Wall clock time and date at job start Sat Apr 11 2020 05:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35653 * 117.00077 * 2 1 4 4 C 1.38645 * 120.14374 * 359.97438 * 3 2 1 5 5 C 1.38202 * 120.07386 * 179.74947 * 4 3 2 6 6 Cl 1.73599 * 119.82133 * 179.97438 * 5 4 3 7 7 C 1.38708 * 120.35863 * 359.97438 * 5 4 3 8 8 C 1.37722 * 120.28643 * 359.97438 * 7 5 4 9 9 C 1.39744 * 119.92337 * 0.02737 * 8 7 5 10 10 C 1.47485 * 120.17632 * 179.97438 * 9 8 7 11 11 O 1.21593 * 119.99595 * 180.02562 * 10 9 8 12 12 N 1.34767 * 119.99942 * 0.02562 * 10 9 8 13 13 C 1.46505 * 119.99736 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.46880 * 180.02562 * 13 12 10 15 15 O 1.42893 * 112.94464 * 53.41017 * 14 13 12 16 16 C 1.53945 * 113.74013 * 281.67132 * 14 13 12 17 17 N 1.47584 * 86.11809 * 222.05116 * 16 14 13 18 18 C 1.36931 * 134.49088 * 204.64018 * 17 16 14 19 19 H 1.07999 * 119.99698 * 179.97438 * 18 17 16 20 20 C 1.38809 * 120.00275 * 0.02562 * 18 17 16 21 21 N 1.31623 * 120.00101 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00101 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47220 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47544 * 119.99695 * 22 20 18 25 25 H 1.48503 * 109.47078 * 239.99454 * 22 20 18 26 26 C 1.47582 * 91.01390 * 24.64388 * 17 16 14 27 27 H 1.08999 * 109.47041 * 60.00349 * 1 2 3 28 28 H 1.08997 * 109.47455 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47033 * 300.00531 * 1 2 3 30 30 H 1.08000 * 119.96456 * 359.72947 * 4 3 2 31 31 H 1.07997 * 119.85326 * 180.02562 * 7 5 4 32 32 H 1.08003 * 120.03642 * 180.02562 * 8 7 5 33 33 H 0.97003 * 120.00700 * 0.02562 * 12 10 9 34 34 H 1.09003 * 109.47377 * 299.99953 * 13 12 10 35 35 H 1.08999 * 109.46968 * 60.00415 * 13 12 10 36 36 H 0.96697 * 114.00021 * 309.66263 * 15 14 13 37 37 H 1.08993 * 113.77181 * 336.35430 * 16 14 13 38 38 H 1.09001 * 113.76421 * 107.75217 * 16 14 13 39 39 H 0.97000 * 119.99884 * 180.02562 * 21 20 18 40 40 H 1.08998 * 113.76784 * 221.06249 * 26 17 16 41 41 H 1.09001 * 113.76882 * 89.65654 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2927 2.3733 -0.0005 5 6 1.9216 3.6039 0.0047 6 17 0.9734 5.0581 0.0033 7 6 3.3064 3.6835 0.0110 8 6 4.0680 2.5360 0.0127 9 6 3.4445 1.2855 0.0074 10 6 4.2547 0.0531 0.0086 11 8 3.7087 -1.0334 0.0036 12 7 5.6000 0.1312 0.0154 13 6 6.4048 -1.0931 0.0171 14 6 7.8903 -0.7268 0.0257 15 8 8.2379 0.1660 1.0859 16 6 8.4311 -0.2988 -1.3507 17 7 9.6191 -1.1117 -1.0249 18 6 10.9285 -1.1007 -1.4251 19 1 11.6217 -1.8256 -1.0247 20 6 11.3653 -0.1571 -2.3447 21 7 10.5207 0.7268 -2.8324 22 14 13.1519 -0.1416 -2.8901 23 1 13.8898 -1.2294 -2.1992 24 1 13.2230 -0.3498 -4.3588 25 1 13.7633 1.1672 -2.5456 26 6 8.8288 -1.9413 -0.0947 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 0.2141 2.3189 -0.0054 31 1 3.7894 4.6494 0.0155 32 1 5.1460 2.6027 0.0181 33 1 6.0357 0.9979 0.0198 34 1 6.1707 -1.6806 0.9049 35 1 6.1794 -1.6773 -0.8751 36 1 7.6685 0.9452 1.1464 37 1 7.8517 -0.6842 -2.1895 38 1 8.6373 0.7686 -1.4291 39 1 10.8259 1.3860 -3.4752 40 1 9.3524 -2.1851 0.8297 41 1 8.3661 -2.8091 -0.5647 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724472813.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:01 Heat of formation + Delta-G solvation = -58.185187 kcal Electronic energy + Delta-G solvation = -26826.099774 eV Core-core repulsion = 22733.824298 eV Total energy + Delta-G solvation = -4092.275477 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.76983 -40.79315 -39.70403 -38.69968 -37.34836 -36.48082 -35.26910 -34.00741 -32.45553 -31.34768 -30.15140 -28.36524 -27.59972 -26.72569 -24.96063 -23.73138 -23.17841 -21.68045 -20.97684 -19.88714 -18.88620 -18.50433 -17.81643 -17.31688 -16.95620 -16.90063 -16.56832 -16.25397 -16.16555 -15.88802 -15.71023 -15.33293 -14.87673 -14.76693 -14.61210 -14.31146 -14.23312 -13.85662 -13.57165 -13.42074 -12.96705 -12.95473 -12.85017 -12.78563 -12.53506 -12.38966 -12.17072 -12.03672 -11.85301 -11.76072 -11.41713 -10.97547 -10.92020 -10.70610 -10.22231 -10.01444 -9.37972 -8.91999 -7.90001 -5.22422 -0.44153 0.20328 0.93466 1.46622 1.47332 1.57551 1.72195 2.02818 2.23616 2.47329 2.64213 3.07226 3.29611 3.35495 3.54921 3.59741 3.70686 3.87306 3.92150 3.97356 4.25521 4.31917 4.35856 4.39161 4.47899 4.68385 4.71481 4.74835 4.80196 4.85959 4.97357 5.03595 5.06475 5.18824 5.29292 5.34876 5.42733 5.51149 5.93590 6.23851 6.46567 6.84835 6.93170 7.18735 7.60350 8.53852 9.26752 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.016142 B = 0.002475 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.146182 B =11312.295276 C =12494.663606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.306 6.306 3 C 0.184 3.816 4 C -0.212 4.212 5 C 0.027 3.973 6 Cl -0.051 7.051 7 C -0.155 4.155 8 C -0.027 4.027 9 C -0.190 4.190 10 C 0.560 3.440 11 O -0.559 6.559 12 N -0.713 5.713 13 C 0.120 3.880 14 C 0.099 3.901 15 O -0.539 6.539 16 C 0.143 3.857 17 N -0.636 5.636 18 C -0.233 4.233 19 H 0.081 0.919 20 C -0.066 4.066 21 N -0.950 5.950 22 Si 0.978 3.022 23 H -0.268 1.268 24 H -0.292 1.292 25 H -0.291 1.291 26 C 0.129 3.871 27 H 0.072 0.928 28 H 0.113 0.887 29 H 0.074 0.926 30 H 0.164 0.836 31 H 0.165 0.835 32 H 0.166 0.834 33 H 0.408 0.592 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.383 0.617 37 H 0.026 0.974 38 H 0.052 0.948 39 H 0.248 0.752 40 H 0.058 0.942 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.397 7.595 7.807 25.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.218 6.218 3 C 0.135 3.865 4 C -0.231 4.231 5 C 0.000 4.000 6 Cl -0.022 7.022 7 C -0.173 4.173 8 C -0.046 4.046 9 C -0.194 4.194 10 C 0.349 3.651 11 O -0.439 6.439 12 N -0.367 5.367 13 C -0.005 4.005 14 C 0.056 3.944 15 O -0.345 6.345 16 C 0.018 3.982 17 N -0.362 5.362 18 C -0.361 4.361 19 H 0.099 0.901 20 C -0.259 4.259 21 N -0.599 5.599 22 Si 0.807 3.193 23 H -0.192 1.192 24 H -0.219 1.219 25 H -0.218 1.218 26 C 0.003 3.997 27 H 0.090 0.910 28 H 0.132 0.868 29 H 0.092 0.908 30 H 0.182 0.818 31 H 0.183 0.817 32 H 0.183 0.817 33 H 0.246 0.754 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.232 0.768 37 H 0.043 0.957 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.076 0.924 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -23.033 6.370 7.756 25.125 hybrid contribution 0.457 0.959 -0.810 1.336 sum -22.576 7.329 6.946 24.732 Atomic orbital electron populations 1.23499 0.76354 1.05822 1.02806 1.86382 1.23380 1.25522 1.86472 1.19037 0.90911 0.85121 0.91399 1.21201 1.01888 0.89617 1.10393 1.21026 0.92456 0.87638 0.98876 1.98402 1.72124 1.35285 1.96368 1.21184 0.91182 1.00551 1.04411 1.21404 1.01492 0.89189 0.92466 1.19478 0.91124 0.94158 1.14631 1.18207 0.81986 0.88867 0.76061 1.90800 1.72201 1.30219 1.50645 1.45682 1.05539 1.10163 1.75340 1.21735 0.88356 0.87370 1.03022 1.23125 0.90599 0.92556 0.88081 1.86575 1.59859 1.36925 1.51138 1.22847 0.85609 0.97094 0.92692 1.46053 1.04365 1.35810 1.49981 1.19401 0.84517 1.12581 1.19585 0.90091 1.25581 1.02102 0.98221 0.99984 1.69975 1.34815 1.20742 1.34381 0.85011 0.79572 0.77409 0.77319 1.19220 1.21903 1.21758 1.22798 0.90320 0.92932 0.93602 0.90982 0.86825 0.90778 0.81826 0.81717 0.81691 0.75441 0.90147 0.90904 0.76809 0.95673 0.92935 0.94252 0.92356 0.91095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.81 113.37 1.11 1.23 16 2 O -0.31 -7.39 8.57 -68.75 -0.59 -7.98 16 3 C 0.18 4.07 6.70 22.84 0.15 4.22 16 4 C -0.21 -3.45 8.80 22.36 0.20 -3.26 16 5 C 0.03 0.42 6.32 22.37 0.14 0.56 16 6 Cl -0.05 -0.69 28.94 -2.72 -0.08 -0.77 16 7 C -0.15 -2.21 9.80 22.26 0.22 -1.99 16 8 C -0.03 -0.44 9.53 22.51 0.21 -0.22 16 9 C -0.19 -4.36 5.89 -20.01 -0.12 -4.47 16 10 C 0.56 16.00 7.76 86.68 0.67 16.67 16 11 O -0.56 -20.25 15.16 16.92 0.26 -19.99 16 12 N -0.71 -18.03 5.29 -466.31 -2.47 -20.49 16 13 C 0.12 3.55 5.28 86.38 0.46 4.00 16 14 C 0.10 3.50 1.52 -10.13 -0.02 3.49 16 15 O -0.54 -18.38 13.51 -148.98 -2.01 -20.39 16 16 C 0.14 6.52 6.92 86.48 0.60 7.12 16 17 N -0.64 -32.78 3.70 -720.20 -2.66 -35.44 16 18 C -0.23 -13.23 10.70 84.03 0.90 -12.33 16 19 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 20 C -0.07 -3.77 5.50 84.86 0.47 -3.30 16 21 N -0.95 -56.54 11.38 21.65 0.25 -56.29 16 22 Si 0.98 45.98 29.55 68.60 2.03 48.00 16 23 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 24 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 25 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 26 C 0.13 5.20 8.34 86.48 0.72 5.92 16 27 H 0.07 0.71 7.66 -2.39 -0.02 0.69 16 28 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.07 0.69 7.67 -2.39 -0.02 0.68 16 30 H 0.16 1.89 6.30 -2.91 -0.02 1.87 16 31 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 32 H 0.17 1.90 6.40 -2.91 -0.02 1.88 16 33 H 0.41 8.17 5.33 -92.71 -0.49 7.68 16 34 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.07 2.31 8.05 -2.39 -0.02 2.29 16 36 H 0.38 9.19 7.61 -74.06 -0.56 8.63 16 37 H 0.03 1.19 8.03 -2.39 -0.02 1.17 16 38 H 0.05 2.64 7.15 -2.39 -0.02 2.63 16 39 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 40 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.07 2.59 8.10 -2.39 -0.02 2.57 16 Total: -1.00 -77.79 361.20 0.48 -77.31 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 0.04 Total: 18.42 kcal Atomic # 6 Polarization: 11.91 SS G_CDS: 5.72 Total: 17.63 kcal Atomic # 7 Polarization: -107.34 SS G_CDS: -4.88 Total: -112.22 kcal Atomic # 8 Polarization: -46.02 SS G_CDS: -2.34 Total: -48.37 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.00 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -0.08 Total: -0.77 kcal Total: -77.79 0.48 -77.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724472813.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.123 kcal (2) G-P(sol) polarization free energy of solvation -77.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds