Wall clock time and date at job start Sat Apr 11 2020 05:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28385 * 119.10130 * 2 1 4 4 C 1.31407 * 122.26528 * 180.27244 * 3 2 1 5 5 C 1.47886 * 119.89092 * 179.74307 * 4 3 2 6 6 O 1.21557 * 119.99860 * 179.72727 * 5 4 3 7 7 N 1.34777 * 120.00211 * 359.73351 * 5 4 3 8 8 C 1.46506 * 119.99873 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47035 * 179.97438 * 8 7 5 10 10 N 1.46496 * 109.47030 * 180.02562 * 9 8 7 11 11 C 1.34777 * 119.99867 * 180.02562 * 10 9 8 12 12 O 1.21279 * 120.00166 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.00137 * 179.97438 * 11 10 9 14 14 S 1.81003 * 109.47228 * 179.97438 * 13 11 10 15 15 C 1.76206 * 99.99904 * 179.97438 * 14 13 11 16 16 H 1.07998 * 119.99972 * 359.97438 * 15 14 13 17 17 C 1.38795 * 119.99962 * 180.02562 * 15 14 13 18 18 N 1.31631 * 119.99837 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00138 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46912 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46886 * 119.99749 * 19 17 15 22 22 H 1.48499 * 109.46980 * 240.00166 * 19 17 15 23 23 C 1.41569 * 120.21284 * 359.47582 * 4 3 2 24 24 C 1.36325 * 118.24037 * 0.24969 * 23 4 3 25 25 C 1.34607 * 119.10197 * 179.74658 * 2 1 3 26 26 O 1.21987 * 120.22107 * 0.02562 * 25 2 1 27 27 H 1.09002 * 109.47241 * 270.25704 * 1 2 3 28 28 H 1.09003 * 109.47502 * 30.25701 * 1 2 3 29 29 H 1.09006 * 109.47357 * 150.25285 * 1 2 3 30 30 H 0.96999 * 120.00047 * 359.97438 * 7 5 4 31 31 H 1.09004 * 109.47073 * 299.99562 * 8 7 5 32 32 H 1.09000 * 109.47212 * 59.99645 * 8 7 5 33 33 H 1.09004 * 109.46930 * 299.99770 * 9 8 7 34 34 H 1.09004 * 109.47059 * 59.99372 * 9 8 7 35 35 H 0.96999 * 120.00085 * 359.97438 * 10 9 8 36 36 H 1.09004 * 109.47043 * 299.99732 * 13 11 10 37 37 H 1.09004 * 109.47476 * 59.99658 * 13 11 10 38 38 H 0.97002 * 119.99546 * 180.02562 * 18 17 15 39 39 H 1.08005 * 120.88334 * 180.23135 * 23 4 3 40 40 H 1.07999 * 121.03642 * 180.02562 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.0894 1.1218 0.0000 4 6 3.4014 1.1943 -0.0053 5 6 4.0665 2.5152 -0.0107 6 8 5.2801 2.5846 -0.0106 7 7 3.3271 3.6420 -0.0157 8 6 3.9861 4.9505 -0.0206 9 6 2.9271 6.0548 -0.0263 10 7 3.5860 7.3632 -0.0317 11 6 2.8466 8.4900 -0.0368 12 8 1.6358 8.4208 -0.0374 13 6 3.5243 9.8360 -0.0419 14 16 2.2715 11.1423 -0.0488 15 6 3.3122 12.5642 -0.0530 16 1 4.3858 12.4476 -0.0506 17 6 2.7520 13.8341 -0.0583 18 7 1.4434 13.9762 -0.0596 19 14 3.8553 15.3416 -0.0620 20 1 5.2774 14.9142 -0.0591 21 1 3.5844 16.1501 -1.2778 22 1 3.5810 16.1587 1.1473 23 6 4.1803 0.0121 -0.0001 24 6 3.5323 -1.1872 0.0053 25 6 2.1197 -1.1761 0.0052 26 8 1.4973 -2.2253 0.0094 27 1 -0.3634 0.0046 1.0277 28 1 -0.3634 0.8877 -0.5178 29 1 -0.3634 -0.8923 -0.5099 30 1 2.3587 3.5866 -0.0161 31 1 4.6078 5.0475 0.8695 32 1 4.6090 5.0403 -0.9105 33 1 2.3057 5.9576 -0.9166 34 1 2.3037 5.9650 0.8634 35 1 4.5544 7.4185 -0.0309 36 1 4.1460 9.9330 0.8482 37 1 4.1473 9.9258 -0.9318 38 1 1.0520 14.8638 -0.0637 39 1 5.2593 0.0592 -0.0006 40 1 4.0818 -2.1170 0.0098 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001757918895.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:31 Heat of formation + Delta-G solvation = -35.966582 kcal Electronic energy + Delta-G solvation = -24906.487480 eV Core-core repulsion = 20849.511931 eV Total energy + Delta-G solvation = -4056.975548 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.73541 -40.24598 -39.23922 -38.30741 -36.22621 -35.46873 -34.15143 -32.45697 -32.26376 -30.38658 -29.14212 -27.99258 -25.86402 -25.49438 -24.33623 -23.09754 -21.87038 -20.46772 -19.35885 -18.74452 -17.88780 -17.44172 -17.31190 -16.66626 -16.60054 -16.27048 -16.00337 -15.59037 -15.25872 -14.87797 -14.82812 -14.29884 -14.27686 -14.02500 -13.95173 -13.79658 -13.30611 -13.22585 -13.17305 -12.60084 -12.46388 -12.29431 -12.09412 -11.73027 -11.09768 -11.09022 -11.04974 -10.89562 -10.77823 -10.43651 -9.84012 -9.68659 -9.53831 -9.20665 -9.11617 -9.04195 -8.27541 -6.53714 -6.24745 -3.95600 -0.21863 0.49981 1.44698 2.19616 2.30132 2.91676 2.99474 3.02897 3.19953 3.23688 3.28319 3.34404 3.69710 3.99042 4.11174 4.16309 4.17633 4.36947 4.59743 4.62128 4.73084 4.91318 4.97649 5.00444 5.07205 5.10823 5.10854 5.23888 5.35806 5.51430 5.54930 5.65596 5.83053 5.84259 6.09508 6.43587 6.78561 6.91009 7.28832 7.53579 7.56089 7.57952 8.32694 8.49265 9.21015 10.82740 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.033746 B = 0.001506 C = 0.001444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.525461 B =18586.007508 C =19384.478852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.335 5.335 3 N -0.179 5.179 4 C 0.019 3.981 5 C 0.592 3.408 6 O -0.522 6.522 7 N -0.707 5.707 8 C 0.108 3.892 9 C 0.110 3.890 10 N -0.737 5.737 11 C 0.535 3.465 12 O -0.515 6.515 13 C -0.153 4.153 14 S -0.061 6.061 15 C -0.536 4.536 16 H 0.074 0.926 17 C 0.073 3.927 18 N -0.867 5.867 19 Si 0.919 3.081 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.032 4.032 24 C -0.188 4.188 25 C 0.479 3.521 26 O -0.522 6.522 27 H 0.087 0.913 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.412 0.588 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.401 0.599 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.268 0.732 39 H 0.166 0.834 40 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.386 -29.408 0.051 29.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.157 5.157 3 N -0.010 5.010 4 C -0.153 4.153 5 C 0.375 3.625 6 O -0.396 6.396 7 N -0.360 5.360 8 C -0.016 4.016 9 C -0.015 4.015 10 N -0.393 5.393 11 C 0.321 3.679 12 O -0.389 6.389 13 C -0.304 4.304 14 S 0.166 5.834 15 C -0.684 4.684 16 H 0.092 0.908 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.746 3.254 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.055 4.055 24 C -0.218 4.218 25 C 0.278 3.722 26 O -0.399 6.399 27 H 0.106 0.894 28 H 0.120 0.880 29 H 0.122 0.878 30 H 0.249 0.751 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.236 0.764 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.078 0.922 39 H 0.183 0.817 40 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 1.916 -29.452 0.053 29.515 hybrid contribution 2.644 0.470 0.026 2.685 sum 4.560 -28.982 0.079 29.339 Atomic orbital electron populations 1.22337 0.73059 1.06057 1.05122 1.46764 1.10096 1.02526 1.56358 1.71014 1.11178 1.12965 1.05882 1.21665 0.88198 0.96125 1.09308 1.17118 0.86260 0.82119 0.77013 1.90862 1.12558 1.86321 1.49821 1.45610 1.11195 1.05104 1.74053 1.21569 0.95499 0.80729 1.03829 1.21314 0.94836 0.81965 1.03376 1.45794 1.10301 1.04771 1.78399 1.20326 0.87551 0.85090 0.74958 1.90711 1.13884 1.86999 1.47303 1.23532 1.05441 0.96307 1.05134 1.85401 1.06948 0.94322 1.96735 1.22910 0.94599 0.91954 1.58916 0.90804 1.24995 0.95438 0.98655 0.94490 1.70027 1.09653 1.23693 1.46907 0.86108 0.80076 0.81353 0.77913 1.19595 1.20562 1.20558 1.22232 1.03194 0.90186 0.89903 1.22714 0.92575 1.00586 1.05914 1.18142 0.90197 0.83924 0.79968 1.91001 1.69223 1.29316 1.50373 0.89434 0.88032 0.87763 0.75144 0.90067 0.90068 0.90780 0.90776 0.76431 0.89033 0.89033 0.92215 0.81689 0.81165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.30 10.58 59.85 0.63 0.93 16 2 N -0.34 -2.29 3.62 -70.15 -0.25 -2.54 16 3 N -0.18 -1.19 10.11 33.41 0.34 -0.85 16 4 C 0.02 0.13 6.84 -82.83 -0.57 -0.44 16 5 C 0.59 4.80 7.81 -12.31 -0.10 4.71 16 6 O -0.52 -5.62 16.38 5.32 0.09 -5.53 16 7 N -0.71 -4.77 5.54 -61.23 -0.34 -5.11 16 8 C 0.11 0.76 5.79 -4.04 -0.02 0.74 16 9 C 0.11 1.01 5.79 -4.04 -0.02 0.99 16 10 N -0.74 -8.46 5.56 -60.29 -0.33 -8.79 16 11 C 0.53 9.21 7.85 -10.99 -0.09 9.12 16 12 O -0.52 -10.97 15.86 5.56 0.09 -10.89 16 13 C -0.15 -2.93 6.16 36.00 0.22 -2.71 16 14 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 15 C -0.54 -14.95 9.50 30.94 0.29 -14.66 16 16 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 17 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 18 N -0.87 -25.77 13.22 55.49 0.73 -25.03 16 19 Si 0.92 21.07 29.55 -169.99 -5.02 16.05 16 20 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 C -0.03 -0.18 9.67 -39.00 -0.38 -0.56 16 24 C -0.19 -1.15 10.11 -39.12 -0.40 -1.54 16 25 C 0.48 4.02 7.47 -15.18 -0.11 3.90 16 26 O -0.52 -5.87 16.62 4.93 0.08 -5.79 16 27 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.10 0.44 7.36 -51.93 -0.38 0.06 16 30 H 0.41 2.22 7.81 -40.82 -0.32 1.90 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.40 3.43 8.47 -40.82 -0.35 3.09 16 36 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 37 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 38 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.17 0.71 7.72 -52.48 -0.41 0.30 16 40 H 0.17 0.69 8.06 -52.49 -0.42 0.26 16 LS Contribution 372.07 15.07 5.61 5.61 Total: -1.00 -37.94 372.07 -6.66 -44.59 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -4.80 Total: -0.36 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -0.63 Total: 2.45 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: 0.14 Total: -42.33 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: 0.26 Total: -22.21 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.94 -6.66 -44.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001757918895.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.628 kcal (2) G-P(sol) polarization free energy of solvation -37.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds