0.7244 -4.1858 22 6 -1.8943 -1.0045 -5.2168 23 7 -2.3777 0.1818 -5.4738 24 8 -1.8135 1.0059 -4.7936 25 7 -0.9620 0.5816 -4.0474 26 6 3.0313 -1.4992 -1.2708 27 1 -0.3633 -0.0957 1.0232 28 1 -0.3633 0.9341 -0.4286 29 1 -0.3633 -0.8382 -0.5946 30 1 0.7590 2.5299 -0.8908 31 1 0.7584 2.5303 0.8892 32 1 1.4316 8.4326 -0.0015 33 1 2.7530 -1.4363 0.9234 34 1 1.7192 -3.4282 -0.0618 35 1 0.2787 -2.3390 -0.2613 36 1 2.0021 -3.0505 -2.4668 37 1 0.9411 -0.2749 -2.3655 38 1 -2.1717 -1.9541 -5.6500 39 1 3.3236 -0.5777 -1.7743 40 1 3.8645 -2.1873 -1.1277 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701907980.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:31 Heat of formation + Delta-G solvation = 67.413563 kcal Electronic energy + Delta-G solvation = -27440.679668 eV Core-core repulsion = 23388.187019 eV Total energy + Delta-G solvation = -4052.492649 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -47.99845 -42.14323 -40.60932 -39.05692 -35.96297 -35.72727 -35.57575 -34.66667 -34.22821 -30.84701 -28.49356 -27.87939 -27.62780 -26.36909 -25.37862 -24.90191 -22.53159 -21.50235 -20.14916 -20.11123 -19.72031 -19.24241 -18.83003 -17.97286 -17.59039 -17.22022 -17.00569 -16.95074 -16.34268 -16.09428 -15.83380 -15.67970 -15.27393 -14.94124 -14.61491 -14.33125 -13.91019 -13.88904 -13.58297 -13.47836 -13.34520 -13.03747 -13.00604 -12.91466 -12.82778 -12.55993 -12.48372 -11.97248 -11.89404 -11.87584 -11.71673 -11.54441 -11.16953 -10.88002 -10.52878 -10.32708 -9.72971 -8.99570 -8.50991 -6.21742 -0.42768 0.28795 0.96601 1.31083 1.39417 1.45126 1.50046 1.53232 1.68048 2.00075 2.24646 2.27869 2.39738 2.67750 2.82896 2.87537 3.25470 3.41829 3.54454 3.66832 3.73330 3.83266 4.01075 4.11750 4.17290 4.39813 4.41644 4.46032 4.56725 4.68772 4.74739 4.75868 4.90593 4.99068 5.00514 5.18610 5.60909 5.71296 6.04240 6.12167 6.15462 6.66549 6.94296 7.05729 7.29569 8.61490 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.010928 B = 0.003659 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.521262 B = 7650.164394 C = 9562.799832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.596 5.596 3 C 0.535 3.465 4 O -0.548 6.548 5 C -0.109 4.109 6 S -0.172 6.172 7 C -0.528 4.528 8 H 0.061 0.939 9 C 0.048 3.952 10 N -0.917 5.917 11 Si 0.912 3.088 12 H -0.263 1.263 13 H -0.260 1.260 14 H -0.236 1.236 15 C 0.111 3.889 16 C -0.134 4.134 17 C 0.116 3.884 18 N -0.691 5.691 19 C 0.615 3.385 20 O -0.528 6.528 21 C -0.058 4.058 22 C 0.059 3.941 23 N -0.363 5.363 24 O 0.334 5.666 25 N -0.327 5.327 26 C -0.148 4.148 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.277 0.723 33 H 0.089 0.911 34 H 0.139 0.861 35 H 0.089 0.911 36 H 0.118 0.882 37 H 0.407 0.593 38 H 0.262 0.738 39 H 0.054 0.946 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.668 -25.473 -5.506 26.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.331 5.331 3 C 0.322 3.678 4 O -0.425 6.425 5 C -0.260 4.260 6 S 0.055 5.945 7 C -0.676 4.676 8 H 0.080 0.920 9 C -0.158 4.158 10 N -0.555 5.555 11 Si 0.734 3.266 12 H -0.188 1.188 13 H -0.184 1.184 14 H -0.160 1.160 15 C 0.008 3.992 16 C -0.172 4.172 17 C 0.012 3.988 18 N -0.343 5.343 19 C 0.398 3.602 20 O -0.403 6.403 21 C -0.224 4.224 22 C -0.127 4.127 23 N -0.089 5.089 24 O 0.110 5.890 25 N -0.046 5.046 26 C -0.186 4.186 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.108 0.892 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.157 0.843 35 H 0.108 0.892 36 H 0.135 0.865 37 H 0.244 0.756 38 H 0.278 0.722 39 H 0.073 0.927 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.176 -24.976 -5.672 25.808 hybrid contribution -0.828 0.688 0.087 1.080 sum -4.004 -24.288 -5.586 25.242 Atomic orbital electron populations 1.22216 0.77934 1.04133 1.03970 1.47583 1.07642 1.04310 1.73549 1.19923 0.87317 0.84832 0.75748 1.90693 1.14898 1.87283 1.49655 1.23315 1.01897 0.93935 1.06838 1.84663 1.13537 0.98753 1.97548 1.22446 0.94370 0.92523 1.58214 0.92030 1.25529 1.02588 0.94764 0.92896 1.70016 1.36756 0.99530 1.49166 0.85896 0.80377 0.80110 0.80168 1.18782 1.18407 1.15985 1.22159 0.94745 0.83112 0.99170 1.23803 1.01442 0.98228 0.93712 1.22171 0.89908 0.92919 0.93834 1.45805 1.36850 1.12267 1.39330 1.16423 0.79220 0.85702 0.78817 1.90833 1.69285 1.15215 1.64972 1.26322 1.03095 0.90311 1.02660 1.28306 0.91278 0.99264 0.93889 1.75124 1.18319 1.00791 1.14687 1.85160 1.34227 1.34111 1.35507 1.75474 1.06254 1.12318 1.10564 1.23669 0.97402 1.01611 0.95937 0.90354 0.90680 0.89158 0.87327 0.87339 0.91401 0.89268 0.84272 0.89215 0.86453 0.75610 0.72239 0.92676 0.85082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.99 8.64 127.77 1.10 2.09 16 2 N -0.60 -13.21 2.13 -819.65 -1.74 -14.95 16 3 C 0.53 17.43 7.39 87.66 0.65 18.07 16 4 O -0.55 -21.84 14.92 -3.05 -0.05 -21.88 16 5 C -0.11 -4.02 4.63 71.24 0.33 -3.69 16 6 S -0.17 -8.53 18.55 -56.49 -1.05 -9.58 16 7 C -0.53 -30.49 10.04 67.95 0.68 -29.81 16 8 H 0.06 3.76 8.03 -2.91 -0.02 3.74 16 9 C 0.05 2.78 5.50 84.86 0.47 3.25 16 10 N -0.92 -55.67 13.97 21.65 0.30 -55.37 16 11 Si 0.91 44.74 27.74 68.60 1.90 46.64 16 12 H -0.26 -12.62 7.11 99.48 0.71 -11.91 16 13 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 14 H -0.24 -11.50 6.74 99.48 0.67 -10.83 16 15 C 0.11 1.94 4.11 45.52 0.19 2.13 16 16 C -0.13 -1.43 7.16 31.12 0.22 -1.20 16 17 C 0.12 1.68 4.26 45.52 0.19 1.88 16 18 N -0.69 -12.26 3.77 -442.48 -1.67 -13.93 16 19 C 0.62 11.56 7.85 86.91 0.68 12.24 16 20 O -0.53 -11.37 16.70 -3.72 -0.06 -11.43 16 21 C -0.06 -1.06 7.56 44.29 0.34 -0.73 16 22 C 0.06 0.82 12.63 87.31 1.10 1.92 16 23 N -0.36 -6.62 12.22 -61.43 -0.75 -7.37 16 24 O 0.33 7.04 11.65 140.85 1.64 8.68 16 25 N -0.33 -7.02 12.13 -52.05 -0.63 -7.65 16 26 C -0.15 -2.55 7.14 31.12 0.22 -2.33 16 27 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.07 1.38 6.25 -2.39 -0.01 1.36 16 29 H 0.09 1.20 4.67 -2.39 -0.01 1.19 16 30 H 0.11 3.75 7.42 -2.39 -0.02 3.73 16 31 H 0.11 3.76 8.11 -2.39 -0.02 3.74 16 32 H 0.28 15.55 8.31 -92.71 -0.77 14.77 16 33 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 34 H 0.14 0.76 8.14 -2.38 -0.02 0.74 16 35 H 0.09 0.93 5.79 -2.39 -0.01 0.92 16 36 H 0.12 1.60 7.56 -2.39 -0.02 1.58 16 37 H 0.41 8.25 6.75 -92.71 -0.63 7.62 16 38 H 0.26 1.46 8.06 -2.91 -0.02 1.44 16 39 H 0.05 1.36 7.29 -2.38 -0.02 1.34 16 40 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -75.08 352.43 4.53 -70.56 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 0.45 Total: 12.46 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: 6.18 Total: 3.82 kcal Atomic # 7 Polarization: -94.78 SS G_CDS: -4.49 Total: -99.27 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: 1.53 Total: -24.63 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.90 Total: 46.64 kcal Atomic # 16 Polarization: -8.53 SS G_CDS: -1.05 Total: -9.58 kcal Total: -75.08 4.53 -70.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701907980.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.971 kcal (2) G-P(sol) polarization free energy of solvation -75.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds