Wall clock time and date at job start Sat Apr 11 2020 05:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35653 * 117.00077 * 2 1 4 4 C 1.38645 * 120.14374 * 359.97438 * 3 2 1 5 5 C 1.38202 * 120.07386 * 179.74947 * 4 3 2 6 6 Cl 1.73599 * 119.82133 * 179.97438 * 5 4 3 7 7 C 1.38708 * 120.35863 * 359.97438 * 5 4 3 8 8 C 1.37722 * 120.28643 * 359.97438 * 7 5 4 9 9 C 1.39744 * 119.92337 * 0.02737 * 8 7 5 10 10 C 1.47485 * 120.17632 * 179.97438 * 9 8 7 11 11 O 1.21593 * 119.99595 * 180.02562 * 10 9 8 12 12 N 1.34767 * 119.99942 * 0.02562 * 10 9 8 13 13 C 1.46505 * 119.99736 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.46880 * 180.02562 * 13 12 10 15 15 O 1.42893 * 112.94464 * 53.41017 * 14 13 12 16 16 C 1.53945 * 113.74013 * 281.67132 * 14 13 12 17 17 N 1.47584 * 86.11809 * 222.05116 * 16 14 13 18 18 C 1.36931 * 134.49088 * 204.64018 * 17 16 14 19 19 H 1.07999 * 119.99698 * 179.97438 * 18 17 16 20 20 C 1.38809 * 120.00275 * 0.02562 * 18 17 16 21 21 N 1.31623 * 120.00101 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00101 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47220 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47544 * 119.99695 * 22 20 18 25 25 H 1.48503 * 109.47078 * 239.99454 * 22 20 18 26 26 C 1.47582 * 91.01390 * 24.64388 * 17 16 14 27 27 H 1.08999 * 109.47041 * 60.00349 * 1 2 3 28 28 H 1.08997 * 109.47455 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47033 * 300.00531 * 1 2 3 30 30 H 1.08000 * 119.96456 * 359.72947 * 4 3 2 31 31 H 1.07997 * 119.85326 * 180.02562 * 7 5 4 32 32 H 1.08003 * 120.03642 * 180.02562 * 8 7 5 33 33 H 0.97003 * 120.00700 * 0.02562 * 12 10 9 34 34 H 1.09003 * 109.47377 * 299.99953 * 13 12 10 35 35 H 1.08999 * 109.46968 * 60.00415 * 13 12 10 36 36 H 0.96697 * 114.00021 * 309.66263 * 15 14 13 37 37 H 1.08993 * 113.77181 * 336.35430 * 16 14 13 38 38 H 1.09001 * 113.76421 * 107.75217 * 16 14 13 39 39 H 0.97000 * 119.99884 * 180.02562 * 21 20 18 40 40 H 1.08998 * 113.76784 * 221.06249 * 26 17 16 41 41 H 1.09001 * 113.76882 * 89.65654 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2927 2.3733 -0.0005 5 6 1.9216 3.6039 0.0047 6 17 0.9734 5.0581 0.0033 7 6 3.3064 3.6835 0.0110 8 6 4.0680 2.5360 0.0127 9 6 3.4445 1.2855 0.0074 10 6 4.2547 0.0531 0.0086 11 8 3.7087 -1.0334 0.0036 12 7 5.6000 0.1312 0.0154 13 6 6.4048 -1.0931 0.0171 14 6 7.8903 -0.7268 0.0257 15 8 8.2379 0.1660 1.0859 16 6 8.4311 -0.2988 -1.3507 17 7 9.6191 -1.1117 -1.0249 18 6 10.9285 -1.1007 -1.4251 19 1 11.6217 -1.8256 -1.0247 20 6 11.3653 -0.1571 -2.3447 21 7 10.5207 0.7268 -2.8324 22 14 13.1519 -0.1416 -2.8901 23 1 13.8898 -1.2294 -2.1992 24 1 13.2230 -0.3498 -4.3588 25 1 13.7633 1.1672 -2.5456 26 6 8.8288 -1.9413 -0.0947 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 0.2141 2.3189 -0.0054 31 1 3.7894 4.6494 0.0155 32 1 5.1460 2.6027 0.0181 33 1 6.0357 0.9979 0.0198 34 1 6.1707 -1.6806 0.9049 35 1 6.1794 -1.6773 -0.8751 36 1 7.6685 0.9452 1.1464 37 1 7.8517 -0.6842 -2.1895 38 1 8.6373 0.7686 -1.4291 39 1 10.8259 1.3860 -3.4752 40 1 9.3524 -2.1851 0.8297 41 1 8.3661 -2.8091 -0.5647 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724472813.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:02 Heat of formation + Delta-G solvation = -32.327193 kcal Electronic energy + Delta-G solvation = -26824.978488 eV Core-core repulsion = 22733.824298 eV Total energy + Delta-G solvation = -4091.154190 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.90606 -39.48878 -38.41831 -37.96831 -36.65568 -34.89725 -34.00296 -32.05487 -31.56347 -30.64469 -28.58908 -27.59780 -26.06231 -25.00645 -23.94452 -22.66410 -21.86012 -20.62500 -19.40631 -18.96777 -17.77360 -16.95892 -16.73049 -16.17445 -16.05975 -15.61570 -15.46838 -15.23341 -14.98542 -14.64534 -14.20692 -13.96737 -13.86906 -13.72007 -13.37534 -13.06711 -12.87940 -12.67427 -12.31269 -12.24786 -12.17480 -11.75732 -11.74376 -11.40066 -11.19618 -11.07035 -10.94132 -10.75556 -10.40611 -10.00984 -9.72443 -9.50971 -9.37897 -9.21941 -8.93464 -8.82868 -8.61860 -6.90067 -5.77737 -3.09242 0.33662 0.90229 1.60673 2.63896 2.87714 3.11985 3.39421 3.44789 3.47221 3.51844 4.23878 4.43221 4.45344 4.51908 4.58713 4.62765 4.80481 4.82380 4.98989 5.05526 5.09092 5.21304 5.22508 5.29478 5.51780 5.59747 5.69722 5.76351 5.77004 6.06034 6.08553 6.30003 6.41968 6.53736 6.56881 6.93824 7.01125 7.15951 7.49365 7.50099 7.95701 8.11140 8.26945 9.03468 9.69721 10.55757 11.39684 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.016142 B = 0.002475 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.146182 B =11312.295276 C =12494.663606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.273 6.273 3 C 0.197 3.803 4 C -0.215 4.215 5 C 0.028 3.972 6 Cl -0.062 7.062 7 C -0.156 4.156 8 C -0.033 4.033 9 C -0.165 4.165 10 C 0.560 3.440 11 O -0.518 6.518 12 N -0.722 5.722 13 C 0.105 3.895 14 C 0.063 3.937 15 O -0.525 6.525 16 C 0.144 3.856 17 N -0.603 5.603 18 C -0.217 4.217 19 H 0.082 0.918 20 C -0.009 4.009 21 N -0.923 5.923 22 Si 0.913 3.087 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.290 1.290 26 C 0.136 3.864 27 H 0.058 0.942 28 H 0.105 0.895 29 H 0.057 0.943 30 H 0.145 0.855 31 H 0.143 0.857 32 H 0.146 0.854 33 H 0.396 0.604 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.361 0.639 37 H 0.035 0.965 38 H 0.078 0.922 39 H 0.252 0.748 40 H 0.055 0.945 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.625 6.560 7.078 24.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.183 6.183 3 C 0.148 3.852 4 C -0.235 4.235 5 C 0.001 3.999 6 Cl -0.032 7.032 7 C -0.175 4.175 8 C -0.051 4.051 9 C -0.169 4.169 10 C 0.346 3.654 11 O -0.395 6.395 12 N -0.375 5.375 13 C -0.020 4.020 14 C 0.020 3.980 15 O -0.329 6.329 16 C 0.018 3.982 17 N -0.328 5.328 18 C -0.345 4.345 19 H 0.099 0.901 20 C -0.205 4.205 21 N -0.570 5.570 22 Si 0.744 3.256 23 H -0.204 1.204 24 H -0.218 1.218 25 H -0.217 1.217 26 C 0.009 3.991 27 H 0.076 0.924 28 H 0.124 0.876 29 H 0.076 0.924 30 H 0.162 0.838 31 H 0.161 0.839 32 H 0.164 0.836 33 H 0.231 0.769 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.206 0.794 37 H 0.052 0.948 38 H 0.096 0.904 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -22.239 5.315 6.997 23.912 hybrid contribution 0.313 1.240 -0.621 1.422 sum -21.925 6.555 6.376 23.756 Atomic orbital electron populations 1.23230 0.78450 1.04684 1.01337 1.86430 1.20976 1.24642 1.86299 1.18834 0.90786 0.84576 0.90966 1.21054 1.00993 0.90313 1.11137 1.20851 0.92011 0.87323 0.99712 1.98394 1.72344 1.36004 1.96502 1.20912 0.91252 0.99918 1.05397 1.21202 1.00438 0.90023 0.93486 1.19523 0.90867 0.94469 1.12004 1.17816 0.81931 0.88416 0.77192 1.90829 1.71496 1.28536 1.48592 1.45829 1.05780 1.10259 1.75650 1.22059 0.90360 0.86582 1.02950 1.23768 0.89441 0.94123 0.90653 1.86625 1.58578 1.35791 1.51882 1.22902 0.86044 0.98950 0.90295 1.45669 1.04259 1.33918 1.48985 1.19044 0.82848 1.12808 1.19769 0.90067 1.24765 0.98115 0.98191 0.99447 1.69808 1.33237 1.20143 1.33832 0.86021 0.84112 0.77390 0.78087 1.20446 1.21784 1.21708 1.22556 0.90360 0.91766 0.94376 0.92383 0.87632 0.92424 0.83761 0.83881 0.83621 0.76875 0.90999 0.90148 0.79359 0.94776 0.90391 0.93764 0.92632 0.93177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 101.05 0.99 1.12 16 2 O -0.27 -3.32 8.57 -40.55 -0.35 -3.66 16 3 C 0.20 2.25 6.70 -38.71 -0.26 1.99 16 4 C -0.22 -1.94 8.80 -39.44 -0.35 -2.29 16 5 C 0.03 0.25 6.32 -39.42 -0.25 0.00 16 6 Cl -0.06 -0.49 28.94 -51.86 -1.50 -1.99 16 7 C -0.16 -1.30 9.80 -39.60 -0.39 -1.69 16 8 C -0.03 -0.30 9.53 -39.21 -0.37 -0.67 16 9 C -0.16 -1.95 5.89 -104.84 -0.62 -2.57 16 10 C 0.56 8.09 7.76 -12.50 -0.10 7.99 16 11 O -0.52 -9.28 15.16 -16.61 -0.25 -9.54 16 12 N -0.72 -9.46 5.29 -61.36 -0.32 -9.79 16 13 C 0.10 1.60 5.28 -4.04 -0.02 1.58 16 14 C 0.06 1.14 1.52 -89.69 -0.14 1.00 16 15 O -0.53 -9.35 13.51 -35.23 -0.48 -9.83 16 16 C 0.14 3.25 6.92 -2.97 -0.02 3.22 16 17 N -0.60 -15.45 3.70 -177.78 -0.66 -16.11 16 18 C -0.22 -6.14 10.70 -15.06 -0.16 -6.30 16 19 H 0.08 2.23 7.83 -52.49 -0.41 1.81 16 20 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 21 N -0.92 -27.04 11.38 55.49 0.63 -26.41 16 22 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 C 0.14 2.79 8.34 -2.97 -0.02 2.77 16 27 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 28 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.31 7.67 -51.93 -0.40 -0.08 16 30 H 0.14 0.99 6.30 -52.49 -0.33 0.66 16 31 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.15 1.00 6.40 -52.48 -0.34 0.66 16 33 H 0.40 4.25 5.33 -40.82 -0.22 4.03 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.08 1.29 8.05 -51.93 -0.42 0.88 16 36 H 0.36 4.69 7.61 45.56 0.35 5.04 16 37 H 0.03 0.79 8.03 -51.93 -0.42 0.37 16 38 H 0.08 1.93 7.15 -51.93 -0.37 1.56 16 39 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.05 0.95 8.10 -51.93 -0.42 0.53 16 LS Contribution 361.20 15.07 5.44 5.44 Total: -1.00 -35.70 361.20 -8.50 -44.20 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -4.20 Total: 4.68 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: -1.80 Total: 5.80 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: -0.35 Total: -52.30 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -1.07 Total: -23.03 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.50 Total: -1.99 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.70 -8.50 -44.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724472813.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.871 kcal (2) G-P(sol) polarization free energy of solvation -35.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds