Wall clock time and date at job start Sat Apr 11 2020 05:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28385 * 119.10130 * 2 1 4 4 C 1.31407 * 122.26528 * 180.27244 * 3 2 1 5 5 C 1.47886 * 119.89092 * 179.74307 * 4 3 2 6 6 O 1.21557 * 119.99860 * 179.72727 * 5 4 3 7 7 N 1.34777 * 120.00211 * 359.73351 * 5 4 3 8 8 C 1.46506 * 119.99873 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47035 * 179.97438 * 8 7 5 10 10 N 1.46496 * 109.47030 * 180.02562 * 9 8 7 11 11 C 1.34777 * 119.99867 * 180.02562 * 10 9 8 12 12 O 1.21279 * 120.00166 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.00137 * 179.97438 * 11 10 9 14 14 S 1.81003 * 109.47228 * 179.97438 * 13 11 10 15 15 C 1.76206 * 99.99904 * 179.97438 * 14 13 11 16 16 H 1.07998 * 119.99972 * 359.97438 * 15 14 13 17 17 C 1.38795 * 119.99962 * 180.02562 * 15 14 13 18 18 N 1.31631 * 119.99837 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00138 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46912 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46886 * 119.99749 * 19 17 15 22 22 H 1.48499 * 109.46980 * 240.00166 * 19 17 15 23 23 C 1.41569 * 120.21284 * 359.47582 * 4 3 2 24 24 C 1.36325 * 118.24037 * 0.24969 * 23 4 3 25 25 C 1.34607 * 119.10197 * 179.74658 * 2 1 3 26 26 O 1.21987 * 120.22107 * 0.02562 * 25 2 1 27 27 H 1.09002 * 109.47241 * 270.25704 * 1 2 3 28 28 H 1.09003 * 109.47502 * 30.25701 * 1 2 3 29 29 H 1.09006 * 109.47357 * 150.25285 * 1 2 3 30 30 H 0.96999 * 120.00047 * 359.97438 * 7 5 4 31 31 H 1.09004 * 109.47073 * 299.99562 * 8 7 5 32 32 H 1.09000 * 109.47212 * 59.99645 * 8 7 5 33 33 H 1.09004 * 109.46930 * 299.99770 * 9 8 7 34 34 H 1.09004 * 109.47059 * 59.99372 * 9 8 7 35 35 H 0.96999 * 120.00085 * 359.97438 * 10 9 8 36 36 H 1.09004 * 109.47043 * 299.99732 * 13 11 10 37 37 H 1.09004 * 109.47476 * 59.99658 * 13 11 10 38 38 H 0.97002 * 119.99546 * 180.02562 * 18 17 15 39 39 H 1.08005 * 120.88334 * 180.23135 * 23 4 3 40 40 H 1.07999 * 121.03642 * 180.02562 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.0894 1.1218 0.0000 4 6 3.4014 1.1943 -0.0053 5 6 4.0665 2.5152 -0.0107 6 8 5.2801 2.5846 -0.0106 7 7 3.3271 3.6420 -0.0157 8 6 3.9861 4.9505 -0.0206 9 6 2.9271 6.0548 -0.0263 10 7 3.5860 7.3632 -0.0317 11 6 2.8466 8.4900 -0.0368 12 8 1.6358 8.4208 -0.0374 13 6 3.5243 9.8360 -0.0419 14 16 2.2715 11.1423 -0.0488 15 6 3.3122 12.5642 -0.0530 16 1 4.3858 12.4476 -0.0506 17 6 2.7520 13.8341 -0.0583 18 7 1.4434 13.9762 -0.0596 19 14 3.8553 15.3416 -0.0620 20 1 5.2774 14.9142 -0.0591 21 1 3.5844 16.1501 -1.2778 22 1 3.5810 16.1587 1.1473 23 6 4.1803 0.0121 -0.0001 24 6 3.5323 -1.1872 0.0053 25 6 2.1197 -1.1761 0.0052 26 8 1.4973 -2.2253 0.0094 27 1 -0.3634 0.0046 1.0277 28 1 -0.3634 0.8877 -0.5178 29 1 -0.3634 -0.8923 -0.5099 30 1 2.3587 3.5866 -0.0161 31 1 4.6078 5.0475 0.8695 32 1 4.6090 5.0403 -0.9105 33 1 2.3057 5.9576 -0.9166 34 1 2.3037 5.9650 0.8634 35 1 4.5544 7.4185 -0.0309 36 1 4.1460 9.9330 0.8482 37 1 4.1473 9.9258 -0.9318 38 1 1.0520 14.8638 -0.0637 39 1 5.2593 0.0592 -0.0006 40 1 4.0818 -2.1170 0.0098 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001757918895.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:31 Heat of formation + Delta-G solvation = -66.845579 kcal Electronic energy + Delta-G solvation = -24907.826493 eV Core-core repulsion = 20849.511931 eV Total energy + Delta-G solvation = -4058.314562 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.28266 -40.96092 -40.48725 -38.95990 -37.05709 -35.98821 -35.12301 -34.56492 -32.87570 -31.55098 -29.80706 -28.88331 -27.63118 -26.41262 -24.86629 -23.83984 -22.53512 -21.69225 -20.02283 -19.79823 -19.21529 -17.98997 -17.97755 -17.82908 -17.32364 -17.06182 -16.88623 -16.84497 -16.65502 -16.29549 -15.67686 -15.41633 -15.25168 -14.80263 -14.67637 -14.57680 -14.43164 -14.33949 -13.80357 -13.61573 -13.52120 -13.13852 -12.92951 -12.92004 -12.80411 -12.78616 -12.57061 -11.70217 -11.57836 -11.54812 -11.14251 -11.06064 -10.96720 -10.33013 -10.24812 -10.12909 -9.77204 -8.64039 -8.33368 -6.10665 -0.72296 -0.07636 0.95332 1.26639 1.42826 1.45940 1.57187 1.58443 1.62474 1.77584 2.28650 2.35866 2.44361 2.77128 3.01243 3.34237 3.51155 3.55802 3.65172 3.71900 4.04007 4.05598 4.28357 4.33079 4.34993 4.42805 4.48594 4.52020 4.56254 4.68646 4.78217 4.85544 4.89355 4.91106 5.16512 5.40121 5.44530 6.20359 6.21931 6.32566 6.48959 6.74020 6.94069 7.08700 7.24025 8.75968 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.033746 B = 0.001506 C = 0.001444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.525461 B =18586.007508 C =19384.478852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.334 5.334 3 N -0.176 5.176 4 C 0.013 3.987 5 C 0.596 3.404 6 O -0.549 6.549 7 N -0.700 5.700 8 C 0.118 3.882 9 C 0.113 3.887 10 N -0.710 5.710 11 C 0.537 3.463 12 O -0.563 6.563 13 C -0.131 4.131 14 S -0.152 6.152 15 C -0.546 4.546 16 H 0.084 0.916 17 C 0.014 3.986 18 N -0.911 5.911 19 Si 0.998 3.002 20 H -0.256 1.256 21 H -0.275 1.275 22 H -0.275 1.275 23 C -0.024 4.024 24 C -0.189 4.189 25 C 0.468 3.532 26 O -0.560 6.560 27 H 0.098 0.902 28 H 0.120 0.880 29 H 0.100 0.900 30 H 0.420 0.580 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.420 0.580 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.271 0.729 39 H 0.182 0.818 40 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.601 -29.749 0.069 30.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.156 5.156 3 N -0.008 5.008 4 C -0.158 4.158 5 C 0.379 3.621 6 O -0.424 6.424 7 N -0.352 5.352 8 C -0.006 4.006 9 C -0.012 4.012 10 N -0.366 5.366 11 C 0.323 3.677 12 O -0.441 6.441 13 C -0.282 4.282 14 S 0.075 5.925 15 C -0.693 4.693 16 H 0.102 0.898 17 C -0.191 4.191 18 N -0.548 5.548 19 Si 0.820 3.180 20 H -0.180 1.180 21 H -0.200 1.200 22 H -0.200 1.200 23 C -0.048 4.048 24 C -0.218 4.218 25 C 0.268 3.732 26 O -0.441 6.441 27 H 0.117 0.883 28 H 0.139 0.861 29 H 0.119 0.881 30 H 0.257 0.743 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.257 0.743 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.080 0.920 39 H 0.199 0.801 40 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 4.165 -29.811 0.072 30.100 hybrid contribution 1.965 0.478 0.021 2.022 sum 6.130 -29.333 0.093 29.967 Atomic orbital electron populations 1.22572 0.71678 1.06836 1.06130 1.46950 1.11043 1.02221 1.55340 1.71039 1.11150 1.12658 1.05904 1.21658 0.88509 0.96102 1.09512 1.17165 0.85904 0.82503 0.76504 1.90853 1.13621 1.86699 1.51250 1.45550 1.11604 1.04757 1.73328 1.21439 0.94629 0.79994 1.04504 1.21390 0.95357 0.81089 1.03322 1.45473 1.11050 1.04159 1.75879 1.19987 0.86937 0.85752 0.75016 1.90703 1.15807 1.87570 1.49984 1.23382 1.03190 0.94613 1.07045 1.85560 1.11962 0.97891 1.97054 1.23253 0.94983 0.92469 1.58631 0.89833 1.26102 0.96945 1.02262 0.93799 1.70187 1.11860 1.24585 1.48152 0.84919 0.78413 0.76707 0.77999 1.18009 1.20044 1.20040 1.22369 1.03907 0.89462 0.89015 1.22873 0.91624 1.01600 1.05704 1.18528 0.91077 0.83830 0.79722 1.90979 1.70033 1.30491 1.52572 0.88348 0.86133 0.88109 0.74284 0.89416 0.89409 0.90900 0.90909 0.74284 0.87010 0.87009 0.92037 0.80051 0.79345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.48 10.58 127.77 1.35 1.84 16 2 N -0.33 -4.25 3.62 -494.04 -1.79 -6.04 16 3 N -0.18 -2.07 10.11 -48.20 -0.49 -2.56 16 4 C 0.01 0.16 6.84 42.59 0.29 0.45 16 5 C 0.60 8.50 7.81 86.80 0.68 9.18 16 6 O -0.55 -10.72 16.38 -3.89 -0.06 -10.79 16 7 N -0.70 -7.92 5.54 -465.90 -2.58 -10.50 16 8 C 0.12 1.36 5.79 86.38 0.50 1.86 16 9 C 0.11 1.82 5.79 86.38 0.50 2.32 16 10 N -0.71 -14.54 5.56 -463.06 -2.57 -17.11 16 11 C 0.54 17.84 7.85 87.66 0.69 18.53 16 12 O -0.56 -24.04 15.86 -3.03 -0.05 -24.08 16 13 C -0.13 -4.82 6.16 71.23 0.44 -4.38 16 14 S -0.15 -8.15 20.57 -56.49 -1.16 -9.31 16 15 C -0.55 -30.42 9.50 67.95 0.65 -29.77 16 16 H 0.08 4.32 7.80 -2.91 -0.02 4.29 16 17 C 0.01 0.76 5.49 84.86 0.47 1.23 16 18 N -0.91 -55.10 13.22 21.65 0.29 -54.82 16 19 Si 1.00 42.82 29.55 68.60 2.03 44.85 16 20 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 21 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 22 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 23 C -0.02 -0.24 9.67 22.65 0.22 -0.02 16 24 C -0.19 -2.08 10.11 22.57 0.23 -1.85 16 25 C 0.47 7.62 7.47 85.01 0.63 8.25 16 26 O -0.56 -12.72 16.62 -5.27 -0.09 -12.81 16 27 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.10 0.83 7.36 -2.38 -0.02 0.82 16 30 H 0.42 3.65 7.81 -92.71 -0.72 2.93 16 31 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.09 0.97 8.14 -2.39 -0.02 0.96 16 33 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.42 5.73 8.47 -92.71 -0.79 4.95 16 36 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 37 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 38 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 39 H 0.18 1.18 7.72 -2.91 -0.02 1.16 16 40 H 0.19 1.25 8.06 -2.91 -0.02 1.23 16 Total: -1.00 -84.09 372.07 -0.24 -84.33 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -0.40 Total: 11.21 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 6.64 Total: 7.63 kcal Atomic # 7 Polarization: -83.88 SS G_CDS: -7.14 Total: -91.03 kcal Atomic # 8 Polarization: -47.48 SS G_CDS: -0.20 Total: -47.68 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: -8.15 SS G_CDS: -1.16 Total: -9.31 kcal Total: -84.09 -0.24 -84.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001757918895.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.487 kcal (2) G-P(sol) polarization free energy of solvation -84.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds