Wall clock time and date at job start Sat Apr 11 2020 05:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34774 * 120.00417 * 2 1 4 4 O 1.21501 * 120.00087 * 179.97438 * 3 2 1 5 5 C 1.48276 * 119.99863 * 0.02562 * 3 2 1 6 6 C 1.47488 * 128.71331 * 179.69590 * 5 3 2 7 7 N 1.30644 * 102.71988 * 179.90534 * 6 5 3 8 8 O 1.20836 * 109.61547 * 0.36997 * 7 6 5 9 9 N 1.20901 * 115.91182 * 359.73452 * 8 7 6 10 10 C 1.46501 * 119.99689 * 180.02562 * 2 1 3 11 11 C 1.53785 * 113.61390 * 59.99755 * 10 2 1 12 12 C 1.53781 * 87.08087 * 219.93230 * 11 10 2 13 13 N 1.46506 * 113.61030 * 139.98220 * 12 11 10 14 14 C 1.34777 * 119.99873 * 156.53323 * 13 12 11 15 15 O 1.21284 * 119.99754 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00137 * 179.97438 * 14 13 12 17 17 S 1.80994 * 109.47338 * 179.97438 * 16 14 13 18 18 C 1.76204 * 100.00333 * 179.97438 * 17 16 14 19 19 H 1.07998 * 119.99652 * 359.97438 * 18 17 16 20 20 C 1.38795 * 120.00282 * 180.02562 * 18 17 16 21 21 N 1.31631 * 119.99837 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00084 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47016 * 90.00052 * 22 20 18 24 24 H 1.48501 * 109.47549 * 210.00225 * 22 20 18 25 25 H 1.48505 * 109.47224 * 330.00231 * 22 20 18 26 26 C 1.53778 * 87.17216 * 25.39118 * 12 11 10 27 27 H 1.08998 * 109.46863 * 269.99806 * 1 2 3 28 28 H 1.09001 * 109.47152 * 29.99069 * 1 2 3 29 29 H 1.08998 * 109.47319 * 149.99840 * 1 2 3 30 30 H 1.08000 * 128.63754 * 0.03907 * 6 5 3 31 31 H 1.09002 * 112.84972 * 191.18878 * 10 2 1 32 32 H 1.09002 * 113.61194 * 105.38591 * 11 10 2 33 33 H 1.09002 * 113.61671 * 334.48566 * 11 10 2 34 34 H 1.09001 * 113.61709 * 270.79442 * 12 11 10 35 35 H 0.96995 * 120.00050 * 336.25437 * 13 12 11 36 36 H 1.09004 * 109.47043 * 299.99732 * 16 14 13 37 37 H 1.09000 * 109.46978 * 59.99653 * 16 14 13 38 38 H 0.97002 * 119.99546 * 180.02562 * 21 20 18 39 39 H 1.09004 * 113.61703 * 89.15791 * 26 12 11 40 40 H 1.08997 * 113.61634 * 220.05751 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3540 1.1671 0.0005 5 6 1.3976 2.4513 0.0006 6 6 1.9331 3.8255 0.0068 7 7 0.8502 4.5562 0.0022 8 8 -0.1227 3.8396 0.0023 9 7 0.0968 2.6507 0.0014 10 6 2.1974 -1.2688 -0.0006 11 6 1.8952 -2.1540 -1.2212 12 6 1.9150 -3.3527 -0.2582 13 7 0.8745 -4.3460 -0.5361 14 6 1.0338 -5.6208 -0.1286 15 8 2.0386 -5.9457 0.4677 16 6 -0.0366 -6.6424 -0.4140 17 16 0.4678 -8.2474 0.2533 18 6 -0.9257 -9.2222 -0.2079 19 1 -1.7480 -8.7699 -0.7423 20 6 -0.9669 -10.5711 0.1164 21 7 0.0347 -11.1220 0.7691 22 14 -2.4444 -11.6044 -0.3720 23 1 -2.2162 -12.1896 -1.7177 24 1 -2.6339 -12.6960 0.6169 25 1 -3.6580 -10.7490 -0.4036 26 6 1.5404 -2.3643 0.8587 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8901 -0.5137 29 1 -0.3634 -0.8899 -0.5138 30 1 2.9640 4.1475 0.0115 31 1 3.2625 -1.1428 0.1944 32 1 2.6990 -2.1720 -1.9573 33 1 0.9175 -1.9666 -1.6652 34 1 2.9025 -3.7974 -0.1347 35 1 0.0693 -4.0853 -1.0099 36 1 -0.9703 -6.3309 0.0544 37 1 -0.1809 -6.7262 -1.4912 38 1 0.0060 -12.0649 0.9954 39 1 0.4655 -2.2345 0.9846 40 1 2.0581 -2.5517 1.7994 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756748355.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:27 Heat of formation + Delta-G solvation = 85.460217 kcal Electronic energy + Delta-G solvation = -25770.464070 eV Core-core repulsion = 21718.753983 eV Total energy + Delta-G solvation = -4051.710087 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -47.48155 -41.03278 -39.56922 -38.14105 -35.85726 -35.12141 -34.75156 -32.92856 -32.45491 -29.28649 -27.71285 -27.09160 -26.12200 -25.53381 -24.79119 -23.87564 -21.21326 -20.48633 -19.66995 -19.59860 -18.73141 -18.03577 -17.81684 -17.34508 -16.42392 -16.10907 -15.85632 -15.28469 -15.26884 -14.83967 -14.82941 -14.37784 -13.83539 -13.82132 -13.56761 -13.22801 -13.14599 -12.97962 -12.78989 -12.63972 -12.08871 -12.00743 -11.83482 -11.60460 -11.48920 -11.36055 -11.13082 -11.08691 -11.05187 -10.85983 -10.77069 -9.84525 -9.46056 -9.28245 -9.09838 -8.96095 -8.27286 -6.53354 -6.24432 -3.95342 0.14119 0.76287 1.91434 2.31541 2.77794 2.91075 2.98516 3.00471 3.20282 3.25055 3.27408 3.30823 3.66999 3.92084 4.11163 4.17655 4.18142 4.20081 4.52413 4.55471 4.61353 4.77152 4.99258 5.06438 5.10892 5.23449 5.26154 5.31320 5.33318 5.50690 5.57736 5.67475 5.80875 5.84242 6.01278 6.09011 6.54705 6.59924 7.28434 7.56673 7.61928 7.83496 8.32316 8.53353 9.20956 10.82964 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.031866 B = 0.001717 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.460801 B =16305.355321 C =16951.860669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.582 5.582 3 C 0.603 3.397 4 O -0.512 6.512 5 C -0.037 4.037 6 C 0.038 3.962 7 N -0.351 5.351 8 O 0.338 5.662 9 N -0.318 5.318 10 C 0.122 3.878 11 C -0.157 4.157 12 C 0.133 3.867 13 N -0.727 5.727 14 C 0.533 3.467 15 O -0.515 6.515 16 C -0.154 4.154 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C -0.161 4.161 27 H 0.065 0.935 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.228 0.772 31 H 0.129 0.871 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.121 0.879 35 H 0.398 0.602 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.269 0.731 39 H 0.093 0.907 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.197 29.998 -3.683 30.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.313 5.313 3 C 0.387 3.613 4 O -0.386 6.386 5 C -0.202 4.202 6 C -0.148 4.148 7 N -0.073 5.073 8 O 0.113 5.887 9 N -0.040 5.040 10 C 0.019 3.981 11 C -0.196 4.196 12 C 0.026 3.974 13 N -0.381 5.381 14 C 0.320 3.680 15 O -0.389 6.389 16 C -0.305 4.305 17 S 0.167 5.833 18 C -0.685 4.685 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 C -0.201 4.201 27 H 0.084 0.916 28 H 0.113 0.887 29 H 0.099 0.901 30 H 0.244 0.756 31 H 0.147 0.853 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.138 0.862 35 H 0.233 0.767 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.111 0.889 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.492 29.648 -2.600 29.799 hybrid contribution -1.746 -0.448 -1.208 2.170 sum -0.255 29.200 -3.807 29.448 Atomic orbital electron populations 1.22264 0.78141 1.04634 1.03242 1.47637 1.07789 1.05020 1.70866 1.16593 0.86079 0.80968 0.77648 1.90857 1.11998 1.86102 1.49618 1.26236 0.89007 0.97786 1.07187 1.27763 1.01337 0.86503 0.99198 1.75103 0.95380 1.20682 1.16164 1.85113 1.30910 1.09793 1.62866 1.75498 1.16958 0.98406 1.13186 1.22661 0.98188 0.79853 0.97419 1.23847 1.03515 0.94695 0.97562 1.22101 0.94184 0.86617 0.94470 1.45930 1.22110 1.09014 1.61011 1.20368 0.87811 0.82086 0.77750 1.90707 1.29683 1.79299 1.39167 1.23540 1.00102 1.01577 1.05287 1.85412 1.28283 0.95297 1.74325 1.22862 1.05642 0.96668 1.43290 0.90922 1.24993 0.97046 0.96894 0.94645 1.70017 1.30437 1.12817 1.36959 0.86166 0.81479 0.79429 0.78409 1.20261 1.20734 1.19705 1.24008 1.02215 0.94346 0.99545 0.91605 0.88743 0.90076 0.75556 0.85279 0.89700 0.89038 0.86152 0.76742 0.89207 0.89181 0.92156 0.88882 0.89790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.34 8.50 59.85 0.51 0.85 16 2 N -0.58 -4.41 3.08 -173.85 -0.54 -4.94 16 3 C 0.60 5.34 7.70 -12.13 -0.09 5.25 16 4 O -0.51 -5.82 16.53 5.36 0.09 -5.73 16 5 C -0.04 -0.27 7.19 -80.07 -0.58 -0.85 16 6 C 0.04 0.22 12.63 -14.29 -0.18 0.04 16 7 N -0.35 -2.35 12.22 30.71 0.38 -1.97 16 8 O 0.34 2.25 11.65 27.27 0.32 2.57 16 9 N -0.32 -2.17 8.99 33.49 0.30 -1.87 16 10 C 0.12 0.96 4.20 -67.02 -0.28 0.68 16 11 C -0.16 -1.15 7.37 -25.92 -0.19 -1.34 16 12 C 0.13 1.33 4.21 -67.12 -0.28 1.05 16 13 N -0.73 -8.53 5.36 -53.02 -0.28 -8.81 16 14 C 0.53 9.31 7.85 -10.99 -0.09 9.22 16 15 O -0.51 -11.15 15.48 5.55 0.09 -11.06 16 16 C -0.15 -2.97 6.16 36.00 0.22 -2.75 16 17 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 18 C -0.54 -15.04 9.50 30.94 0.29 -14.74 16 19 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 20 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 21 N -0.87 -25.87 13.22 55.49 0.73 -25.14 16 22 Si 0.92 21.13 29.55 -169.99 -5.02 16.10 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 26 C -0.16 -1.38 7.32 -25.83 -0.19 -1.57 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.09 0.54 5.06 -51.93 -0.26 0.27 16 29 H 0.08 0.36 6.35 -51.93 -0.33 0.03 16 30 H 0.23 0.64 8.06 -52.49 -0.42 0.21 16 31 H 0.13 1.13 7.23 -51.93 -0.38 0.75 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.09 0.55 6.89 -51.93 -0.36 0.20 16 34 H 0.12 1.44 7.50 -51.93 -0.39 1.05 16 35 H 0.40 3.46 8.71 -40.82 -0.36 3.10 16 36 H 0.09 1.58 8.14 -51.91 -0.42 1.16 16 37 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 38 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.09 0.72 6.75 -51.93 -0.35 0.37 16 40 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 359.47 15.07 5.42 5.42 Total: -1.00 -35.28 359.47 -6.19 -41.47 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -4.50 Total: -0.04 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -0.95 Total: -2.19 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: 0.59 Total: -42.74 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: 0.49 Total: -14.22 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.28 -6.19 -41.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756748355.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.932 kcal (2) G-P(sol) polarization free energy of solvation -35.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds