Wall clock time and date at job start Sat Apr 11 2020 05:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34774 * 120.00417 * 2 1 4 4 O 1.21501 * 120.00087 * 179.97438 * 3 2 1 5 5 C 1.48276 * 119.99863 * 0.02562 * 3 2 1 6 6 C 1.47488 * 128.71331 * 179.69590 * 5 3 2 7 7 N 1.30644 * 102.71988 * 179.90534 * 6 5 3 8 8 O 1.20836 * 109.61547 * 0.36997 * 7 6 5 9 9 N 1.20901 * 115.91182 * 359.73452 * 8 7 6 10 10 C 1.46501 * 119.99689 * 180.02562 * 2 1 3 11 11 C 1.53785 * 113.61390 * 59.99755 * 10 2 1 12 12 C 1.53781 * 87.08087 * 219.93230 * 11 10 2 13 13 N 1.46506 * 113.61030 * 139.98220 * 12 11 10 14 14 C 1.34777 * 119.99873 * 156.53323 * 13 12 11 15 15 O 1.21284 * 119.99754 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00137 * 179.97438 * 14 13 12 17 17 S 1.80994 * 109.47338 * 179.97438 * 16 14 13 18 18 C 1.76204 * 100.00333 * 179.97438 * 17 16 14 19 19 H 1.07998 * 119.99652 * 359.97438 * 18 17 16 20 20 C 1.38795 * 120.00282 * 180.02562 * 18 17 16 21 21 N 1.31631 * 119.99837 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00084 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47016 * 90.00052 * 22 20 18 24 24 H 1.48501 * 109.47549 * 210.00225 * 22 20 18 25 25 H 1.48505 * 109.47224 * 330.00231 * 22 20 18 26 26 C 1.53778 * 87.17216 * 25.39118 * 12 11 10 27 27 H 1.08998 * 109.46863 * 269.99806 * 1 2 3 28 28 H 1.09001 * 109.47152 * 29.99069 * 1 2 3 29 29 H 1.08998 * 109.47319 * 149.99840 * 1 2 3 30 30 H 1.08000 * 128.63754 * 0.03907 * 6 5 3 31 31 H 1.09002 * 112.84972 * 191.18878 * 10 2 1 32 32 H 1.09002 * 113.61194 * 105.38591 * 11 10 2 33 33 H 1.09002 * 113.61671 * 334.48566 * 11 10 2 34 34 H 1.09001 * 113.61709 * 270.79442 * 12 11 10 35 35 H 0.96995 * 120.00050 * 336.25437 * 13 12 11 36 36 H 1.09004 * 109.47043 * 299.99732 * 16 14 13 37 37 H 1.09000 * 109.46978 * 59.99653 * 16 14 13 38 38 H 0.97002 * 119.99546 * 180.02562 * 21 20 18 39 39 H 1.09004 * 113.61703 * 89.15791 * 26 12 11 40 40 H 1.08997 * 113.61634 * 220.05751 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3540 1.1671 0.0005 5 6 1.3976 2.4513 0.0006 6 6 1.9331 3.8255 0.0068 7 7 0.8502 4.5562 0.0022 8 8 -0.1227 3.8396 0.0023 9 7 0.0968 2.6507 0.0014 10 6 2.1974 -1.2688 -0.0006 11 6 1.8952 -2.1540 -1.2212 12 6 1.9150 -3.3527 -0.2582 13 7 0.8745 -4.3460 -0.5361 14 6 1.0338 -5.6208 -0.1286 15 8 2.0386 -5.9457 0.4677 16 6 -0.0366 -6.6424 -0.4140 17 16 0.4678 -8.2474 0.2533 18 6 -0.9257 -9.2222 -0.2079 19 1 -1.7480 -8.7699 -0.7423 20 6 -0.9669 -10.5711 0.1164 21 7 0.0347 -11.1220 0.7691 22 14 -2.4444 -11.6044 -0.3720 23 1 -2.2162 -12.1896 -1.7177 24 1 -2.6339 -12.6960 0.6169 25 1 -3.6580 -10.7490 -0.4036 26 6 1.5404 -2.3643 0.8587 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8901 -0.5137 29 1 -0.3634 -0.8899 -0.5138 30 1 2.9640 4.1475 0.0115 31 1 3.2625 -1.1428 0.1944 32 1 2.6990 -2.1720 -1.9573 33 1 0.9175 -1.9666 -1.6652 34 1 2.9025 -3.7974 -0.1347 35 1 0.0693 -4.0853 -1.0099 36 1 -0.9703 -6.3309 0.0544 37 1 -0.1809 -6.7262 -1.4912 38 1 0.0060 -12.0649 0.9954 39 1 0.4655 -2.2345 0.9846 40 1 2.0581 -2.5517 1.7994 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001756748355.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:26 Heat of formation + Delta-G solvation = 59.877833 kcal Electronic energy + Delta-G solvation = -25771.573405 eV Core-core repulsion = 21718.753983 eV Total energy + Delta-G solvation = -4052.819422 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -47.98256 -41.77167 -40.62406 -39.16725 -36.51150 -35.64461 -35.43210 -34.57674 -33.99591 -30.71728 -28.24936 -27.80709 -27.57964 -26.80102 -25.37672 -24.58575 -22.12464 -21.52264 -20.44219 -20.10953 -19.72984 -19.24954 -18.65497 -18.10469 -17.76903 -16.87359 -16.81229 -16.74629 -16.37247 -16.04030 -15.92911 -15.65883 -14.95715 -14.62662 -14.43056 -14.32263 -14.06156 -13.91660 -13.62613 -13.55863 -13.24021 -13.15442 -12.88744 -12.67911 -12.51817 -12.45497 -12.36403 -12.16405 -11.94617 -11.84163 -11.71124 -11.55674 -11.13475 -10.90172 -10.25642 -10.08484 -9.87801 -8.65323 -8.33863 -6.11630 -0.41611 0.29519 1.25090 1.33675 1.43079 1.49260 1.58951 1.60865 1.68947 2.21936 2.28030 2.36112 2.45017 2.78202 3.00469 3.27786 3.34616 3.47761 3.49181 3.70374 3.77328 3.86230 3.99703 4.15174 4.33527 4.41945 4.52232 4.54026 4.57272 4.58311 4.63426 4.79249 4.93644 4.97307 5.06057 5.30025 5.42926 5.54267 5.98040 6.20689 6.53429 6.64120 7.07710 7.27240 7.33149 8.75228 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.031866 B = 0.001717 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.460801 B =16305.355321 C =16951.860669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.578 5.578 3 C 0.601 3.399 4 O -0.544 6.544 5 C -0.049 4.049 6 C 0.049 3.951 7 N -0.361 5.361 8 O 0.338 5.662 9 N -0.314 5.314 10 C 0.126 3.874 11 C -0.137 4.137 12 C 0.121 3.879 13 N -0.699 5.699 14 C 0.536 3.464 15 O -0.565 6.565 16 C -0.130 4.130 17 S -0.154 6.154 18 C -0.546 4.546 19 H 0.084 0.916 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 0.998 3.002 23 H -0.268 1.268 24 H -0.279 1.279 25 H -0.257 1.257 26 C -0.153 4.153 27 H 0.069 0.931 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.252 0.748 31 H 0.118 0.882 32 H 0.089 0.911 33 H 0.115 0.885 34 H 0.097 0.903 35 H 0.418 0.582 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.271 0.729 39 H 0.109 0.891 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.064 31.668 -5.082 32.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.309 5.309 3 C 0.387 3.613 4 O -0.420 6.420 5 C -0.214 4.214 6 C -0.137 4.137 7 N -0.085 5.085 8 O 0.114 5.886 9 N -0.035 5.035 10 C 0.022 3.978 11 C -0.176 4.176 12 C 0.015 3.985 13 N -0.352 5.352 14 C 0.322 3.678 15 O -0.443 6.443 16 C -0.281 4.281 17 S 0.073 5.927 18 C -0.693 4.693 19 H 0.102 0.898 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.820 3.180 23 H -0.194 1.194 24 H -0.204 1.204 25 H -0.181 1.181 26 C -0.193 4.193 27 H 0.088 0.912 28 H 0.114 0.886 29 H 0.117 0.883 30 H 0.268 0.732 31 H 0.136 0.864 32 H 0.107 0.893 33 H 0.133 0.867 34 H 0.116 0.884 35 H 0.256 0.744 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.080 0.920 39 H 0.127 0.873 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.827 31.366 -4.028 31.634 hybrid contribution -1.029 -0.809 -0.779 1.523 sum -1.856 30.557 -4.807 30.988 Atomic orbital electron populations 1.22424 0.76719 1.05625 1.03812 1.47686 1.08598 1.04486 1.70099 1.16761 0.85809 0.81621 0.77155 1.90841 1.13308 1.86616 1.51230 1.26097 0.89252 0.97735 1.08301 1.28198 1.02177 0.85658 0.97626 1.75119 0.95606 1.20845 1.16925 1.85111 1.31019 1.09676 1.62838 1.75486 1.16765 0.98567 1.12711 1.22483 0.97680 0.80058 0.97564 1.23766 1.04972 0.91973 0.96879 1.22218 0.92686 0.86696 0.96886 1.45631 1.23078 1.07163 1.59326 1.20090 0.86606 0.83479 0.77645 1.90700 1.31420 1.80403 1.41818 1.23384 1.01288 0.97442 1.06029 1.85607 1.30091 1.01048 1.75955 1.23211 1.05737 0.97228 1.43167 0.89807 1.26122 1.00318 0.98381 0.94378 1.70187 1.32915 1.13237 1.38453 0.84962 0.77535 0.77412 0.78124 1.19372 1.20438 1.18100 1.23956 1.03054 0.93740 0.98537 0.91244 0.88598 0.88250 0.73157 0.86435 0.89273 0.86697 0.88448 0.74389 0.87044 0.87122 0.92047 0.87317 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.48 8.50 127.77 1.09 1.56 16 2 N -0.58 -7.65 3.08 -822.23 -2.54 -10.19 16 3 C 0.60 9.91 7.70 86.91 0.67 10.58 16 4 O -0.54 -12.05 16.53 -3.72 -0.06 -12.11 16 5 C -0.05 -0.64 7.19 44.29 0.32 -0.32 16 6 C 0.05 0.48 12.63 87.31 1.10 1.58 16 7 N -0.36 -4.29 12.22 -61.46 -0.75 -5.04 16 8 O 0.34 4.00 11.65 140.86 1.64 5.64 16 9 N -0.31 -3.76 8.99 -52.06 -0.47 -4.22 16 10 C 0.13 1.79 4.20 45.58 0.19 1.98 16 11 C -0.14 -1.65 7.37 31.12 0.23 -1.42 16 12 C 0.12 2.26 4.21 45.52 0.19 2.45 16 13 N -0.70 -14.82 5.36 -440.03 -2.36 -17.18 16 14 C 0.54 18.27 7.85 87.66 0.69 18.96 16 15 O -0.57 -25.05 15.48 -3.04 -0.05 -25.10 16 16 C -0.13 -4.85 6.16 71.23 0.44 -4.41 16 17 S -0.15 -8.37 20.57 -56.49 -1.16 -9.54 16 18 C -0.55 -30.57 9.50 67.95 0.65 -29.92 16 19 H 0.08 4.33 7.80 -2.91 -0.02 4.30 16 20 C 0.01 0.71 5.49 84.86 0.47 1.18 16 21 N -0.91 -55.53 13.22 21.65 0.29 -55.24 16 22 Si 1.00 42.92 29.55 68.60 2.03 44.95 16 23 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 24 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 25 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 26 C -0.15 -2.39 7.32 31.18 0.23 -2.16 16 27 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.10 0.84 5.06 -2.39 -0.01 0.83 16 29 H 0.10 0.49 6.35 -2.39 -0.02 0.47 16 30 H 0.25 0.92 8.06 -2.91 -0.02 0.89 16 31 H 0.12 2.02 7.23 -2.39 -0.02 2.00 16 32 H 0.09 1.08 8.14 -2.39 -0.02 1.07 16 33 H 0.11 0.89 6.89 -2.39 -0.02 0.87 16 34 H 0.10 2.36 7.50 -2.39 -0.02 2.34 16 35 H 0.42 5.66 8.71 -92.71 -0.81 4.85 16 36 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 37 H 0.11 3.67 8.14 -2.40 -0.02 3.65 16 38 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 39 H 0.11 1.37 6.75 -2.39 -0.02 1.35 16 40 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -79.46 359.47 3.13 -76.33 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 0.30 Total: 11.63 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: 6.26 Total: 0.06 kcal Atomic # 7 Polarization: -86.04 SS G_CDS: -5.83 Total: -91.87 kcal Atomic # 8 Polarization: -33.10 SS G_CDS: 1.53 Total: -31.57 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.54 kcal Total: -79.46 3.13 -76.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756748355.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.207 kcal (2) G-P(sol) polarization free energy of solvation -79.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds