Wall clock time and date at job start Sat Apr 11 2020 05:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.87954 * 2 1 4 4 C 1.54328 * 109.88401 * 238.97794 * 2 1 3 5 5 H 1.09003 * 110.71995 * 336.93536 * 4 2 1 6 6 N 1.46500 * 110.71801 * 100.02443 * 4 2 1 7 7 C 1.34772 * 120.00383 * 202.56076 * 6 4 2 8 8 O 1.21281 * 119.99720 * 0.02562 * 7 6 4 9 9 C 1.50694 * 120.00401 * 180.02562 * 7 6 4 10 10 S 1.81005 * 109.47415 * 179.97438 * 9 7 6 11 11 C 1.76198 * 99.99931 * 179.97438 * 10 9 7 12 12 H 1.07999 * 120.00293 * 359.97438 * 11 10 9 13 13 C 1.38805 * 119.99843 * 180.02562 * 11 10 9 14 14 N 1.31634 * 119.99846 * 359.71985 * 13 11 10 15 15 Si 1.86795 * 120.00110 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47163 * 59.99666 * 15 13 11 17 17 H 1.48505 * 109.47234 * 179.97438 * 15 13 11 18 18 H 1.48492 * 109.47124 * 299.99689 * 15 13 11 19 19 C 1.55151 * 103.10562 * 218.47942 * 4 2 1 20 20 C 1.55131 * 101.48478 * 35.28338 * 19 4 2 21 21 N 1.47026 * 109.88155 * 121.17316 * 2 1 3 22 22 C 1.34769 * 125.64927 * 298.32261 * 21 2 1 23 23 O 1.21505 * 119.99987 * 359.97438 * 22 21 2 24 24 C 1.48276 * 120.00508 * 180.02562 * 22 21 2 25 25 C 1.47491 * 128.71752 * 179.69510 * 24 22 21 26 26 N 1.30646 * 102.71699 * 179.90716 * 25 24 22 27 27 O 1.20838 * 109.62000 * 0.36712 * 26 25 24 28 28 N 1.20899 * 115.90869 * 359.74318 * 27 26 25 29 29 H 1.08993 * 109.47316 * 181.02192 * 1 2 3 30 30 H 1.09005 * 109.46814 * 301.01980 * 1 2 3 31 31 H 1.09006 * 109.46995 * 61.01719 * 1 2 3 32 32 H 0.97003 * 119.99680 * 22.56703 * 6 4 2 33 33 H 1.09002 * 109.47362 * 59.99907 * 9 7 6 34 34 H 1.09005 * 109.46865 * 300.00021 * 9 7 6 35 35 H 0.97000 * 120.00210 * 180.02562 * 14 13 11 36 36 H 1.08997 * 111.00303 * 153.48330 * 19 4 2 37 37 H 1.08996 * 111.00838 * 277.34194 * 19 4 2 38 38 H 1.09000 * 110.41942 * 204.29197 * 20 19 4 39 39 H 1.09000 * 110.29660 * 82.08502 * 20 19 4 40 40 H 1.08003 * 128.63787 * 0.04210 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0549 -0.7479 -1.2437 5 1 1.3039 -1.4416 -1.6220 6 7 2.4554 0.1990 -2.2872 7 6 2.5055 -0.1978 -3.5742 8 8 2.2185 -1.3388 -3.8686 9 6 2.9181 0.7761 -4.6476 10 16 2.8875 -0.0512 -6.2572 11 6 3.3959 1.2792 -7.2947 12 1 3.6149 2.2456 -6.8653 13 6 3.5138 1.0854 -8.6641 14 7 3.2511 -0.0938 -9.1869 15 14 4.0534 2.4954 -9.7639 16 1 5.4023 2.9581 -9.3496 17 1 4.1009 2.0330 -11.1743 18 1 3.0868 3.6160 -9.6422 19 6 3.2869 -1.5169 -0.6978 20 6 2.8145 -1.8805 0.7343 21 7 2.0300 -0.7157 1.1830 22 6 1.8085 -0.3647 2.4652 23 8 1.1446 0.6208 2.7193 24 6 2.3758 -1.1803 3.5658 25 6 2.2612 -0.9726 5.0216 26 7 2.9415 -1.9755 5.5096 27 8 3.3833 -2.6444 4.6053 28 7 3.1129 -2.2679 3.4888 29 1 -0.3633 -1.0274 0.0183 30 1 -0.3633 0.5296 0.8808 31 1 -0.3633 0.4980 -0.8990 32 1 2.6847 1.1117 -2.0519 33 1 3.9266 1.1360 -4.4436 34 1 2.2269 1.6189 -4.6586 35 1 3.3339 -0.2294 -10.1438 36 1 3.4810 -2.4128 -1.2875 37 1 4.1664 -0.8737 -0.6662 38 1 3.6716 -2.0358 1.3896 39 1 2.1890 -2.7728 0.7110 40 1 1.7421 -0.1881 5.5520 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001702682531.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:34 Heat of formation + Delta-G solvation = 57.900912 kcal Electronic energy + Delta-G solvation = -26291.779580 eV Core-core repulsion = 22238.874432 eV Total energy + Delta-G solvation = -4052.905148 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -47.43745 -40.94332 -39.35947 -37.82705 -35.37761 -35.03815 -34.21220 -32.46348 -31.81057 -31.33937 -29.06159 -26.63471 -25.77276 -25.38868 -24.65384 -23.16751 -21.81119 -20.68309 -19.99424 -19.55499 -18.61907 -17.96416 -17.83630 -17.12495 -16.29074 -16.15305 -15.81189 -15.27353 -15.00421 -14.83533 -14.64900 -14.14674 -13.99375 -13.62510 -13.49572 -13.30170 -13.07712 -12.83570 -12.66452 -12.57574 -12.18748 -12.12443 -11.90183 -11.85965 -11.45691 -11.32994 -11.12593 -11.07908 -11.06449 -10.85250 -10.78774 -9.86839 -9.54683 -9.31225 -9.10963 -9.04564 -8.29694 -6.54766 -6.25204 -3.96351 0.20703 0.80076 1.87762 2.38227 2.78613 2.92894 2.94221 2.99512 3.21166 3.24542 3.27156 3.32342 3.61053 3.91708 4.10173 4.16990 4.23761 4.31964 4.63289 4.74822 4.77650 4.80458 4.93227 5.05702 5.10075 5.21171 5.28958 5.36737 5.55108 5.58356 5.71337 5.75284 5.81362 5.85868 5.91569 6.07496 6.44571 6.74300 7.31657 7.53164 7.56213 7.87855 8.31355 8.46666 9.20134 10.82089 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.032667 B = 0.001903 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.920858 B =14706.257413 C =14968.143246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.133 3.867 3 H 0.089 0.911 4 C 0.142 3.858 5 H 0.110 0.890 6 N -0.730 5.730 7 C 0.536 3.464 8 O -0.513 6.513 9 C -0.154 4.154 10 S -0.058 6.058 11 C -0.537 4.537 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 C -0.145 4.145 20 C 0.094 3.906 21 N -0.594 5.594 22 C 0.621 3.379 23 O -0.511 6.511 24 C -0.037 4.037 25 C 0.039 3.961 26 N -0.352 5.352 27 O 0.342 5.658 28 N -0.317 5.317 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.400 0.600 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.269 0.731 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.665 -1.185 27.559 27.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.030 3.970 3 H 0.106 0.894 4 C 0.035 3.965 5 H 0.128 0.872 6 N -0.385 5.385 7 C 0.323 3.677 8 O -0.386 6.386 9 C -0.305 4.305 10 S 0.168 5.832 11 C -0.685 4.685 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.502 5.502 15 Si 0.745 3.255 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.199 1.199 19 C -0.185 4.185 20 C -0.028 4.028 21 N -0.328 5.328 22 C 0.405 3.595 23 O -0.385 6.385 24 C -0.203 4.203 25 C -0.147 4.147 26 N -0.075 5.075 27 O 0.116 5.884 28 N -0.038 5.038 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.235 0.765 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.079 0.921 36 H 0.117 0.883 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.098 0.902 40 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -1.879 -3.625 27.220 27.525 hybrid contribution 0.319 3.419 -0.309 3.448 sum -1.560 -0.207 26.911 26.957 Atomic orbital electron populations 1.22165 0.93270 1.03049 1.03720 1.21829 0.95612 0.96447 0.83155 0.89352 1.21917 0.96933 0.91400 0.86253 0.87173 1.45954 1.71742 1.14496 1.06311 1.20338 0.76228 0.88916 0.82227 1.90711 1.46607 1.19726 1.81562 1.23538 1.04212 1.01849 1.00868 1.85393 1.89161 1.16895 0.91731 1.22821 1.53280 0.98201 0.94222 0.90947 1.24994 0.94861 0.96571 0.97136 1.70003 1.45594 1.21773 1.12874 0.86221 0.79186 0.81182 0.78898 1.19934 1.20796 1.19924 1.23316 0.98525 1.02476 0.94143 1.22679 0.95977 0.88029 0.96149 1.48263 1.51555 1.28856 1.04153 1.15990 0.80427 0.83263 0.79796 1.90856 1.39184 1.25835 1.82598 1.26143 1.02240 0.95769 0.96116 1.27750 0.98835 0.98509 0.89642 1.75103 1.11729 1.05572 1.15077 1.85113 1.53750 1.42856 1.06707 1.75490 1.11843 1.11618 1.04811 0.91960 0.90846 0.90604 0.76528 0.89110 0.89076 0.92090 0.88318 0.89865 0.88952 0.90202 0.75551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.09 37.16 0.34 -1.12 16 2 C 0.13 1.17 3.21 -66.95 -0.22 0.96 16 3 H 0.09 0.75 7.70 -51.93 -0.40 0.35 16 4 C 0.14 1.43 2.79 -66.10 -0.18 1.24 16 5 H 0.11 1.28 7.33 -51.93 -0.38 0.90 16 6 N -0.73 -8.41 5.19 -52.03 -0.27 -8.68 16 7 C 0.54 9.03 7.85 -10.99 -0.09 8.94 16 8 O -0.51 -10.61 15.55 5.56 0.09 -10.52 16 9 C -0.15 -2.90 6.16 36.00 0.22 -2.68 16 10 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 11 C -0.54 -14.93 9.50 30.94 0.29 -14.64 16 12 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 13 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 14 N -0.87 -25.70 13.22 55.49 0.73 -24.97 16 15 Si 0.92 21.04 29.55 -169.99 -5.02 16.02 16 16 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 19 C -0.15 -1.30 6.79 -24.47 -0.17 -1.46 16 20 C 0.09 0.73 6.23 -2.41 -0.02 0.72 16 21 N -0.59 -5.23 3.07 -163.82 -0.50 -5.73 16 22 C 0.62 5.94 7.67 -12.14 -0.09 5.85 16 23 O -0.51 -5.97 16.10 5.36 0.09 -5.88 16 24 C -0.04 -0.30 7.33 -80.07 -0.59 -0.89 16 25 C 0.04 0.24 12.63 -14.29 -0.18 0.06 16 26 N -0.35 -2.55 12.22 30.72 0.38 -2.18 16 27 O 0.34 2.54 11.65 27.27 0.32 2.86 16 28 N -0.32 -2.48 9.70 33.50 0.33 -2.16 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.72 6.91 -51.93 -0.36 0.36 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.40 3.55 8.34 -40.82 -0.34 3.21 16 33 H 0.09 1.58 8.14 -51.91 -0.42 1.15 16 34 H 0.09 1.58 8.14 -51.91 -0.42 1.16 16 35 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 0.69 6.31 -51.93 -0.33 0.36 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.23 0.71 8.06 -52.48 -0.42 0.29 16 LS Contribution 360.63 15.07 5.43 5.43 Total: -1.00 -34.12 360.63 -6.15 -40.27 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -4.73 Total: 0.33 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -0.77 Total: -1.05 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: 0.66 Total: -43.72 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: 0.49 Total: -13.55 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.12 -6.15 -40.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001702682531.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.176 kcal (2) G-P(sol) polarization free energy of solvation -34.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds