Wall clock time and date at job start Sat Apr 11 2020 05:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35673 * 116.99899 * 2 1 4 4 C 1.39487 * 120.00804 * 180.02562 * 3 2 1 5 5 N 1.31958 * 120.11184 * 179.97438 * 4 3 2 6 6 C 1.32194 * 120.13961 * 359.97438 * 5 4 3 7 7 C 1.39238 * 120.02177 * 0.02562 * 6 5 4 8 8 C 1.48137 * 120.04994 * 179.97438 * 7 6 5 9 9 O 1.21517 * 120.00460 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99580 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00097 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47559 * 179.97438 * 11 10 8 13 13 N 1.46497 * 109.47168 * 180.02562 * 12 11 10 14 14 C 1.34778 * 119.99706 * 180.02562 * 13 12 11 15 15 O 1.21284 * 119.99989 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00109 * 179.97438 * 14 13 12 17 17 S 1.80991 * 109.47395 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00331 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99924 * 359.97438 * 18 17 16 20 20 C 1.38799 * 120.00253 * 179.97438 * 18 17 16 21 21 N 1.31628 * 120.00283 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99811 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47566 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46872 * 120.00155 * 22 20 18 25 25 H 1.48504 * 109.47373 * 240.00103 * 22 20 18 26 26 N 1.32163 * 120.00927 * 359.97438 * 3 2 1 27 27 H 1.09005 * 109.46936 * 60.00093 * 1 2 3 28 28 H 1.08998 * 109.47325 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47521 * 300.00156 * 1 2 3 30 30 H 1.07997 * 119.94990 * 359.97257 * 4 3 2 31 31 H 1.08004 * 119.98496 * 180.02562 * 6 5 4 32 32 H 0.97005 * 120.00156 * 359.97438 * 10 8 7 33 33 H 1.09003 * 109.46968 * 300.00095 * 11 10 8 34 34 H 1.09004 * 109.47001 * 59.99710 * 11 10 8 35 35 H 1.08998 * 109.46654 * 299.99906 * 12 11 10 36 36 H 1.09000 * 109.47079 * 59.99119 * 12 11 10 37 37 H 0.96996 * 120.00440 * 359.97438 * 13 12 11 38 38 H 1.09003 * 109.47068 * 300.00191 * 16 14 13 39 39 H 1.09004 * 109.46888 * 59.99798 * 16 14 13 40 40 H 0.96999 * 120.00246 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4379 1.2821 -0.0005 5 7 4.0390 2.4568 -0.0011 6 6 3.3238 3.5685 -0.0016 7 6 1.9330 3.5020 -0.0010 8 6 1.1308 4.7474 -0.0010 9 8 1.6864 5.8281 -0.0020 10 7 -0.2154 4.6818 0.0000 11 6 -1.0088 5.9133 -0.0006 12 6 -2.4976 5.5610 0.0002 13 7 -3.2909 6.7925 -0.0010 14 6 -4.6371 6.7269 0.0000 15 8 -5.1917 5.6483 0.0013 16 6 -5.4533 7.9938 -0.0007 17 16 -7.2145 7.5769 0.0016 18 6 -7.9120 9.1949 -0.0003 19 1 -7.2669 10.0611 -0.0019 20 6 -9.2906 9.3564 0.0001 21 7 -10.0770 8.3009 0.0025 22 14 -10.0300 11.0719 -0.0012 23 1 -8.9402 12.0807 -0.0033 24 1 -10.8693 11.2481 -1.2135 25 1 -10.8682 11.2507 1.2115 26 7 1.3253 2.3174 -0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 4.0254 0.3759 -0.0005 31 1 3.8184 4.5286 -0.0024 32 1 -0.6590 3.8191 0.0004 33 1 -0.7729 6.4979 0.8887 34 1 -0.7742 6.4963 -0.8913 35 1 -2.7331 4.9767 -0.8893 36 1 -2.7325 4.9777 0.8906 37 1 -2.8475 7.6552 -0.0017 38 1 -5.2175 8.5783 0.8886 39 1 -5.2186 8.5767 -0.8914 40 1 -11.0404 8.4137 0.0033 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001740480555.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:15 Heat of formation + Delta-G solvation = -87.126019 kcal Electronic energy + Delta-G solvation = -24971.235240 eV Core-core repulsion = 20912.041252 eV Total energy + Delta-G solvation = -4059.193988 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.61878 -40.89637 -40.48628 -39.38111 -37.07481 -35.63915 -34.91010 -34.57925 -32.42997 -31.61168 -29.43175 -28.59241 -27.65714 -26.48460 -24.92782 -23.83161 -22.44906 -21.68096 -20.02151 -19.74572 -19.46805 -18.03158 -17.92985 -17.74263 -17.49895 -17.10231 -17.09142 -16.87578 -16.73740 -16.37876 -15.73556 -15.53392 -15.48800 -15.15689 -14.83071 -14.70815 -14.40096 -14.13006 -13.70404 -13.21511 -13.15543 -12.95527 -12.93709 -12.87142 -12.75773 -12.65924 -12.58898 -12.11803 -11.85012 -11.70850 -11.15619 -11.04454 -10.51482 -10.39737 -10.27009 -10.18579 -9.92132 -8.65976 -8.34790 -6.12328 -0.83523 -0.14846 1.23368 1.41695 1.42982 1.46916 1.55029 1.58445 1.69997 1.76887 2.27022 2.36273 2.53400 2.69855 2.99742 3.09776 3.25397 3.32641 3.53829 3.77298 3.95999 3.97801 3.99946 4.29482 4.31957 4.35603 4.38867 4.40010 4.53409 4.74965 4.77817 4.80528 4.89871 5.08951 5.34282 5.43032 5.74966 5.87113 6.18107 6.20479 6.43719 6.46062 6.85518 7.07153 7.19523 8.74590 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.026680 B = 0.001597 C = 0.001510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.206475 B =17524.779668 C =18542.934683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.299 6.299 3 C 0.270 3.730 4 C 0.082 3.918 5 N -0.418 5.418 6 C 0.066 3.934 7 C 0.061 3.939 8 C 0.580 3.420 9 O -0.548 6.548 10 N -0.697 5.697 11 C 0.117 3.883 12 C 0.115 3.885 13 N -0.711 5.711 14 C 0.538 3.462 15 O -0.562 6.562 16 C -0.131 4.131 17 S -0.151 6.151 18 C -0.546 4.546 19 H 0.083 0.917 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 0.998 3.002 23 H -0.257 1.257 24 H -0.275 1.275 25 H -0.274 1.274 26 N -0.480 5.480 27 H 0.062 0.938 28 H 0.126 0.874 29 H 0.062 0.938 30 H 0.215 0.785 31 H 0.193 0.807 32 H 0.419 0.581 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.420 0.580 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.027 -13.104 -0.010 31.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.203 6.203 3 C 0.084 3.916 4 C -0.084 4.084 5 N -0.131 5.131 6 C -0.091 4.091 7 C -0.078 4.078 8 C 0.363 3.637 9 O -0.425 6.425 10 N -0.349 5.349 11 C -0.007 4.007 12 C -0.010 4.010 13 N -0.366 5.366 14 C 0.323 3.677 15 O -0.440 6.440 16 C -0.282 4.282 17 S 0.076 5.924 18 C -0.694 4.694 19 H 0.102 0.898 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.820 3.180 23 H -0.180 1.180 24 H -0.200 1.200 25 H -0.200 1.200 26 N -0.213 5.213 27 H 0.081 0.919 28 H 0.144 0.856 29 H 0.081 0.919 30 H 0.231 0.769 31 H 0.210 0.790 32 H 0.256 0.744 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.257 0.743 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 28.407 -14.401 -0.007 31.849 hybrid contribution -0.593 1.967 -0.003 2.054 sum 27.815 -12.434 -0.010 30.468 Atomic orbital electron populations 1.23235 0.75204 1.05502 1.02739 1.86313 1.24655 1.22343 1.86986 1.21185 0.91615 0.85376 0.93410 1.23826 0.89719 0.98504 0.96351 1.68739 1.38125 0.98037 1.08240 1.23797 0.90442 0.99248 0.95628 1.21694 0.93527 0.91113 1.01492 1.17669 0.82317 0.86993 0.76672 1.90830 1.71773 1.28959 1.50941 1.45549 1.05333 1.11039 1.72994 1.21454 0.88080 0.86710 1.04427 1.21352 0.89060 0.87310 1.03233 1.45476 1.04574 1.10598 1.75940 1.20008 0.82766 0.89914 0.74971 1.90702 1.71953 1.31399 1.49960 1.23379 0.98798 0.98985 1.07066 1.85552 0.96533 1.13231 1.97059 1.23250 0.94951 0.92471 1.58697 0.89845 1.26110 0.96532 1.02708 0.93779 1.70181 1.04777 1.31697 1.48105 0.84915 0.78239 0.76818 0.78034 1.18042 1.19999 1.19991 1.67868 1.40494 0.98230 1.14740 0.91946 0.85574 0.91936 0.76872 0.79039 0.74377 0.89471 0.89481 0.90977 0.90971 0.74288 0.86993 0.86989 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.39 113.37 1.18 1.40 16 2 O -0.30 -3.38 10.49 -89.90 -0.94 -4.32 16 3 C 0.27 3.51 7.50 84.94 0.64 4.15 16 4 C 0.08 0.89 11.18 84.98 0.95 1.84 16 5 N -0.42 -5.97 10.48 -193.72 -2.03 -8.00 16 6 C 0.07 0.99 10.76 84.88 0.91 1.91 16 7 C 0.06 0.98 6.75 41.82 0.28 1.26 16 8 C 0.58 10.41 7.81 86.87 0.68 11.09 16 9 O -0.55 -12.58 16.34 -3.77 -0.06 -12.64 16 10 N -0.70 -10.17 5.55 -465.69 -2.58 -12.76 16 11 C 0.12 1.64 5.79 86.38 0.50 2.14 16 12 C 0.11 2.07 5.79 86.38 0.50 2.57 16 13 N -0.71 -15.49 5.56 -463.07 -2.57 -18.06 16 14 C 0.54 18.35 7.85 87.66 0.69 19.04 16 15 O -0.56 -24.48 15.86 -3.04 -0.05 -24.53 16 16 C -0.13 -4.92 6.16 71.24 0.44 -4.48 16 17 S -0.15 -8.17 20.57 -56.49 -1.16 -9.34 16 18 C -0.55 -30.66 9.50 67.95 0.65 -30.01 16 19 H 0.08 4.35 7.80 -2.91 -0.02 4.32 16 20 C 0.01 0.76 5.49 84.86 0.47 1.22 16 21 N -0.91 -55.34 13.22 21.65 0.29 -55.05 16 22 Si 1.00 43.11 29.55 68.60 2.03 45.14 16 23 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 24 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 25 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 26 N -0.48 -7.10 8.60 -297.47 -2.56 -9.66 16 27 H 0.06 0.53 8.11 -2.38 -0.02 0.51 16 28 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.06 0.53 8.11 -2.39 -0.02 0.51 16 30 H 0.21 0.85 8.06 -2.91 -0.02 0.82 16 31 H 0.19 2.54 7.64 -2.91 -0.02 2.52 16 32 H 0.42 5.21 7.82 -92.70 -0.73 4.48 16 33 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 35 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.42 6.30 8.47 -92.71 -0.79 5.52 16 38 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 39 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 40 H 0.27 15.24 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -80.14 373.83 -2.17 -82.31 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -0.40 Total: 14.80 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: 7.88 Total: 12.11 kcal Atomic # 7 Polarization: -94.07 SS G_CDS: -9.46 Total: -103.53 kcal Atomic # 8 Polarization: -40.44 SS G_CDS: -1.05 Total: -41.49 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: -8.17 SS G_CDS: -1.16 Total: -9.34 kcal Total: -80.14 -2.17 -82.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001740480555.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.813 kcal (2) G-P(sol) polarization free energy of solvation -80.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds