Wall clock time and date at job start Sat Apr 11 2020 05:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.87954 * 2 1 4 4 C 1.54328 * 109.88401 * 238.97794 * 2 1 3 5 5 H 1.09003 * 110.71995 * 336.93536 * 4 2 1 6 6 N 1.46500 * 110.71801 * 100.02443 * 4 2 1 7 7 C 1.34772 * 120.00383 * 202.56076 * 6 4 2 8 8 O 1.21281 * 119.99720 * 0.02562 * 7 6 4 9 9 C 1.50694 * 120.00401 * 180.02562 * 7 6 4 10 10 S 1.81005 * 109.47415 * 179.97438 * 9 7 6 11 11 C 1.76198 * 99.99931 * 179.97438 * 10 9 7 12 12 H 1.07999 * 120.00293 * 359.97438 * 11 10 9 13 13 C 1.38805 * 119.99843 * 180.02562 * 11 10 9 14 14 N 1.31634 * 119.99846 * 359.71985 * 13 11 10 15 15 Si 1.86795 * 120.00110 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47163 * 59.99666 * 15 13 11 17 17 H 1.48505 * 109.47234 * 179.97438 * 15 13 11 18 18 H 1.48492 * 109.47124 * 299.99689 * 15 13 11 19 19 C 1.55151 * 103.10562 * 218.47942 * 4 2 1 20 20 C 1.55131 * 101.48478 * 35.28338 * 19 4 2 21 21 N 1.47026 * 109.88155 * 121.17316 * 2 1 3 22 22 C 1.34769 * 125.64927 * 298.32261 * 21 2 1 23 23 O 1.21505 * 119.99987 * 359.97438 * 22 21 2 24 24 C 1.48276 * 120.00508 * 180.02562 * 22 21 2 25 25 C 1.47491 * 128.71752 * 179.69510 * 24 22 21 26 26 N 1.30646 * 102.71699 * 179.90716 * 25 24 22 27 27 O 1.20838 * 109.62000 * 0.36712 * 26 25 24 28 28 N 1.20899 * 115.90869 * 359.74318 * 27 26 25 29 29 H 1.08993 * 109.47316 * 181.02192 * 1 2 3 30 30 H 1.09005 * 109.46814 * 301.01980 * 1 2 3 31 31 H 1.09006 * 109.46995 * 61.01719 * 1 2 3 32 32 H 0.97003 * 119.99680 * 22.56703 * 6 4 2 33 33 H 1.09002 * 109.47362 * 59.99907 * 9 7 6 34 34 H 1.09005 * 109.46865 * 300.00021 * 9 7 6 35 35 H 0.97000 * 120.00210 * 180.02562 * 14 13 11 36 36 H 1.08997 * 111.00303 * 153.48330 * 19 4 2 37 37 H 1.08996 * 111.00838 * 277.34194 * 19 4 2 38 38 H 1.09000 * 110.41942 * 204.29197 * 20 19 4 39 39 H 1.09000 * 110.29660 * 82.08502 * 20 19 4 40 40 H 1.08003 * 128.63787 * 0.04210 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0549 -0.7479 -1.2437 5 1 1.3039 -1.4416 -1.6220 6 7 2.4554 0.1990 -2.2872 7 6 2.5055 -0.1978 -3.5742 8 8 2.2185 -1.3388 -3.8686 9 6 2.9181 0.7761 -4.6476 10 16 2.8875 -0.0512 -6.2572 11 6 3.3959 1.2792 -7.2947 12 1 3.6149 2.2456 -6.8653 13 6 3.5138 1.0854 -8.6641 14 7 3.2511 -0.0938 -9.1869 15 14 4.0534 2.4954 -9.7639 16 1 5.4023 2.9581 -9.3496 17 1 4.1009 2.0330 -11.1743 18 1 3.0868 3.6160 -9.6422 19 6 3.2869 -1.5169 -0.6978 20 6 2.8145 -1.8805 0.7343 21 7 2.0300 -0.7157 1.1830 22 6 1.8085 -0.3647 2.4652 23 8 1.1446 0.6208 2.7193 24 6 2.3758 -1.1803 3.5658 25 6 2.2612 -0.9726 5.0216 26 7 2.9415 -1.9755 5.5096 27 8 3.3833 -2.6444 4.6053 28 7 3.1129 -2.2679 3.4888 29 1 -0.3633 -1.0274 0.0183 30 1 -0.3633 0.5296 0.8808 31 1 -0.3633 0.4980 -0.8990 32 1 2.6847 1.1117 -2.0519 33 1 3.9266 1.1360 -4.4436 34 1 2.2269 1.6189 -4.6586 35 1 3.3339 -0.2294 -10.1438 36 1 3.4810 -2.4128 -1.2875 37 1 4.1664 -0.8737 -0.6662 38 1 3.6716 -2.0358 1.3896 39 1 2.1890 -2.7728 0.7110 40 1 1.7421 -0.1881 5.5520 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001702682531.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:33 Heat of formation + Delta-G solvation = 33.668100 kcal Electronic energy + Delta-G solvation = -26292.830394 eV Core-core repulsion = 22238.874432 eV Total energy + Delta-G solvation = -4053.955962 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -47.99550 -41.76038 -40.51785 -38.76878 -36.01523 -35.61526 -35.23609 -34.56776 -32.56996 -32.32940 -30.37336 -27.68137 -27.26150 -26.46210 -25.23315 -23.86230 -22.69994 -21.78858 -20.82140 -20.11913 -19.79158 -19.19669 -18.62383 -18.11936 -17.50830 -17.08974 -16.86337 -16.66290 -16.37499 -15.88643 -15.79555 -15.33443 -14.89837 -14.81097 -14.47926 -14.34480 -14.09550 -13.87378 -13.65278 -13.43935 -13.26669 -13.15489 -12.86322 -12.85376 -12.66398 -12.60402 -12.45813 -12.34241 -11.95879 -11.84874 -11.73823 -11.60992 -11.11724 -10.97426 -10.26078 -10.18875 -10.01153 -8.64258 -8.33470 -6.10738 -0.41492 0.29006 1.12898 1.31217 1.44450 1.48543 1.57765 1.59734 1.68521 2.14397 2.28094 2.32293 2.43962 2.74925 3.00707 3.17931 3.32095 3.38367 3.58787 3.71153 3.85618 3.90075 4.06047 4.08113 4.20723 4.33352 4.41362 4.47064 4.54467 4.60332 4.63973 4.83295 4.93800 4.98336 5.06749 5.16891 5.41454 5.43298 6.01978 6.20837 6.44410 6.59282 7.08171 7.21161 7.31819 8.75182 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.032667 B = 0.001903 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.920858 B =14706.257413 C =14968.143246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.139 3.861 3 H 0.098 0.902 4 C 0.141 3.859 5 H 0.096 0.904 6 N -0.704 5.704 7 C 0.542 3.458 8 O -0.557 6.557 9 C -0.131 4.131 10 S -0.148 6.148 11 C -0.547 4.547 12 H 0.083 0.917 13 C 0.013 3.987 14 N -0.910 5.910 15 Si 0.996 3.004 16 H -0.263 1.263 17 H -0.280 1.280 18 H -0.262 1.262 19 C -0.140 4.140 20 C 0.101 3.899 21 N -0.594 5.594 22 C 0.622 3.378 23 O -0.534 6.534 24 C -0.051 4.051 25 C 0.054 3.946 26 N -0.362 5.362 27 O 0.341 5.659 28 N -0.319 5.319 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.417 0.583 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.271 0.729 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.124 0.629 29.178 29.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.036 3.964 3 H 0.116 0.884 4 C 0.035 3.965 5 H 0.114 0.886 6 N -0.359 5.359 7 C 0.328 3.672 8 O -0.434 6.434 9 C -0.282 4.282 10 S 0.079 5.921 11 C -0.695 4.695 12 H 0.101 0.899 13 C -0.191 4.191 14 N -0.547 5.547 15 Si 0.818 3.182 16 H -0.187 1.187 17 H -0.205 1.205 18 H -0.187 1.187 19 C -0.179 4.179 20 C -0.021 4.021 21 N -0.327 5.327 22 C 0.408 3.592 23 O -0.410 6.410 24 C -0.216 4.216 25 C -0.131 4.131 26 N -0.086 5.086 27 O 0.116 5.884 28 N -0.038 5.038 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.255 0.745 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.080 0.920 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.118 0.882 39 H 0.104 0.896 40 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -1.325 -1.794 28.877 28.963 hybrid contribution 0.130 2.837 -0.653 2.914 sum -1.195 1.043 28.224 28.269 Atomic orbital electron populations 1.22115 0.93228 1.02928 1.03477 1.21733 0.95524 0.96645 0.82527 0.88380 1.21953 0.97363 0.91108 0.86059 0.88599 1.45622 1.69891 1.15596 1.04757 1.19963 0.76066 0.87770 0.83370 1.90706 1.48944 1.21315 1.82438 1.23380 1.06097 1.01877 0.96890 1.85548 1.89519 1.19722 0.97267 1.23178 1.52960 0.98504 0.94833 0.89906 1.26101 0.94724 0.99434 0.98882 1.70170 1.47013 1.24268 1.13228 0.85036 0.79206 0.77515 0.76455 1.18713 1.20526 1.18710 1.23249 0.98080 1.02033 0.94569 1.22662 0.96216 0.87850 0.95352 1.48281 1.51411 1.28982 1.04065 1.16098 0.80028 0.83041 0.80041 1.90844 1.40280 1.26875 1.82962 1.26036 1.02969 0.96029 0.96532 1.28216 0.97733 0.98370 0.88827 1.75123 1.12393 1.06059 1.15062 1.85114 1.53797 1.42933 1.06588 1.75462 1.11656 1.11530 1.05158 0.92064 0.91487 0.90380 0.74501 0.87111 0.87123 0.92034 0.89176 0.89204 0.88229 0.89613 0.72830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 9.09 71.98 0.65 -1.99 16 2 C 0.14 2.21 3.21 45.34 0.15 2.36 16 3 H 0.10 1.42 7.70 -2.39 -0.02 1.40 16 4 C 0.14 2.66 2.79 46.18 0.13 2.79 16 5 H 0.10 2.18 7.33 -2.39 -0.02 2.17 16 6 N -0.70 -14.93 5.19 -436.93 -2.27 -17.20 16 7 C 0.54 17.79 7.85 87.66 0.69 18.48 16 8 O -0.56 -23.34 15.55 -3.03 -0.05 -23.39 16 9 C -0.13 -4.80 6.16 71.23 0.44 -4.36 16 10 S -0.15 -7.88 20.57 -56.49 -1.16 -9.04 16 11 C -0.55 -30.41 9.50 67.96 0.65 -29.77 16 12 H 0.08 4.25 7.80 -2.91 -0.02 4.23 16 13 C 0.01 0.75 5.49 84.86 0.47 1.22 16 14 N -0.91 -55.02 13.22 21.65 0.29 -54.73 16 15 Si 1.00 42.80 29.55 68.60 2.03 44.83 16 16 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 17 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 18 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 19 C -0.14 -2.31 6.79 32.06 0.22 -2.09 16 20 C 0.10 1.42 6.23 86.93 0.54 1.96 16 21 N -0.59 -9.47 3.07 -790.50 -2.42 -11.89 16 22 C 0.62 10.91 7.67 86.92 0.67 11.58 16 23 O -0.53 -11.65 16.10 -3.73 -0.06 -11.71 16 24 C -0.05 -0.73 7.33 44.29 0.32 -0.41 16 25 C 0.05 0.56 12.63 87.31 1.10 1.67 16 26 N -0.36 -4.63 12.22 -61.41 -0.75 -5.38 16 27 O 0.34 4.59 11.65 140.86 1.64 6.24 16 28 N -0.32 -4.51 9.70 -52.03 -0.50 -5.02 16 29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.07 1.23 6.91 -2.38 -0.02 1.21 16 31 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.42 6.20 8.34 -92.71 -0.77 5.42 16 33 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 34 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 35 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 36 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.10 1.30 6.31 -2.39 -0.02 1.29 16 39 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.26 0.90 8.06 -2.91 -0.02 0.88 16 Total: -1.00 -75.33 360.63 3.09 -72.24 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 0.33 Total: 13.62 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: 6.02 Total: 1.44 kcal Atomic # 7 Polarization: -88.56 SS G_CDS: -5.66 Total: -94.22 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: 1.53 Total: -28.87 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 16 Polarization: -7.88 SS G_CDS: -1.16 Total: -9.04 kcal Total: -75.33 3.09 -72.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001702682531.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.911 kcal (2) G-P(sol) polarization free energy of solvation -75.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds