Wall clock time and date at job start Sat Apr 11 2020 05:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46497 * 119.99794 * 2 1 4 4 C 1.52996 * 109.47562 * 275.36186 * 3 2 1 5 5 H 1.09000 * 112.77446 * 43.98854 * 4 3 2 6 6 C 1.53231 * 113.38887 * 273.27892 * 4 3 2 7 7 C 1.53503 * 83.43351 * 219.29139 * 6 4 3 8 8 N 1.47069 * 113.46809 * 174.76129 * 4 3 2 9 9 C 1.34776 * 136.05988 * 321.94795 * 8 4 3 10 10 O 1.21499 * 119.99925 * 354.64293 * 9 8 4 11 11 C 1.48277 * 119.99880 * 174.64482 * 9 8 4 12 12 C 1.47492 * 128.71079 * 179.70078 * 11 9 8 13 13 N 1.30646 * 102.71844 * 179.85118 * 12 11 9 14 14 O 1.20838 * 109.61417 * 0.42288 * 13 12 11 15 15 N 1.20905 * 115.91335 * 359.70047 * 14 13 12 16 16 C 1.34775 * 120.00210 * 180.02562 * 2 1 3 17 17 O 1.21278 * 120.00287 * 179.97438 * 16 2 1 18 18 C 1.50707 * 119.99907 * 359.97438 * 16 2 1 19 19 S 1.80994 * 109.47115 * 180.02562 * 18 16 2 20 20 C 1.76203 * 99.99953 * 180.02562 * 19 18 16 21 21 H 1.07998 * 119.99861 * 359.97438 * 20 19 18 22 22 C 1.38803 * 119.99853 * 180.02562 * 20 19 18 23 23 N 1.31632 * 119.99995 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99821 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47384 * 89.99521 * 24 22 20 26 26 H 1.48503 * 109.47064 * 209.99734 * 24 22 20 27 27 H 1.48503 * 109.47025 * 329.99530 * 24 22 20 28 28 H 1.08996 * 109.47673 * 85.60107 * 1 2 3 29 29 H 1.09002 * 109.46969 * 205.60117 * 1 2 3 30 30 H 1.08999 * 109.47133 * 325.59525 * 1 2 3 31 31 H 1.09008 * 109.46897 * 155.36176 * 3 2 1 32 32 H 1.09004 * 109.47004 * 35.37004 * 3 2 1 33 33 H 1.08997 * 114.33242 * 105.65635 * 6 4 3 34 34 H 1.09001 * 114.19651 * 332.91683 * 6 4 3 35 35 H 1.08997 * 113.46540 * 271.11637 * 7 6 4 36 36 H 1.08994 * 113.51795 * 140.68267 * 7 6 4 37 37 H 1.07999 * 128.63795 * 359.97438 * 12 11 9 38 38 H 1.09001 * 109.46757 * 300.00225 * 18 16 2 39 39 H 1.08997 * 109.46729 * 59.99921 * 18 16 2 40 40 H 0.97001 * 119.99434 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3357 1.7779 -1.4361 5 1 1.4116 1.6866 -2.0070 6 6 3.5613 1.2169 -2.1650 7 6 3.6569 2.6407 -2.7308 8 7 2.9519 3.1101 -1.5284 9 6 2.8987 4.2552 -0.8196 10 8 2.1243 4.3582 0.1109 11 6 3.7853 5.3892 -1.1755 12 6 3.8829 6.7176 -0.5422 13 7 4.8132 7.3046 -1.2471 14 8 5.2019 6.5542 -2.1108 15 7 4.6784 5.4647 -2.1391 16 6 2.1389 -1.1672 -0.0005 17 8 3.3517 -1.1672 -0.0010 18 6 1.3854 -2.4723 -0.0005 19 16 2.5616 -3.8480 -0.0005 20 6 1.4415 -5.2082 -0.0013 21 1 0.3762 -5.0305 -0.0012 22 6 1.9283 -6.5081 -0.0010 23 7 3.2267 -6.7246 -0.0006 24 14 0.7408 -7.9500 -0.0011 25 1 0.4264 -8.3323 -1.4011 26 1 1.3620 -9.1029 0.6993 27 1 -0.5100 -7.5613 0.6987 28 1 -0.3634 0.0788 -1.0246 29 1 -0.3633 -0.9268 0.4441 30 1 -0.3633 0.8479 0.5807 31 1 3.1881 1.1163 0.4285 32 1 1.6533 2.0024 0.5949 33 1 3.3312 0.4547 -2.9094 34 1 4.3852 0.9413 -1.5067 35 1 3.0884 2.7815 -3.6501 36 1 4.6793 3.0107 -2.8067 37 1 3.3256 7.1073 0.2968 38 1 0.7590 -2.5302 0.8897 39 1 0.7584 -2.5298 -0.8903 40 1 3.5668 -7.6331 -0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001719375880.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:48 Heat of formation + Delta-G solvation = 101.355237 kcal Electronic energy + Delta-G solvation = -26397.149062 eV Core-core repulsion = 22346.128235 eV Total energy + Delta-G solvation = -4051.020827 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -47.37391 -41.06088 -39.37019 -38.24868 -35.39066 -35.17960 -34.90390 -32.45565 -31.05180 -30.08624 -28.16789 -26.66906 -26.11569 -25.49584 -24.52539 -23.48216 -22.44004 -19.83335 -19.49446 -19.32911 -18.66316 -17.91675 -17.64538 -16.90347 -16.56120 -16.24392 -15.77776 -15.21333 -15.07737 -14.82853 -14.51307 -14.10177 -13.84125 -13.37796 -13.33169 -13.16635 -12.97908 -12.86767 -12.58895 -12.39351 -12.35351 -12.13803 -11.83587 -11.80636 -11.71244 -11.24945 -11.08858 -11.04982 -10.94420 -10.78929 -10.58912 -9.83495 -9.43714 -9.31332 -9.09236 -8.59802 -8.26320 -6.53347 -6.24516 -3.95226 0.28525 0.85921 1.88073 2.46849 2.82020 2.95250 2.98335 3.02852 3.20207 3.24030 3.28219 3.36377 3.58429 3.99379 4.17571 4.18253 4.31536 4.54617 4.63284 4.81992 4.85187 4.91872 4.99227 5.05647 5.10764 5.14575 5.26968 5.39862 5.44876 5.59033 5.66846 5.68661 5.80603 5.86228 6.00578 6.09465 6.51986 7.07601 7.41142 7.45176 7.56995 7.94354 8.32375 8.47901 9.21002 10.82835 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.032507 B = 0.002033 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.154026 B =13768.403240 C =14203.880666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.621 5.621 3 C 0.110 3.890 4 C 0.125 3.875 5 H 0.101 0.899 6 C -0.142 4.142 7 C 0.098 3.902 8 N -0.626 5.626 9 C 0.631 3.369 10 O -0.514 6.514 11 C -0.035 4.035 12 C 0.038 3.962 13 N -0.353 5.353 14 O 0.341 5.659 15 N -0.317 5.317 16 C 0.534 3.466 17 O -0.511 6.511 18 C -0.151 4.151 19 S -0.061 6.061 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.228 0.772 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.674 24.883 -4.962 25.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.358 5.358 3 C -0.014 4.014 4 C 0.022 3.978 5 H 0.119 0.881 6 C -0.180 4.180 7 C -0.025 4.025 8 N -0.361 5.361 9 C 0.417 3.583 10 O -0.388 6.388 11 C -0.201 4.201 12 C -0.148 4.148 13 N -0.076 5.076 14 O 0.115 5.885 15 N -0.037 5.037 16 C 0.322 3.678 17 O -0.385 6.385 18 C -0.301 4.301 19 S 0.166 5.834 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.116 0.884 34 H 0.126 0.874 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.245 0.755 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.325 25.251 -5.112 25.766 hybrid contribution -3.021 -0.976 0.568 3.225 sum -3.346 24.276 -4.544 24.923 Atomic orbital electron populations 1.21821 0.79386 1.03552 1.01729 1.47771 1.06916 1.05230 1.75844 1.21591 0.99647 0.85407 0.94768 1.23236 0.98210 0.77752 0.98601 0.88115 1.23486 0.98377 0.95483 1.00672 1.23210 0.98522 0.92741 0.87984 1.49540 1.46968 1.11020 1.28610 1.15870 0.81253 0.78745 0.82396 1.90850 1.38169 1.80264 1.29484 1.26168 1.00011 0.98160 0.95736 1.27761 0.96120 0.89177 1.01732 1.75094 1.12696 1.18304 1.01542 1.85105 1.48268 1.14882 1.40234 1.75435 1.07463 1.02449 1.18350 1.20391 0.87991 0.84493 0.74928 1.90685 1.13619 1.86698 1.47496 1.23564 1.04599 0.97165 1.04779 1.85379 1.07993 0.93316 1.96712 1.22854 0.94301 0.92195 1.58994 0.90943 1.24992 0.95676 0.98390 0.94530 1.70016 1.11727 1.21682 1.46816 0.86172 0.80277 0.80730 0.78351 1.20267 1.20754 1.19695 0.92749 0.90207 0.91363 0.88853 0.89407 0.88393 0.87434 0.89067 0.89297 0.75549 0.89225 0.89207 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.77 10.36 59.85 0.62 1.39 16 2 N -0.62 -8.22 2.87 -181.57 -0.52 -8.74 16 3 C 0.11 1.35 5.32 -4.05 -0.02 1.32 16 4 C 0.13 1.27 4.27 -72.52 -0.31 0.97 16 5 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 6 C -0.14 -1.40 8.00 -26.35 -0.21 -1.61 16 7 C 0.10 0.78 7.98 -8.49 -0.07 0.71 16 8 N -0.63 -6.26 3.57 -178.53 -0.64 -6.90 16 9 C 0.63 6.89 7.97 -12.13 -0.10 6.79 16 10 O -0.51 -6.69 16.62 5.37 0.09 -6.60 16 11 C -0.04 -0.32 7.51 -80.07 -0.60 -0.93 16 12 C 0.04 0.27 12.63 -14.29 -0.18 0.09 16 13 N -0.35 -2.86 12.22 30.71 0.38 -2.49 16 14 O 0.34 2.84 11.65 27.26 0.32 3.16 16 15 N -0.32 -2.83 11.02 33.49 0.37 -2.46 16 16 C 0.53 9.43 7.69 -10.98 -0.08 9.35 16 17 O -0.51 -10.69 15.36 5.56 0.09 -10.60 16 18 C -0.15 -2.90 4.65 36.01 0.17 -2.74 16 19 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 20 C -0.54 -14.88 9.50 30.94 0.29 -14.59 16 21 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 22 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 23 N -0.87 -25.71 13.22 55.49 0.73 -24.97 16 24 Si 0.92 21.04 29.55 -169.99 -5.02 16.01 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.80 6.28 -51.93 -0.33 0.48 16 30 H 0.07 0.57 8.00 -51.93 -0.42 0.15 16 31 H 0.09 1.33 6.99 -51.92 -0.36 0.97 16 32 H 0.09 1.06 6.97 -51.93 -0.36 0.70 16 33 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.11 1.27 7.93 -51.93 -0.41 0.86 16 35 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.09 0.69 7.44 -51.93 -0.39 0.31 16 37 H 0.23 0.93 8.06 -52.49 -0.42 0.51 16 38 H 0.09 1.62 7.42 -51.91 -0.38 1.24 16 39 H 0.09 1.59 8.11 -51.92 -0.42 1.17 16 40 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 365.22 15.07 5.50 5.50 Total: -1.00 -34.25 365.22 -6.24 -40.49 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -4.73 Total: -1.33 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -0.59 Total: 2.73 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: 0.32 Total: -45.56 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: 0.49 Total: -14.04 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.25 -6.24 -40.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001719375880.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.841 kcal (2) G-P(sol) polarization free energy of solvation -34.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds