Wall clock time and date at job start Sat Apr 11 2020 05:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 109.46604 * 2 1 4 4 C 1.52999 * 109.46984 * 120.00375 * 2 1 3 5 5 N 1.46506 * 109.46684 * 175.00142 * 4 2 1 6 6 C 1.34777 * 119.99873 * 180.02562 * 5 4 2 7 7 O 1.21592 * 119.99797 * 359.97438 * 6 5 4 8 8 C 1.47576 * 120.00051 * 179.97438 * 6 5 4 9 9 C 1.38045 * 119.72566 * 179.72554 * 8 6 5 10 10 N 1.34876 * 119.94649 * 179.74612 * 9 8 6 11 11 H 0.97003 * 120.31209 * 180.23136 * 10 9 8 12 12 C 1.34962 * 119.38267 * 0.52361 * 10 9 8 13 13 O 1.21861 * 120.26776 * 179.70640 * 12 10 9 14 14 C 1.41787 * 119.45714 * 359.72346 * 12 10 9 15 15 N 1.30598 * 120.03814 * 0.02562 * 14 12 10 16 16 N 1.46497 * 109.46622 * 240.00244 * 2 1 3 17 17 C 1.34779 * 120.00134 * 85.00058 * 16 2 1 18 18 O 1.21278 * 119.99829 * 359.97438 * 17 16 2 19 19 C 1.50700 * 120.00123 * 179.97438 * 17 16 2 20 20 S 1.80995 * 109.47185 * 180.02562 * 19 17 16 21 21 C 1.76200 * 100.00244 * 180.02562 * 20 19 17 22 22 H 1.08001 * 119.99623 * 0.02562 * 21 20 19 23 23 C 1.38802 * 120.00029 * 180.02562 * 21 20 19 24 24 N 1.31634 * 119.99814 * 179.97438 * 23 21 20 25 25 Si 1.86793 * 119.99981 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47409 * 90.00240 * 25 23 21 27 27 H 1.48503 * 109.47210 * 210.00092 * 25 23 21 28 28 H 1.48498 * 109.47263 * 330.00160 * 25 23 21 29 29 H 1.09001 * 109.46642 * 299.99764 * 1 2 3 30 30 H 1.08998 * 109.46901 * 59.99999 * 1 2 3 31 31 H 1.08999 * 109.47112 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47486 * 55.00077 * 4 2 1 33 33 H 1.09001 * 109.47362 * 294.99354 * 4 2 1 34 34 H 0.96995 * 120.00050 * 359.72237 * 5 4 2 35 35 H 1.07996 * 120.02618 * 359.97438 * 9 8 6 36 36 H 1.08000 * 119.97722 * 180.02562 * 14 12 10 37 37 H 0.97001 * 120.00330 * 264.99061 * 16 2 1 38 38 H 1.08995 * 109.47336 * 300.00119 * 19 17 16 39 39 H 1.09006 * 109.46803 * 60.00223 * 19 17 16 40 40 H 0.96997 * 119.99804 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5002 -0.8264 1.1905 6 6 4.1731 -1.4293 2.1905 7 8 3.5685 -1.8855 3.1417 8 6 5.6439 -1.5356 2.1311 9 6 6.3279 -2.1492 3.1613 10 7 7.6717 -2.2534 3.1092 11 1 8.1574 -2.6865 3.8285 12 6 8.3347 -1.7442 2.0497 13 8 9.5491 -1.8247 1.9886 14 6 7.6068 -1.1146 1.0085 15 7 6.3054 -1.0303 1.0791 16 7 2.0183 -0.6906 -1.1962 17 6 2.1470 -0.0182 -2.3572 18 8 1.8582 1.1584 -2.4117 19 6 2.6497 -0.7284 -3.5876 20 16 2.7112 0.4348 -4.9729 21 6 3.3140 -0.6304 -6.2404 22 1 3.5226 -1.6671 -6.0206 23 6 3.5209 -0.1372 -7.5213 24 7 3.9717 -0.9329 -8.4680 25 14 3.1595 1.6555 -7.9014 26 1 4.3785 2.4683 -7.6599 27 1 2.7503 1.7874 -9.3229 28 1 2.0622 2.1362 -7.0239 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6055 -1.7199 1.2951 33 1 1.7518 -0.1584 2.1370 34 1 3.9821 -0.4660 0.4298 35 1 5.7873 -2.5487 4.0065 36 1 8.1288 -0.7046 0.1565 37 1 2.2491 -1.6317 -1.1527 38 1 3.6490 -1.1203 -3.3981 39 1 1.9774 -1.5507 -3.8326 40 1 4.1166 -0.5882 -9.3630 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001747435459.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:23 Heat of formation + Delta-G solvation = -66.663365 kcal Electronic energy + Delta-G solvation = -25941.050114 eV Core-core repulsion = 21882.743453 eV Total energy + Delta-G solvation = -4058.306661 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.29390 -40.18798 -39.37374 -37.95615 -36.48987 -35.81878 -33.87929 -32.44158 -31.68938 -30.95756 -28.74003 -27.00728 -25.96123 -25.61738 -24.67712 -22.11634 -21.70086 -20.48018 -19.64628 -18.97395 -18.02587 -17.59706 -16.78575 -16.74885 -16.55728 -16.25495 -15.95624 -15.36361 -15.20431 -15.06029 -14.95539 -14.66160 -14.14923 -13.88578 -13.49755 -13.29937 -13.10858 -12.98659 -12.79910 -12.69839 -12.36681 -12.18713 -12.07171 -11.96895 -11.28028 -11.24068 -11.01053 -10.67272 -10.60870 -10.00154 -9.86565 -9.60551 -9.46408 -9.12508 -8.99885 -8.85536 -8.51003 -6.92292 -6.29177 -4.00986 -0.10783 0.67104 1.89008 2.34511 2.67392 2.77601 2.92360 3.18292 3.27560 3.33483 3.49963 3.54532 3.62745 3.64746 4.08751 4.32438 4.33499 4.39328 4.68662 4.72596 4.83563 5.03939 5.10039 5.20765 5.27569 5.30956 5.42216 5.52525 5.55914 5.74796 5.76029 5.83429 5.95244 6.00814 6.11023 6.47076 6.85055 7.05463 7.21387 7.52952 7.77639 7.93893 8.41497 8.43213 9.17001 10.80112 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.010371 B = 0.002715 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2699.222289 B =10311.623664 C =12525.345668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.132 3.868 3 H 0.096 0.904 4 C 0.112 3.888 5 N -0.709 5.709 6 C 0.592 3.408 7 O -0.547 6.547 8 C -0.081 4.081 9 C 0.178 3.822 10 N -0.587 5.587 11 H 0.426 0.574 12 C 0.478 3.522 13 O -0.516 6.516 14 C 0.051 3.949 15 N -0.373 5.373 16 N -0.735 5.735 17 C 0.534 3.466 18 O -0.516 6.516 19 C -0.125 4.125 20 S -0.141 6.141 21 C -0.521 4.521 22 H 0.088 0.912 23 C 0.095 3.905 24 N -0.881 5.881 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.275 1.275 28 H -0.235 1.235 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.416 0.584 35 H 0.191 0.809 36 H 0.198 0.802 37 H 0.400 0.600 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.180 -3.642 27.085 27.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.026 3.974 3 H 0.114 0.886 4 C -0.012 4.012 5 N -0.361 5.361 6 C 0.377 3.623 7 O -0.425 6.425 8 C -0.205 4.205 9 C 0.041 3.959 10 N -0.220 5.220 11 H 0.266 0.734 12 C 0.273 3.727 13 O -0.390 6.390 14 C -0.140 4.140 15 N -0.088 5.088 16 N -0.391 5.391 17 C 0.320 3.680 18 O -0.390 6.390 19 C -0.276 4.276 20 S 0.086 5.914 21 C -0.669 4.669 22 H 0.106 0.894 23 C -0.113 4.113 24 N -0.517 5.517 25 Si 0.682 3.318 26 H -0.192 1.192 27 H -0.200 1.200 28 H -0.159 1.159 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.253 0.747 35 H 0.207 0.793 36 H 0.215 0.785 37 H 0.234 0.766 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.420 -1.653 26.790 26.844 hybrid contribution 1.294 -1.672 0.235 2.128 sum 1.714 -3.325 27.025 27.282 Atomic orbital electron populations 1.22118 0.94008 1.02633 1.03246 1.21154 0.95062 0.97960 0.83184 0.88556 1.21784 0.79399 1.01836 0.98136 1.45747 1.07739 1.58756 1.23818 1.17162 0.84663 0.77933 0.82505 1.90819 1.68811 1.49334 1.33541 1.20348 0.95316 1.10483 0.94317 1.23199 0.83102 0.90512 0.99088 1.43720 1.07401 1.48083 1.22805 0.73377 1.18839 0.89231 0.81147 0.83531 1.91032 1.12601 1.57657 1.77698 1.24851 0.89140 1.00621 0.99362 1.67718 1.10024 1.09954 1.21096 1.46099 1.69405 1.14130 1.09418 1.20292 0.76776 0.87198 0.83767 1.90706 1.48251 1.15712 1.84345 1.23286 1.04525 1.03501 0.96252 1.84780 1.87202 1.16711 1.02739 1.22313 1.50412 0.98759 0.95392 0.89406 1.24717 0.93367 0.98278 0.94963 1.69940 1.43352 1.35820 1.02599 0.86734 0.81109 0.84856 0.79136 1.19189 1.19992 1.15926 0.91446 0.91034 0.92098 0.90425 0.89637 0.74659 0.79253 0.78519 0.76558 0.88419 0.88500 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.48 37.16 0.35 -1.05 16 2 C 0.13 1.22 2.73 -67.93 -0.19 1.04 16 3 H 0.10 1.06 7.58 -51.93 -0.39 0.66 16 4 C 0.11 0.86 5.23 -4.04 -0.02 0.84 16 5 N -0.71 -6.09 5.38 -61.33 -0.33 -6.42 16 6 C 0.59 5.45 7.79 -12.45 -0.10 5.35 16 7 O -0.55 -6.02 16.28 5.28 0.09 -5.94 16 8 C -0.08 -0.64 6.71 -83.11 -0.56 -1.19 16 9 C 0.18 0.86 10.77 -16.28 -0.18 0.68 16 10 N -0.59 -2.74 5.28 -14.20 -0.08 -2.82 16 11 H 0.43 0.79 8.92 -40.82 -0.36 0.42 16 12 C 0.48 3.90 7.74 -14.82 -0.11 3.78 16 13 O -0.52 -5.99 17.95 5.04 0.09 -5.90 16 14 C 0.05 0.41 11.23 -16.72 -0.19 0.22 16 15 N -0.37 -3.23 9.62 -9.34 -0.09 -3.32 16 16 N -0.74 -8.02 4.51 -53.80 -0.24 -8.27 16 17 C 0.53 8.57 7.81 -10.98 -0.09 8.49 16 18 O -0.52 -10.21 15.52 5.56 0.09 -10.13 16 19 C -0.13 -2.28 6.16 36.01 0.22 -2.06 16 20 S -0.14 -3.46 18.55 -107.50 -1.99 -5.45 16 21 C -0.52 -14.76 10.04 30.94 0.31 -14.45 16 22 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 23 C 0.10 2.76 5.50 -17.43 -0.10 2.66 16 24 N -0.88 -26.38 13.97 55.49 0.78 -25.60 16 25 Si 0.86 21.53 27.74 -169.99 -4.71 16.82 16 26 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 28 H -0.24 -5.88 6.74 56.52 0.38 -5.50 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.42 3.80 7.45 -40.82 -0.30 3.50 16 35 H 0.19 0.43 7.58 -52.49 -0.40 0.04 16 36 H 0.20 1.28 8.06 -52.49 -0.42 0.86 16 37 H 0.40 3.53 8.60 -40.82 -0.35 3.18 16 38 H 0.10 1.66 8.14 -51.92 -0.42 1.23 16 39 H 0.10 1.66 8.14 -51.91 -0.42 1.24 16 40 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 368.48 15.07 5.55 5.55 Total: -1.00 -37.55 368.48 -6.26 -43.82 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -4.77 Total: 3.33 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -0.64 Total: 4.32 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: 0.04 Total: -46.43 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: 0.26 Total: -21.96 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.71 Total: 16.82 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -1.99 Total: -5.45 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.55 -6.26 -43.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001747435459.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.848 kcal (2) G-P(sol) polarization free energy of solvation -37.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds