Wall clock time and date at job start Sat Apr 11 2020 05:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21279 * 119.99812 * 2 1 4 4 N 1.34780 * 120.00075 * 180.02562 * 2 1 3 5 5 C 1.38902 * 119.99464 * 180.02562 * 4 2 1 6 6 N 1.29514 * 125.26514 * 179.97438 * 5 4 2 7 7 C 1.33631 * 115.66919 * 179.97438 * 6 5 4 8 8 C 1.47198 * 122.50304 * 180.02562 * 7 6 5 9 9 O 1.21647 * 120.00147 * 180.02562 * 8 7 6 10 10 N 1.34780 * 119.99992 * 0.02678 * 8 7 6 11 11 C 1.46504 * 119.99814 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.46941 * 180.02562 * 11 10 8 13 13 O 1.42905 * 113.28091 * 313.06421 * 12 11 10 14 14 C 1.53495 * 114.20669 * 180.02562 * 12 11 10 15 15 N 1.47066 * 87.98658 * 220.34216 * 14 12 11 16 16 C 1.36937 * 136.06113 * 206.85859 * 15 14 12 17 17 H 1.07995 * 120.00001 * 0.02562 * 16 15 14 18 18 C 1.38817 * 120.00320 * 179.97438 * 16 15 14 19 19 N 1.31620 * 119.99557 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99975 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46896 * 90.00557 * 20 18 16 22 22 H 1.48506 * 109.46723 * 210.00327 * 20 18 16 23 23 H 1.48496 * 109.47378 * 330.00014 * 20 18 16 24 24 C 1.47067 * 87.88528 * 27.11900 * 15 14 12 25 25 C 1.34891 * 114.99505 * 0.26815 * 7 6 5 26 26 S 1.70984 * 109.19667 * 359.59738 * 25 7 6 27 27 H 1.09008 * 109.46652 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47286 * 299.99559 * 1 2 3 29 29 H 1.08998 * 109.46780 * 60.00263 * 1 2 3 30 30 H 0.96995 * 120.00134 * 359.97438 * 4 2 1 31 31 H 0.96992 * 119.99879 * 359.97438 * 10 8 7 32 32 H 1.09003 * 109.47373 * 59.99924 * 11 10 8 33 33 H 1.08997 * 109.47135 * 299.99923 * 11 10 8 34 34 H 0.96696 * 113.99817 * 46.93921 * 13 12 11 35 35 H 1.09005 * 113.46950 * 105.56781 * 14 12 11 36 36 H 1.08998 * 113.47096 * 335.12425 * 14 12 11 37 37 H 0.96999 * 119.99537 * 179.97438 * 19 18 16 38 38 H 1.09007 * 113.46858 * 87.65629 * 24 15 14 39 39 H 1.08993 * 113.47208 * 218.09965 * 24 15 14 40 40 H 1.08004 * 125.39831 * 179.69376 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5700 -1.1671 0.0000 6 7 4.3178 -2.2245 0.0001 7 6 5.6354 -2.0016 0.0001 8 6 6.6224 -3.0936 -0.0004 9 8 7.8118 -2.8386 0.0001 10 7 6.2082 -4.3762 -0.0014 11 6 7.1906 -5.4631 -0.0014 12 6 6.4623 -6.8087 -0.0033 13 8 5.4042 -6.8796 0.9545 14 6 7.3940 -8.0286 -0.0028 15 7 6.4737 -8.6668 -0.9560 16 6 6.1315 -9.9506 -1.2874 17 1 6.5972 -10.7819 -0.7790 18 6 5.1853 -10.1837 -2.2760 19 7 4.6174 -9.1705 -2.8952 20 14 4.7181 -11.9350 -2.7274 21 1 3.5803 -12.3773 -1.8818 22 1 4.3220 -11.9886 -4.1577 23 1 5.8803 -12.8313 -2.5018 24 6 6.0874 -7.3195 -1.4014 25 6 5.9935 -0.7010 0.0058 26 16 4.5859 0.2697 -0.0001 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6960 -2.0072 -0.0005 31 1 5.2599 -4.5796 -0.0015 32 1 7.8148 -5.3887 0.8891 33 1 7.8160 -5.3877 -0.8908 34 1 4.8191 -6.1097 0.9520 35 1 7.4428 -8.5371 0.9601 36 1 8.3789 -7.8228 -0.4218 37 1 3.9565 -9.3334 -3.5863 38 1 6.7244 -6.9247 -2.1930 39 1 5.0254 -7.2249 -1.6277 40 1 7.0083 -0.3316 0.0114 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724459647.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:59 Heat of formation + Delta-G solvation = 0.569544 kcal Electronic energy + Delta-G solvation = -26440.086766 eV Core-core repulsion = 22384.695543 eV Total energy + Delta-G solvation = -4055.391223 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.94701 -40.30093 -39.19198 -38.23713 -35.39255 -34.99894 -33.93248 -32.02117 -31.30964 -29.61026 -28.79921 -26.61200 -25.02643 -24.70499 -22.91494 -21.95445 -21.63518 -20.13041 -19.35695 -18.95881 -17.64872 -17.26038 -17.18932 -16.60650 -16.44423 -15.65896 -15.60184 -15.41567 -14.90478 -14.69218 -14.40029 -14.03310 -13.92041 -13.58508 -13.37609 -13.28177 -13.15426 -12.85070 -12.72856 -12.26923 -12.21037 -11.84016 -11.43959 -11.06810 -10.89961 -10.69699 -10.68750 -10.45479 -10.30651 -10.15824 -9.81522 -9.69729 -9.49081 -9.14976 -8.88639 -8.82179 -8.59541 -6.89035 -5.76284 -3.08122 0.29304 0.68072 1.44864 1.45936 2.10386 2.14989 3.24497 3.33588 3.40410 3.44557 3.46581 3.96668 4.17173 4.44448 4.53980 4.54601 4.76562 4.92471 5.00699 5.10556 5.19528 5.25943 5.30779 5.34012 5.61289 5.68916 5.78206 6.03665 6.28867 6.32993 6.41629 6.54802 6.56419 7.01299 7.14793 7.17827 7.20221 7.50969 7.55223 7.96123 8.11836 8.23113 9.03484 9.70316 10.61616 11.41438 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.014127 B = 0.002537 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.524150 B =11035.798779 C =12553.297166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.513 3.487 3 O -0.513 6.513 4 N -0.620 5.620 5 C 0.249 3.751 6 N -0.475 5.475 7 C 0.031 3.969 8 C 0.593 3.407 9 O -0.536 6.536 10 N -0.705 5.705 11 C 0.106 3.894 12 C 0.058 3.942 13 O -0.522 6.522 14 C 0.134 3.866 15 N -0.600 5.600 16 C -0.213 4.213 17 H 0.082 0.918 18 C -0.009 4.009 19 N -0.921 5.921 20 Si 0.915 3.085 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.137 3.863 25 C -0.261 4.261 26 S 0.273 5.727 27 H 0.086 0.914 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.428 0.572 31 H 0.406 0.594 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.361 0.639 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.253 0.747 38 H 0.033 0.967 39 H 0.076 0.924 40 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.717 22.503 6.911 24.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.300 3.700 3 O -0.387 6.387 4 N -0.272 5.272 5 C -0.120 4.120 6 N -0.198 5.198 7 C -0.103 4.103 8 C 0.377 3.623 9 O -0.413 6.413 10 N -0.357 5.357 11 C -0.019 4.019 12 C 0.015 3.985 13 O -0.326 6.326 14 C 0.007 3.993 15 N -0.325 5.325 16 C -0.340 4.340 17 H 0.100 0.900 18 C -0.205 4.205 19 N -0.568 5.568 20 Si 0.745 3.255 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.206 1.206 24 C 0.010 3.990 25 C -0.404 4.404 26 S 0.524 5.476 27 H 0.105 0.895 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.268 0.732 31 H 0.243 0.757 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.208 0.792 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.051 0.949 39 H 0.095 0.905 40 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -6.855 23.075 6.848 25.027 hybrid contribution -0.560 -1.767 -0.578 1.942 sum -7.415 21.308 6.271 23.417 Atomic orbital electron populations 1.21831 0.88440 1.05564 1.06428 1.21379 0.91751 0.82062 0.74771 1.90689 1.69535 1.30676 1.47814 1.43000 1.01525 1.11703 1.70925 1.24305 0.89884 0.93721 1.04118 1.67018 1.03224 1.29497 1.20050 1.19839 0.88597 0.93638 1.08252 1.17066 0.86742 0.81853 0.76687 1.90817 1.15918 1.83793 1.50811 1.45755 1.11247 1.05130 1.73589 1.22019 0.91664 0.85112 1.03074 1.23415 0.90079 0.91878 0.93171 1.86624 1.42185 1.45495 1.58248 1.22384 0.92701 0.89284 0.94887 1.45272 1.44363 1.01221 1.41646 1.18911 1.18313 0.80762 1.16005 0.89981 1.24789 0.99352 0.97661 0.98731 1.69823 1.30624 1.28753 1.27618 0.86073 0.78389 0.83594 0.77425 1.21504 1.21669 1.20645 1.22745 1.01286 0.84479 0.90450 1.26922 1.07832 0.97707 1.07943 1.84881 0.91038 1.05326 1.66316 0.89490 0.87536 0.87507 0.73175 0.75711 0.90787 0.89963 0.79237 0.93025 0.93244 0.93733 0.94897 0.90530 0.79248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.31 10.39 36.01 0.37 0.06 16 2 C 0.51 3.23 7.90 -10.98 -0.09 3.14 16 3 O -0.51 -4.96 14.61 5.56 0.08 -4.88 16 4 N -0.62 -4.22 5.40 -11.91 -0.06 -4.28 16 5 C 0.25 2.54 8.36 -87.54 -0.73 1.81 16 6 N -0.47 -5.72 10.11 -10.51 -0.11 -5.82 16 7 C 0.03 0.42 6.66 -84.63 -0.56 -0.15 16 8 C 0.59 9.13 7.79 -12.62 -0.10 9.03 16 9 O -0.54 -9.56 16.65 5.24 0.09 -9.47 16 10 N -0.71 -10.35 5.34 -61.45 -0.33 -10.68 16 11 C 0.11 1.69 5.42 -4.04 -0.02 1.67 16 12 C 0.06 1.09 1.73 -90.11 -0.16 0.94 16 13 O -0.52 -9.95 13.56 -35.23 -0.48 -10.42 16 14 C 0.13 2.84 8.11 -8.51 -0.07 2.77 16 15 N -0.60 -15.81 3.78 -184.75 -0.70 -16.51 16 16 C -0.21 -6.11 10.75 -15.06 -0.16 -6.27 16 17 H 0.08 2.27 7.83 -52.49 -0.41 1.86 16 18 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 19 N -0.92 -27.52 11.51 55.49 0.64 -26.88 16 20 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 C 0.14 3.21 6.83 -8.51 -0.06 3.16 16 25 C -0.26 -2.95 10.55 29.54 0.31 -2.64 16 26 S 0.27 2.66 20.29 -107.50 -2.18 0.48 16 27 H 0.09 0.00 7.92 -51.92 -0.41 -0.41 16 28 H 0.11 0.12 8.14 -51.93 -0.42 -0.30 16 29 H 0.11 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.43 1.84 8.66 -40.82 -0.35 1.48 16 31 H 0.41 5.52 6.42 -40.82 -0.26 5.26 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.08 1.35 7.89 -51.93 -0.41 0.94 16 34 H 0.36 5.37 7.20 45.56 0.33 5.69 16 35 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.05 0.96 8.10 -51.93 -0.42 0.54 16 37 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.03 0.78 7.93 -51.93 -0.41 0.37 16 39 H 0.08 2.00 7.12 -51.93 -0.37 1.63 16 40 H 0.19 1.93 7.99 -52.48 -0.42 1.51 16 LS Contribution 360.04 15.07 5.43 5.43 Total: -1.00 -37.53 360.04 -7.97 -45.50 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -3.97 Total: 7.00 kcal Atomic # 6 Polarization: 14.52 SS G_CDS: -1.36 Total: 13.16 kcal Atomic # 7 Polarization: -63.62 SS G_CDS: -0.56 Total: -64.18 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.31 Total: -24.77 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Atomic # 16 Polarization: 2.66 SS G_CDS: -2.18 Total: 0.48 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -37.53 -7.97 -45.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724459647.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.071 kcal (2) G-P(sol) polarization free energy of solvation -37.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds