Wall clock time and date at job start Sat Apr 11 2020 05:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46497 * 119.99794 * 2 1 4 4 C 1.52996 * 109.47562 * 275.36186 * 3 2 1 5 5 H 1.09000 * 112.77446 * 43.98854 * 4 3 2 6 6 C 1.53231 * 113.38887 * 273.27892 * 4 3 2 7 7 C 1.53503 * 83.43351 * 219.29139 * 6 4 3 8 8 N 1.47069 * 113.46809 * 174.76129 * 4 3 2 9 9 C 1.34776 * 136.05988 * 321.94795 * 8 4 3 10 10 O 1.21499 * 119.99925 * 354.64293 * 9 8 4 11 11 C 1.48277 * 119.99880 * 174.64482 * 9 8 4 12 12 C 1.47492 * 128.71079 * 179.70078 * 11 9 8 13 13 N 1.30646 * 102.71844 * 179.85118 * 12 11 9 14 14 O 1.20838 * 109.61417 * 0.42288 * 13 12 11 15 15 N 1.20905 * 115.91335 * 359.70047 * 14 13 12 16 16 C 1.34775 * 120.00210 * 180.02562 * 2 1 3 17 17 O 1.21278 * 120.00287 * 179.97438 * 16 2 1 18 18 C 1.50707 * 119.99907 * 359.97438 * 16 2 1 19 19 S 1.80994 * 109.47115 * 180.02562 * 18 16 2 20 20 C 1.76203 * 99.99953 * 180.02562 * 19 18 16 21 21 H 1.07998 * 119.99861 * 359.97438 * 20 19 18 22 22 C 1.38803 * 119.99853 * 180.02562 * 20 19 18 23 23 N 1.31632 * 119.99995 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99821 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47384 * 89.99521 * 24 22 20 26 26 H 1.48503 * 109.47064 * 209.99734 * 24 22 20 27 27 H 1.48503 * 109.47025 * 329.99530 * 24 22 20 28 28 H 1.08996 * 109.47673 * 85.60107 * 1 2 3 29 29 H 1.09002 * 109.46969 * 205.60117 * 1 2 3 30 30 H 1.08999 * 109.47133 * 325.59525 * 1 2 3 31 31 H 1.09008 * 109.46897 * 155.36176 * 3 2 1 32 32 H 1.09004 * 109.47004 * 35.37004 * 3 2 1 33 33 H 1.08997 * 114.33242 * 105.65635 * 6 4 3 34 34 H 1.09001 * 114.19651 * 332.91683 * 6 4 3 35 35 H 1.08997 * 113.46540 * 271.11637 * 7 6 4 36 36 H 1.08994 * 113.51795 * 140.68267 * 7 6 4 37 37 H 1.07999 * 128.63795 * 359.97438 * 12 11 9 38 38 H 1.09001 * 109.46757 * 300.00225 * 18 16 2 39 39 H 1.08997 * 109.46729 * 59.99921 * 18 16 2 40 40 H 0.97001 * 119.99434 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3357 1.7779 -1.4361 5 1 1.4116 1.6866 -2.0070 6 6 3.5613 1.2169 -2.1650 7 6 3.6569 2.6407 -2.7308 8 7 2.9519 3.1101 -1.5284 9 6 2.8987 4.2552 -0.8196 10 8 2.1243 4.3582 0.1109 11 6 3.7853 5.3892 -1.1755 12 6 3.8829 6.7176 -0.5422 13 7 4.8132 7.3046 -1.2471 14 8 5.2019 6.5542 -2.1108 15 7 4.6784 5.4647 -2.1391 16 6 2.1389 -1.1672 -0.0005 17 8 3.3517 -1.1672 -0.0010 18 6 1.3854 -2.4723 -0.0005 19 16 2.5616 -3.8480 -0.0005 20 6 1.4415 -5.2082 -0.0013 21 1 0.3762 -5.0305 -0.0012 22 6 1.9283 -6.5081 -0.0010 23 7 3.2267 -6.7246 -0.0006 24 14 0.7408 -7.9500 -0.0011 25 1 0.4264 -8.3323 -1.4011 26 1 1.3620 -9.1029 0.6993 27 1 -0.5100 -7.5613 0.6987 28 1 -0.3634 0.0788 -1.0246 29 1 -0.3633 -0.9268 0.4441 30 1 -0.3633 0.8479 0.5807 31 1 3.1881 1.1163 0.4285 32 1 1.6533 2.0024 0.5949 33 1 3.3312 0.4547 -2.9094 34 1 4.3852 0.9413 -1.5067 35 1 3.0884 2.7815 -3.6501 36 1 4.6793 3.0107 -2.8067 37 1 3.3256 7.1073 0.2968 38 1 0.7590 -2.5302 0.8897 39 1 0.7584 -2.5298 -0.8903 40 1 3.5668 -7.6331 -0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001719375880.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:48 Heat of formation + Delta-G solvation = 77.964697 kcal Electronic energy + Delta-G solvation = -26398.163352 eV Core-core repulsion = 22346.128235 eV Total energy + Delta-G solvation = -4052.035117 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.01720 -41.92724 -40.61149 -39.14150 -36.57127 -35.86515 -35.57201 -34.56528 -32.14034 -31.09034 -29.32375 -27.67888 -27.49653 -26.89555 -25.17953 -24.42719 -23.21564 -20.74863 -20.56121 -20.13669 -19.54872 -19.32338 -18.63454 -18.06772 -17.58037 -17.28376 -16.90028 -16.85332 -16.23273 -15.91611 -15.73327 -15.42765 -14.90403 -14.55086 -14.27802 -14.23348 -14.06683 -13.92967 -13.65568 -13.48998 -13.22487 -13.12323 -13.04991 -12.90670 -12.85597 -12.61708 -12.56084 -12.46627 -11.91529 -11.76819 -11.71228 -11.45659 -11.12531 -10.87911 -10.23714 -10.14304 -9.67465 -8.64000 -8.33104 -6.10290 -0.42350 0.26461 1.07369 1.30077 1.43391 1.48499 1.58077 1.58496 1.68902 2.08378 2.24650 2.29586 2.41377 2.72381 3.01202 3.23501 3.28403 3.46089 3.63783 3.69114 3.76851 3.86417 4.00341 4.21244 4.25806 4.30935 4.37099 4.41394 4.49839 4.52204 4.55761 4.70172 4.81556 4.91452 4.94063 5.16644 5.43899 5.46741 6.21185 6.24135 6.29157 6.59286 7.08630 7.14046 7.29922 8.75836 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.032507 B = 0.002033 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.154026 B =13768.403240 C =14203.880666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.607 5.607 3 C 0.115 3.885 4 C 0.127 3.873 5 H 0.123 0.877 6 C -0.144 4.144 7 C 0.109 3.891 8 N -0.628 5.628 9 C 0.630 3.370 10 O -0.540 6.540 11 C -0.051 4.051 12 C 0.054 3.946 13 N -0.362 5.362 14 O 0.343 5.657 15 N -0.319 5.319 16 C 0.534 3.466 17 O -0.553 6.553 18 C -0.124 4.124 19 S -0.148 6.148 20 C -0.544 4.544 21 H 0.083 0.917 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 0.996 3.004 25 H -0.267 1.267 26 H -0.280 1.280 27 H -0.258 1.258 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.081 0.919 35 H 0.118 0.882 36 H 0.090 0.910 37 H 0.256 0.744 38 H 0.105 0.895 39 H 0.111 0.889 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.169 25.992 -5.659 27.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.341 5.341 3 C -0.009 4.009 4 C 0.024 3.976 5 H 0.141 0.859 6 C -0.182 4.182 7 C -0.012 4.012 8 N -0.363 5.363 9 C 0.417 3.583 10 O -0.416 6.416 11 C -0.216 4.216 12 C -0.132 4.132 13 N -0.086 5.086 14 O 0.116 5.884 15 N -0.037 5.037 16 C 0.322 3.678 17 O -0.431 6.431 18 C -0.275 4.275 19 S 0.079 5.921 20 C -0.692 4.692 21 H 0.101 0.899 22 C -0.192 4.192 23 N -0.547 5.547 24 Si 0.818 3.182 25 H -0.193 1.193 26 H -0.205 1.205 27 H -0.182 1.182 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.085 0.915 32 H 0.112 0.888 33 H 0.121 0.879 34 H 0.099 0.901 35 H 0.136 0.864 36 H 0.109 0.891 37 H 0.272 0.728 38 H 0.123 0.877 39 H 0.129 0.871 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.850 26.385 -5.835 27.172 hybrid contribution -2.258 -1.174 0.802 2.668 sum -5.108 25.210 -5.033 26.210 Atomic orbital electron populations 1.22138 0.76720 1.04596 1.03794 1.47693 1.08434 1.04105 1.73912 1.21561 0.98224 0.84734 0.96368 1.23260 0.99182 0.77930 0.97201 0.85917 1.23370 0.97536 0.96797 1.00518 1.23282 0.99018 0.90837 0.88102 1.49619 1.46920 1.10691 1.29088 1.16032 0.81153 0.79125 0.82028 1.90826 1.39346 1.80912 1.30520 1.26064 1.00381 0.98542 0.96597 1.28225 0.95323 0.88035 1.01624 1.75114 1.13251 1.18408 1.01862 1.85105 1.48199 1.14684 1.40369 1.75411 1.07293 1.02725 1.18316 1.20123 0.87369 0.85172 0.75145 1.90680 1.15297 1.87259 1.49827 1.23385 1.02772 0.94912 1.06458 1.85551 1.12434 0.97121 1.97013 1.23196 0.94684 0.92682 1.58659 0.89913 1.26103 0.97530 1.01672 0.93857 1.70182 1.14044 1.22408 1.48100 0.84982 0.77954 0.76435 0.78798 1.19254 1.20516 1.18224 0.90301 0.90153 0.89244 0.91516 0.88840 0.87949 0.90061 0.86412 0.89136 0.72805 0.87688 0.87101 0.92063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.15 10.36 127.77 1.32 2.47 16 2 N -0.61 -15.17 2.87 -846.77 -2.43 -17.61 16 3 C 0.12 2.73 5.32 86.38 0.46 3.19 16 4 C 0.13 2.41 4.27 41.71 0.18 2.59 16 5 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 6 C -0.14 -2.78 8.00 30.84 0.25 -2.54 16 7 C 0.11 1.58 7.98 83.19 0.66 2.25 16 8 N -0.63 -11.78 3.57 -837.06 -2.99 -14.77 16 9 C 0.63 13.06 7.97 86.91 0.69 13.75 16 10 O -0.54 -13.48 16.62 -3.71 -0.06 -13.55 16 11 C -0.05 -0.88 7.51 44.29 0.33 -0.54 16 12 C 0.05 0.68 12.63 87.31 1.10 1.79 16 13 N -0.36 -5.34 12.22 -61.45 -0.75 -6.10 16 14 O 0.34 5.32 11.65 140.85 1.64 6.96 16 15 N -0.32 -5.33 11.02 -52.07 -0.57 -5.90 16 16 C 0.53 18.74 7.69 87.66 0.67 19.41 16 17 O -0.55 -23.91 15.36 -3.02 -0.05 -23.96 16 18 C -0.12 -4.70 4.65 71.24 0.33 -4.37 16 19 S -0.15 -7.99 20.57 -56.49 -1.16 -9.15 16 20 C -0.54 -30.32 9.50 67.96 0.65 -29.68 16 21 H 0.08 4.26 7.80 -2.91 -0.02 4.24 16 22 C 0.01 0.74 5.49 84.86 0.47 1.20 16 23 N -0.91 -55.13 13.22 21.65 0.29 -54.85 16 24 Si 1.00 42.80 29.55 68.60 2.03 44.83 16 25 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 26 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 27 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 28 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.08 1.36 6.28 -2.39 -0.01 1.35 16 30 H 0.09 1.17 8.00 -2.39 -0.02 1.15 16 31 H 0.07 1.97 6.99 -2.38 -0.02 1.95 16 32 H 0.09 2.15 6.97 -2.39 -0.02 2.13 16 33 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.08 2.03 7.93 -2.39 -0.02 2.01 16 35 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.09 1.32 7.44 -2.39 -0.02 1.30 16 37 H 0.26 1.48 8.06 -2.91 -0.02 1.46 16 38 H 0.10 3.65 7.42 -2.40 -0.02 3.63 16 39 H 0.11 3.72 8.11 -2.40 -0.02 3.70 16 40 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -76.62 365.22 4.14 -72.48 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 1.08 Total: 12.08 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: 7.12 Total: 9.53 kcal Atomic # 7 Polarization: -92.76 SS G_CDS: -6.46 Total: -99.22 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: 1.53 Total: -30.55 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 16 Polarization: -7.99 SS G_CDS: -1.16 Total: -9.15 kcal Total: -76.62 4.14 -72.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001719375880.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.445 kcal (2) G-P(sol) polarization free energy of solvation -76.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds