Wall clock time and date at job start Sat Apr 11 2020 05:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.99627 * 2 1 4 4 C 1.54333 * 109.99247 * 238.96227 * 2 1 3 5 5 H 1.08993 * 111.00254 * 100.12296 * 4 2 1 6 6 N 1.46498 * 110.51404 * 336.97443 * 4 2 1 7 7 C 1.34782 * 119.99999 * 97.42215 * 6 4 2 8 8 O 1.21282 * 119.99600 * 359.97438 * 7 6 4 9 9 C 1.50699 * 120.00117 * 179.97438 * 7 6 4 10 10 S 1.80999 * 109.46989 * 179.97438 * 9 7 6 11 11 C 1.76203 * 99.99853 * 180.02562 * 10 9 7 12 12 H 1.07999 * 119.99903 * 0.02562 * 11 10 9 13 13 C 1.38801 * 119.99644 * 180.02562 * 11 10 9 14 14 N 1.31637 * 119.99508 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 120.00413 * 359.97438 * 13 11 10 16 16 H 1.48492 * 109.47159 * 90.00136 * 15 13 11 17 17 H 1.48494 * 109.47108 * 210.00382 * 15 13 11 18 18 H 1.48501 * 109.46936 * 330.00452 * 15 13 11 19 19 C 1.55160 * 103.02004 * 218.66567 * 4 2 1 20 20 C 1.54914 * 101.57968 * 35.30537 * 19 4 2 21 21 N 1.47025 * 109.88126 * 121.09119 * 2 1 3 22 22 C 1.34778 * 125.64868 * 298.39786 * 21 2 1 23 23 O 1.21495 * 120.00129 * 359.71558 * 22 21 2 24 24 C 1.48277 * 119.99620 * 179.71678 * 22 21 2 25 25 C 1.47492 * 128.71178 * 179.69767 * 24 22 21 26 26 N 1.30639 * 102.71760 * 180.25670 * 25 24 22 27 27 O 1.20841 * 109.62144 * 0.02562 * 26 25 24 28 28 N 1.20904 * 115.90614 * 0.02562 * 27 26 25 29 29 H 1.09002 * 109.47170 * 304.39461 * 1 2 3 30 30 H 1.08997 * 109.46949 * 64.39230 * 1 2 3 31 31 H 1.08998 * 109.47003 * 184.39763 * 1 2 3 32 32 H 0.96995 * 120.00350 * 277.42185 * 6 4 2 33 33 H 1.08990 * 109.47371 * 300.00118 * 9 7 6 34 34 H 1.09004 * 109.47013 * 60.00295 * 9 7 6 35 35 H 0.97003 * 119.99732 * 180.02562 * 14 13 11 36 36 H 1.08993 * 111.00262 * 277.23489 * 19 4 2 37 37 H 1.08996 * 110.99915 * 153.37779 * 19 4 2 38 38 H 1.08998 * 110.36286 * 204.15264 * 20 19 4 39 39 H 1.09002 * 110.36852 * 81.83022 * 20 19 4 40 40 H 1.07997 * 128.64034 * 0.25999 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0577 -0.7478 -1.2427 5 1 2.3593 -0.0473 -2.0213 6 7 1.0466 -1.6790 -1.7493 7 6 0.2500 -1.3166 -2.7743 8 8 0.3700 -0.2193 -3.2769 9 6 -0.7898 -2.2747 -3.2958 10 16 -1.6914 -1.5017 -4.6617 11 6 -2.8086 -2.8028 -5.0660 12 1 -2.7827 -3.7288 -4.5108 13 6 -3.7219 -2.6377 -6.0981 14 7 -4.5568 -3.6096 -6.3999 15 14 -3.7671 -1.0358 -7.0580 16 1 -2.8471 -1.1288 -8.2199 17 1 -5.1493 -0.7863 -7.5398 18 1 -3.3407 0.0812 -6.1772 19 6 3.2865 -1.5183 -0.6914 20 6 2.8099 -1.8825 0.7370 21 7 2.0301 -0.7140 1.1840 22 6 1.8074 -0.3619 2.4658 23 8 1.1463 0.6257 2.7184 24 6 2.3692 -1.1798 3.5676 25 6 2.2525 -0.9717 5.0230 26 7 2.9341 -1.9729 5.5124 27 8 3.3727 -2.6452 4.6091 28 7 3.1030 -2.2696 3.4919 29 1 -0.3633 0.5805 0.8480 30 1 -0.3633 0.4442 -0.9267 31 1 -0.3633 -1.0246 0.0788 32 1 0.9503 -2.5564 -1.3471 33 1 -0.3021 -3.1828 -3.6498 34 1 -1.4871 -2.5247 -2.4961 35 1 -5.1948 -3.4944 -7.1214 36 1 4.1670 -0.8768 -0.6578 37 1 3.4807 -2.4155 -1.2790 38 1 3.6656 -2.0411 1.3933 39 1 2.1801 -2.7718 0.7116 40 1 1.7328 -0.1868 5.5525 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001738935025.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:13 Heat of formation + Delta-G solvation = 37.422152 kcal Electronic energy + Delta-G solvation = -26826.149658 eV Core-core repulsion = 22772.356484 eV Total energy + Delta-G solvation = -4053.793174 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -47.99408 -41.88034 -40.50919 -38.74071 -35.99293 -35.60995 -35.08215 -34.66318 -32.50591 -32.33848 -30.29971 -27.86542 -27.23178 -26.85755 -25.21728 -23.79978 -22.60417 -21.82261 -20.60223 -20.11769 -19.92219 -19.18999 -18.61764 -18.12733 -17.56289 -17.11088 -16.81245 -16.72654 -16.61474 -15.86617 -15.69321 -15.19378 -15.07012 -14.91752 -14.77882 -14.41973 -14.24233 -13.92903 -13.64321 -13.34602 -13.30927 -13.10060 -13.00818 -12.74128 -12.71598 -12.48204 -12.39073 -12.17149 -12.06532 -11.87918 -11.85379 -11.60979 -11.16638 -11.00002 -10.52435 -10.24157 -9.96000 -8.97977 -8.51265 -6.21384 -0.40727 0.28289 0.99629 1.26124 1.31637 1.47100 1.55974 1.56787 1.70704 2.18361 2.24441 2.25935 2.43923 2.71911 2.77080 2.87194 3.31329 3.32989 3.62016 3.69845 3.85454 3.91272 4.08644 4.18954 4.24276 4.26667 4.40271 4.45311 4.48622 4.60939 4.73821 4.84877 4.95748 5.00962 5.10451 5.16618 5.43201 5.70946 6.09252 6.12047 6.42919 6.63558 6.94137 7.18263 7.31798 8.61073 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.024446 B = 0.002240 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.088426 B =12496.555863 C =12612.355856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.128 3.872 3 H 0.088 0.912 4 C 0.138 3.862 5 H 0.111 0.889 6 N -0.702 5.702 7 C 0.544 3.456 8 O -0.553 6.553 9 C -0.114 4.114 10 S -0.173 6.173 11 C -0.528 4.528 12 H 0.062 0.938 13 C 0.044 3.956 14 N -0.918 5.918 15 Si 0.914 3.086 16 H -0.261 1.261 17 H -0.262 1.262 18 H -0.236 1.236 19 C -0.124 4.124 20 C 0.089 3.911 21 N -0.593 5.593 22 C 0.616 3.384 23 O -0.543 6.543 24 C -0.048 4.048 25 C 0.049 3.951 26 N -0.360 5.360 27 O 0.344 5.656 28 N -0.314 5.314 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.416 0.584 33 H 0.115 0.885 34 H 0.109 0.891 35 H 0.276 0.724 36 H 0.110 0.890 37 H 0.119 0.881 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.838 2.583 21.847 30.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.025 3.975 3 H 0.106 0.894 4 C 0.032 3.968 5 H 0.129 0.871 6 N -0.355 5.355 7 C 0.330 3.670 8 O -0.431 6.431 9 C -0.265 4.265 10 S 0.054 5.946 11 C -0.676 4.676 12 H 0.080 0.920 13 C -0.161 4.161 14 N -0.556 5.556 15 Si 0.736 3.264 16 H -0.186 1.186 17 H -0.186 1.186 18 H -0.160 1.160 19 C -0.162 4.162 20 C -0.033 4.033 21 N -0.326 5.326 22 C 0.402 3.598 23 O -0.419 6.419 24 C -0.213 4.213 25 C -0.137 4.137 26 N -0.084 5.084 27 O 0.117 5.883 28 N -0.034 5.034 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.253 0.747 33 H 0.133 0.867 34 H 0.127 0.873 35 H 0.086 0.914 36 H 0.128 0.872 37 H 0.137 0.863 38 H 0.119 0.881 39 H 0.104 0.896 40 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 21.193 3.889 21.242 30.257 hybrid contribution -1.533 -0.600 0.061 1.647 sum 19.660 3.289 21.303 29.174 Atomic orbital electron populations 1.21933 0.94982 1.02229 1.01779 1.22088 0.94647 0.96877 0.83922 0.89396 1.22010 0.88178 0.92497 0.94091 0.87097 1.45638 1.36034 1.19612 1.34234 1.19820 0.81041 0.86776 0.79382 1.90708 1.69863 1.23369 1.59118 1.23278 0.99711 1.02132 1.01329 1.84698 1.42646 1.24840 1.42419 1.22473 1.21329 1.01843 1.21922 0.92000 1.25583 0.93678 0.99962 0.96926 1.70024 1.20877 1.33996 1.30686 0.85862 0.78997 0.80930 0.80563 1.18600 1.18632 1.15968 1.23167 0.96309 1.02819 0.93878 1.22830 0.96265 0.87464 0.96730 1.48445 1.51383 1.28959 1.03809 1.16218 0.80023 0.83111 0.80466 1.90849 1.40585 1.27275 1.83174 1.25990 1.02929 0.95998 0.96357 1.28177 0.97881 0.98539 0.89071 1.75120 1.12334 1.05906 1.15072 1.85102 1.53837 1.42695 1.06642 1.75423 1.11674 1.11256 1.05027 0.92766 0.92648 0.92088 0.74710 0.86650 0.87273 0.91431 0.87190 0.86308 0.88068 0.89594 0.73259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 8.07 71.98 0.58 -3.02 16 2 C 0.13 2.38 3.43 45.35 0.16 2.53 16 3 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 4 C 0.14 2.16 3.31 46.18 0.15 2.31 16 5 H 0.11 2.07 7.38 -2.39 -0.02 2.05 16 6 N -0.70 -13.00 3.76 -436.90 -1.64 -14.64 16 7 C 0.54 16.16 6.65 87.66 0.58 16.74 16 8 O -0.55 -20.87 14.96 -3.04 -0.05 -20.92 16 9 C -0.11 -3.93 6.16 71.24 0.44 -3.49 16 10 S -0.17 -8.36 18.55 -56.49 -1.05 -9.41 16 11 C -0.53 -30.08 10.04 67.95 0.68 -29.39 16 12 H 0.06 3.72 8.03 -2.91 -0.02 3.70 16 13 C 0.04 2.54 5.50 84.86 0.47 3.00 16 14 N -0.92 -55.41 13.97 21.65 0.30 -55.11 16 15 Si 0.91 44.40 27.74 68.60 1.90 46.31 16 16 H -0.26 -12.34 7.11 99.48 0.71 -11.63 16 17 H -0.26 -12.02 7.11 99.48 0.71 -11.32 16 18 H -0.24 -11.39 6.74 99.48 0.67 -10.72 16 19 C -0.12 -0.95 6.70 31.99 0.21 -0.74 16 20 C 0.09 0.85 6.15 86.86 0.53 1.38 16 21 N -0.59 -9.42 3.06 -790.91 -2.42 -11.84 16 22 C 0.62 11.76 7.66 86.91 0.67 12.42 16 23 O -0.54 -13.76 16.16 -3.70 -0.06 -13.82 16 24 C -0.05 -0.71 7.33 44.29 0.32 -0.39 16 25 C 0.05 0.56 12.63 87.31 1.10 1.66 16 26 N -0.36 -4.70 12.22 -61.43 -0.75 -5.45 16 27 O 0.34 4.41 11.65 140.85 1.64 6.05 16 28 N -0.31 -4.12 9.70 -52.05 -0.50 -4.63 16 29 H 0.05 1.43 7.01 -2.39 -0.02 1.41 16 30 H 0.05 1.58 6.96 -2.39 -0.02 1.57 16 31 H 0.06 1.38 7.54 -2.39 -0.02 1.37 16 32 H 0.42 5.37 8.65 -92.71 -0.80 4.57 16 33 H 0.12 3.61 8.14 -2.40 -0.02 3.59 16 34 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 35 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 36 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.10 0.88 6.31 -2.39 -0.02 0.86 16 39 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.25 1.37 8.06 -2.91 -0.02 1.35 16 Total: -1.00 -75.48 353.47 3.54 -71.94 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: 0.26 Total: 8.49 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: 5.90 Total: 3.04 kcal Atomic # 7 Polarization: -86.66 SS G_CDS: -5.02 Total: -91.68 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: 1.54 Total: -28.69 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.90 Total: 46.31 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.05 Total: -9.41 kcal Total: -75.48 3.54 -71.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738935025.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.361 kcal (2) G-P(sol) polarization free energy of solvation -75.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds