Wall clock time and date at job start Sat Apr 11 2020 05:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.99627 * 2 1 4 4 C 1.54333 * 109.99247 * 238.96227 * 2 1 3 5 5 H 1.08993 * 111.00254 * 100.12296 * 4 2 1 6 6 N 1.46498 * 110.51404 * 336.97443 * 4 2 1 7 7 C 1.34782 * 119.99999 * 97.42215 * 6 4 2 8 8 O 1.21282 * 119.99600 * 359.97438 * 7 6 4 9 9 C 1.50699 * 120.00117 * 179.97438 * 7 6 4 10 10 S 1.80999 * 109.46989 * 179.97438 * 9 7 6 11 11 C 1.76203 * 99.99853 * 180.02562 * 10 9 7 12 12 H 1.07999 * 119.99903 * 0.02562 * 11 10 9 13 13 C 1.38801 * 119.99644 * 180.02562 * 11 10 9 14 14 N 1.31637 * 119.99508 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 120.00413 * 359.97438 * 13 11 10 16 16 H 1.48492 * 109.47159 * 90.00136 * 15 13 11 17 17 H 1.48494 * 109.47108 * 210.00382 * 15 13 11 18 18 H 1.48501 * 109.46936 * 330.00452 * 15 13 11 19 19 C 1.55160 * 103.02004 * 218.66567 * 4 2 1 20 20 C 1.54914 * 101.57968 * 35.30537 * 19 4 2 21 21 N 1.47025 * 109.88126 * 121.09119 * 2 1 3 22 22 C 1.34778 * 125.64868 * 298.39786 * 21 2 1 23 23 O 1.21495 * 120.00129 * 359.71558 * 22 21 2 24 24 C 1.48277 * 119.99620 * 179.71678 * 22 21 2 25 25 C 1.47492 * 128.71178 * 179.69767 * 24 22 21 26 26 N 1.30639 * 102.71760 * 180.25670 * 25 24 22 27 27 O 1.20841 * 109.62144 * 0.02562 * 26 25 24 28 28 N 1.20904 * 115.90614 * 0.02562 * 27 26 25 29 29 H 1.09002 * 109.47170 * 304.39461 * 1 2 3 30 30 H 1.08997 * 109.46949 * 64.39230 * 1 2 3 31 31 H 1.08998 * 109.47003 * 184.39763 * 1 2 3 32 32 H 0.96995 * 120.00350 * 277.42185 * 6 4 2 33 33 H 1.08990 * 109.47371 * 300.00118 * 9 7 6 34 34 H 1.09004 * 109.47013 * 60.00295 * 9 7 6 35 35 H 0.97003 * 119.99732 * 180.02562 * 14 13 11 36 36 H 1.08993 * 111.00262 * 277.23489 * 19 4 2 37 37 H 1.08996 * 110.99915 * 153.37779 * 19 4 2 38 38 H 1.08998 * 110.36286 * 204.15264 * 20 19 4 39 39 H 1.09002 * 110.36852 * 81.83022 * 20 19 4 40 40 H 1.07997 * 128.64034 * 0.25999 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0577 -0.7478 -1.2427 5 1 2.3593 -0.0473 -2.0213 6 7 1.0466 -1.6790 -1.7493 7 6 0.2500 -1.3166 -2.7743 8 8 0.3700 -0.2193 -3.2769 9 6 -0.7898 -2.2747 -3.2958 10 16 -1.6914 -1.5017 -4.6617 11 6 -2.8086 -2.8028 -5.0660 12 1 -2.7827 -3.7288 -4.5108 13 6 -3.7219 -2.6377 -6.0981 14 7 -4.5568 -3.6096 -6.3999 15 14 -3.7671 -1.0358 -7.0580 16 1 -2.8471 -1.1288 -8.2199 17 1 -5.1493 -0.7863 -7.5398 18 1 -3.3407 0.0812 -6.1772 19 6 3.2865 -1.5183 -0.6914 20 6 2.8099 -1.8825 0.7370 21 7 2.0301 -0.7140 1.1840 22 6 1.8074 -0.3619 2.4658 23 8 1.1463 0.6257 2.7184 24 6 2.3692 -1.1798 3.5676 25 6 2.2525 -0.9717 5.0230 26 7 2.9341 -1.9729 5.5124 27 8 3.3727 -2.6452 4.6091 28 7 3.1030 -2.2696 3.4919 29 1 -0.3633 0.5805 0.8480 30 1 -0.3633 0.4442 -0.9267 31 1 -0.3633 -1.0246 0.0788 32 1 0.9503 -2.5564 -1.3471 33 1 -0.3021 -3.1828 -3.6498 34 1 -1.4871 -2.5247 -2.4961 35 1 -5.1948 -3.4944 -7.1214 36 1 4.1670 -0.8768 -0.6578 37 1 3.4807 -2.4155 -1.2790 38 1 3.6656 -2.0411 1.3933 39 1 2.1801 -2.7718 0.7116 40 1 1.7328 -0.1868 5.5525 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001738935025.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:13 Heat of formation + Delta-G solvation = 61.757123 kcal Electronic energy + Delta-G solvation = -26825.094415 eV Core-core repulsion = 22772.356484 eV Total energy + Delta-G solvation = -4052.737930 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -47.41759 -41.04915 -39.44616 -37.80746 -35.35318 -35.01124 -34.12187 -32.47419 -31.74791 -31.33773 -29.06552 -26.57417 -26.07805 -25.62226 -24.61680 -23.14703 -21.71535 -20.83788 -19.81482 -19.53773 -18.60118 -18.11910 -17.71863 -17.16467 -16.38027 -15.99440 -15.79976 -15.51921 -15.18563 -14.99902 -14.52566 -14.17971 -13.87552 -13.72367 -13.57497 -13.39319 -13.25903 -12.83284 -12.61264 -12.47529 -12.18135 -11.93583 -11.88159 -11.73810 -11.50271 -11.32478 -11.30342 -11.20211 -11.04103 -10.77503 -10.64513 -9.90085 -9.66235 -9.29084 -9.14669 -9.03361 -8.55650 -6.96622 -6.32456 -4.04812 0.23206 0.82432 1.97268 2.44125 2.66420 2.81293 2.86170 2.98282 3.20911 3.30297 3.34497 3.47151 3.57577 3.95066 3.98588 4.25211 4.29461 4.32286 4.55360 4.66372 4.71234 4.83346 4.92434 5.06192 5.06688 5.12661 5.20192 5.32492 5.42099 5.50982 5.57186 5.68461 5.79142 5.93784 5.97859 6.18678 6.37008 6.81210 7.38671 7.44279 7.89496 7.90482 8.34256 8.37997 9.13519 10.76731 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.024446 B = 0.002240 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.088426 B =12496.555863 C =12612.355856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.126 3.874 3 H 0.091 0.909 4 C 0.138 3.862 5 H 0.120 0.880 6 N -0.727 5.727 7 C 0.536 3.464 8 O -0.515 6.515 9 C -0.125 4.125 10 S -0.139 6.139 11 C -0.522 4.522 12 H 0.088 0.912 13 C 0.095 3.905 14 N -0.880 5.880 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.235 1.235 19 C -0.140 4.140 20 C 0.091 3.909 21 N -0.596 5.596 22 C 0.618 3.382 23 O -0.508 6.508 24 C -0.035 4.035 25 C 0.038 3.962 26 N -0.352 5.352 27 O 0.340 5.660 28 N -0.320 5.320 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.400 0.600 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.271 0.729 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.802 2.747 20.781 28.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.022 3.978 3 H 0.109 0.891 4 C 0.032 3.968 5 H 0.138 0.862 6 N -0.380 5.380 7 C 0.322 3.678 8 O -0.388 6.388 9 C -0.276 4.276 10 S 0.087 5.913 11 C -0.670 4.670 12 H 0.106 0.894 13 C -0.113 4.113 14 N -0.516 5.516 15 Si 0.682 3.318 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.159 1.159 19 C -0.179 4.179 20 C -0.031 4.031 21 N -0.330 5.330 22 C 0.402 3.598 23 O -0.382 6.382 24 C -0.201 4.201 25 C -0.148 4.148 26 N -0.075 5.075 27 O 0.115 5.885 28 N -0.041 5.041 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.234 0.766 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.081 0.919 36 H 0.112 0.888 37 H 0.117 0.883 38 H 0.110 0.890 39 H 0.094 0.906 40 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 19.119 4.106 20.157 28.084 hybrid contribution -0.986 -0.568 0.228 1.161 sum 18.132 3.539 20.386 27.512 Atomic orbital electron populations 1.22054 0.93240 1.02738 1.03642 1.22220 0.96172 0.96446 0.82921 0.89129 1.21917 0.87561 0.92465 0.94905 0.86228 1.45915 1.37178 1.18779 1.36170 1.20295 0.81034 0.87962 0.78475 1.90711 1.68677 1.22049 1.57409 1.23282 0.99288 1.01455 1.03569 1.84795 1.42455 1.25044 1.39021 1.22304 1.20574 1.01695 1.22409 0.89392 1.24723 0.93866 0.96912 0.95841 1.69941 1.19901 1.32076 1.29678 0.86731 0.78409 0.84772 0.81914 1.19200 1.19929 1.15916 1.23157 0.97720 1.02230 0.94778 1.22627 0.96074 0.88206 0.96238 1.48416 1.51646 1.28503 1.04403 1.16016 0.80466 0.83378 0.79891 1.90866 1.38988 1.25750 1.82568 1.26203 1.02037 0.95621 0.96201 1.27759 0.98746 0.98578 0.89707 1.75098 1.11777 1.05522 1.15074 1.85103 1.53956 1.42751 1.06739 1.75450 1.12168 1.11676 1.04820 0.91455 0.90366 0.92243 0.76556 0.88427 0.88470 0.91907 0.88849 0.88325 0.88960 0.90578 0.75574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 8.07 37.16 0.30 -1.61 16 2 C 0.13 1.24 3.43 -66.94 -0.23 1.01 16 3 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 4 C 0.14 1.23 3.31 -66.09 -0.22 1.02 16 5 H 0.12 1.22 7.38 -51.93 -0.38 0.84 16 6 N -0.73 -7.58 3.76 -52.03 -0.20 -7.77 16 7 C 0.54 8.33 6.65 -10.98 -0.07 8.26 16 8 O -0.51 -9.86 14.96 5.56 0.08 -9.77 16 9 C -0.13 -2.24 6.16 36.01 0.22 -2.02 16 10 S -0.14 -3.39 18.55 -107.50 -1.99 -5.39 16 11 C -0.52 -14.69 10.04 30.94 0.31 -14.38 16 12 H 0.09 2.58 8.03 -52.49 -0.42 2.16 16 13 C 0.10 2.75 5.50 -17.43 -0.10 2.65 16 14 N -0.88 -26.21 13.97 55.49 0.78 -25.43 16 15 Si 0.86 21.42 27.74 -169.99 -4.72 16.71 16 16 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.24 -5.85 6.74 56.52 0.38 -5.47 16 19 C -0.14 -0.80 6.70 -24.58 -0.16 -0.97 16 20 C 0.09 0.58 6.15 -2.53 -0.02 0.57 16 21 N -0.60 -5.29 3.06 -163.95 -0.50 -5.79 16 22 C 0.62 6.28 7.66 -12.13 -0.09 6.19 16 23 O -0.51 -6.54 16.16 5.37 0.09 -6.45 16 24 C -0.04 -0.29 7.33 -80.07 -0.59 -0.88 16 25 C 0.04 0.25 12.63 -14.29 -0.18 0.07 16 26 N -0.35 -2.63 12.22 30.71 0.38 -2.25 16 27 O 0.34 2.52 11.65 27.26 0.32 2.84 16 28 N -0.32 -2.45 9.70 33.49 0.32 -2.13 16 29 H 0.07 0.87 7.01 -51.93 -0.36 0.51 16 30 H 0.08 1.11 6.96 -51.93 -0.36 0.74 16 31 H 0.06 0.70 7.54 -51.93 -0.39 0.31 16 32 H 0.40 3.24 8.65 -40.82 -0.35 2.89 16 33 H 0.10 1.62 8.14 -51.92 -0.42 1.19 16 34 H 0.10 1.64 8.14 -51.91 -0.42 1.22 16 35 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.09 0.56 6.31 -51.93 -0.33 0.23 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.23 0.86 8.06 -52.49 -0.42 0.43 16 LS Contribution 353.47 15.07 5.33 5.33 Total: -1.00 -34.14 353.47 -5.66 -39.80 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -4.72 Total: 0.41 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -0.83 Total: -0.10 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: 0.78 Total: -43.38 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: 0.49 Total: -13.38 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.72 Total: 16.71 kcal Atomic # 16 Polarization: -3.39 SS G_CDS: -1.99 Total: -5.39 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.14 -5.66 -39.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738935025.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.555 kcal (2) G-P(sol) polarization free energy of solvation -34.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds