Wall clock time and date at job start Sat Apr 11 2020 05:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86797 * 120.00097 * 2 1 4 4 H 1.48504 * 109.47131 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47326 * 300.00000 * 3 2 1 6 6 H 1.48497 * 109.47117 * 60.00301 * 3 2 1 7 7 C 1.38955 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99629 * 179.97438 * 7 2 1 9 9 N 1.37091 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00253 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99826 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00453 * 179.97438 * 10 9 7 13 13 N 1.46497 * 109.47162 * 180.02562 * 12 10 9 14 14 N 1.28268 * 119.45191 * 269.99878 * 13 12 10 15 15 N 1.28294 * 124.64607 * 179.97438 * 14 13 12 16 16 C 1.34214 * 121.81770 * 0.02562 * 15 14 13 17 17 C 1.40619 * 118.28657 * 359.97438 * 16 15 14 18 18 C 1.40420 * 107.32854 * 179.97438 * 17 16 15 19 19 N 1.30610 * 108.36855 * 359.97438 * 18 17 16 20 20 N 1.35906 * 135.17211 * 179.97438 * 16 15 14 21 21 C 1.40061 * 125.87086 * 359.96991 * 20 16 15 22 22 C 1.38867 * 120.06804 * 324.71862 * 21 20 16 23 23 C 1.38107 * 119.93235 * 179.76737 * 22 21 20 24 24 C 1.38288 * 120.06961 * 0.51241 * 23 22 21 25 25 C 1.38287 * 120.13537 * 359.74204 * 24 23 22 26 26 C 1.38109 * 120.07444 * 0.02562 * 25 24 23 27 27 C 1.35433 * 119.45451 * 89.95678 * 13 12 10 28 28 O 1.21844 * 121.50597 * 0.02562 * 27 13 12 29 29 H 0.97002 * 119.99936 * 359.97438 * 1 2 3 30 30 H 0.97007 * 120.00371 * 359.97438 * 9 7 2 31 31 H 1.08994 * 109.46914 * 60.00364 * 12 10 9 32 32 H 1.08996 * 109.47308 * 299.99881 * 12 10 9 33 33 H 1.07998 * 125.81634 * 180.02562 * 18 17 16 34 34 H 1.08005 * 120.03475 * 0.02562 * 22 21 20 35 35 H 1.08007 * 119.97190 * 180.25189 * 23 22 21 36 36 H 1.07999 * 119.93700 * 179.76480 * 24 23 22 37 37 H 1.08002 * 119.96345 * 180.02562 * 25 24 23 38 38 H 1.08000 * 120.03802 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3964 -1.2124 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2100 -3.5580 0.0001 12 6 1.2436 -4.8630 0.0011 13 7 2.1955 -5.9765 0.0016 14 7 2.6053 -6.4564 -1.1151 15 7 3.4359 -7.4273 -1.2308 16 6 3.9610 -8.0409 -0.1588 17 6 3.5792 -7.5936 1.1185 18 6 4.2566 -8.3863 2.0590 19 7 4.9938 -9.2504 1.4142 20 7 4.8352 -9.0633 0.0346 21 6 5.4673 -9.8042 -0.9721 22 6 4.7950 -10.0876 -2.1537 23 6 5.4226 -10.8142 -3.1464 24 6 6.7155 -11.2685 -2.9604 25 6 7.3857 -10.9924 -1.7828 26 6 6.7653 -10.2622 -0.7882 27 6 2.6289 -6.4816 1.1811 28 8 2.2449 -6.0313 2.2462 29 1 -0.4850 0.8401 0.0004 30 1 0.3532 -2.3906 0.0005 31 1 0.6167 -4.9209 -0.8886 32 1 0.6173 -4.9205 0.8913 33 1 4.1802 -8.2973 3.1326 34 1 3.7838 -9.7366 -2.2979 35 1 4.9018 -11.0315 -4.0673 36 1 7.2029 -11.8398 -3.7366 37 1 8.3955 -11.3482 -1.6407 38 1 7.2895 -10.0466 0.1312 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119381403.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:05 Heat of formation + Delta-G solvation = 101.781043 kcal Electronic energy + Delta-G solvation = -27926.576359 eV Core-core repulsion = 23772.422796 eV Total energy + Delta-G solvation = -4154.153563 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.107 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.94659 -42.13502 -40.19145 -39.88233 -39.53819 -36.44290 -35.89826 -34.90166 -33.44815 -32.33975 -31.84643 -30.83874 -30.00234 -27.30783 -26.75211 -25.50759 -24.41060 -23.53197 -22.38707 -21.65530 -20.93120 -20.23234 -19.45192 -18.85254 -18.64119 -17.72492 -17.56752 -17.06301 -16.74035 -16.58942 -16.28042 -15.97903 -15.79505 -15.63549 -15.29323 -15.06235 -14.99440 -14.48799 -14.47405 -14.29725 -13.87176 -13.59949 -13.50657 -12.93112 -12.77995 -12.63124 -12.49672 -12.24701 -12.17499 -12.15275 -12.04644 -11.71980 -11.62228 -11.35315 -10.64511 -10.13219 -10.04890 -9.99452 -9.47842 -8.54509 -6.04055 -1.31873 -0.06708 0.16961 0.30549 0.44557 0.67392 0.97629 1.31825 1.41287 1.54480 1.83274 1.88340 2.16186 2.26507 2.55316 2.78757 2.94926 2.97523 3.12167 3.39997 3.82060 3.84961 3.89707 3.95580 4.00266 4.13075 4.20067 4.28001 4.37438 4.39830 4.53083 4.64295 4.83778 4.98964 5.22483 5.29557 5.35448 5.46445 5.49929 5.85806 5.87396 5.94292 6.10279 6.44704 7.01037 7.12193 7.36897 7.91132 8.62038 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.019571 B = 0.002471 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.367748 B =11329.789494 C =11820.458611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.004 4.004 3 Si 0.992 3.008 4 H -0.277 1.277 5 H -0.266 1.266 6 H -0.270 1.270 7 C -0.337 4.337 8 H 0.077 0.923 9 N -0.549 5.549 10 C 0.423 3.577 11 O -0.634 6.634 12 C 0.102 3.898 13 N -0.351 5.351 14 N 0.125 4.875 15 N -0.250 5.250 16 C 0.262 3.738 17 C -0.324 4.324 18 C 0.143 3.857 19 N -0.254 5.254 20 N -0.285 5.285 21 C 0.102 3.898 22 C -0.121 4.121 23 C -0.099 4.099 24 C -0.104 4.104 25 C -0.102 4.102 26 C -0.115 4.115 27 C 0.540 3.460 28 O -0.516 6.516 29 H 0.282 0.718 30 H 0.404 0.596 31 H 0.172 0.828 32 H 0.149 0.851 33 H 0.241 0.759 34 H 0.129 0.871 35 H 0.162 0.838 36 H 0.166 0.834 37 H 0.163 0.837 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.677 -23.439 -5.260 24.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.205 4.205 3 Si 0.816 3.184 4 H -0.202 1.202 5 H -0.191 1.191 6 H -0.195 1.195 7 C -0.466 4.466 8 H 0.095 0.905 9 N -0.185 5.185 10 C 0.209 3.791 11 O -0.522 6.522 12 C -0.022 4.022 13 N -0.181 5.181 14 N 0.135 4.865 15 N -0.139 5.139 16 C 0.024 3.976 17 C -0.346 4.346 18 C -0.046 4.046 19 N -0.073 5.073 20 N -0.063 5.063 21 C 0.012 3.988 22 C -0.142 4.142 23 C -0.117 4.117 24 C -0.122 4.122 25 C -0.120 4.120 26 C -0.135 4.135 27 C 0.334 3.666 28 O -0.388 6.388 29 H 0.091 0.909 30 H 0.239 0.761 31 H 0.189 0.811 32 H 0.167 0.833 33 H 0.257 0.743 34 H 0.146 0.854 35 H 0.179 0.821 36 H 0.184 0.816 37 H 0.180 0.820 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 7.802 -23.859 -5.641 25.729 hybrid contribution -0.631 1.768 1.467 2.382 sum 7.172 -22.091 -4.174 23.598 Atomic orbital electron populations 1.69645 1.06662 1.29697 1.48777 1.26025 0.96578 1.02295 0.95633 0.84885 0.77896 0.77055 0.78586 1.20172 1.19100 1.19482 1.19651 0.92668 0.83633 1.50664 0.90492 1.41717 1.09685 1.04113 1.63002 1.20518 0.88184 0.86109 0.84310 1.90559 1.15858 1.87721 1.58028 1.22059 0.89392 0.80296 1.10428 1.48100 1.36946 1.28946 1.04113 1.76464 1.00906 1.00178 1.08987 1.73595 1.10494 1.06537 1.23312 1.20507 0.93573 0.91531 0.91970 1.21317 1.11789 1.06304 0.95187 1.24175 0.89855 0.88695 1.01923 1.77482 1.23068 1.22945 0.83810 1.45758 1.31929 1.23308 1.05299 1.17983 0.93760 0.99291 0.87758 1.21257 1.00804 0.99462 0.92678 1.21420 0.95674 0.95916 0.98686 1.21789 0.94258 0.98298 0.97895 1.21459 1.01377 0.96696 0.92488 1.21164 0.91657 0.99261 1.01376 1.18436 0.81448 0.82762 0.83931 1.90890 1.58004 1.61771 1.28149 0.90858 0.76079 0.81053 0.83313 0.74262 0.85352 0.82052 0.81644 0.81973 0.85038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.93 13.05 21.66 0.28 -46.65 16 2 C 0.00 -0.20 5.50 84.93 0.47 0.27 16 3 Si 0.99 42.07 29.55 68.60 2.03 44.09 16 4 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 5 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 6 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 7 C -0.34 -18.72 9.68 84.04 0.81 -17.91 16 8 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 9 N -0.55 -27.09 5.29 -306.98 -1.62 -28.71 16 10 C 0.42 19.80 7.85 87.66 0.69 20.48 16 11 O -0.63 -35.73 16.01 -3.08 -0.05 -35.78 16 12 C 0.10 3.40 6.10 85.63 0.52 3.92 16 13 N -0.35 -12.51 2.73 -470.05 -1.28 -13.79 16 14 N 0.12 4.26 12.09 37.02 0.45 4.70 16 15 N -0.25 -8.21 10.84 -55.35 -0.60 -8.81 16 16 C 0.26 8.46 7.63 133.90 1.02 9.49 16 17 C -0.32 -10.76 6.45 -20.04 -0.13 -10.89 16 18 C 0.14 3.80 12.03 85.41 1.03 4.83 16 19 N -0.25 -6.92 12.24 -56.78 -0.69 -7.61 16 20 N -0.28 -8.18 3.75 -185.28 -0.69 -8.87 16 21 C 0.10 2.45 6.40 38.13 0.24 2.69 16 22 C -0.12 -2.48 9.40 22.39 0.21 -2.27 16 23 C -0.10 -1.31 10.04 22.25 0.22 -1.09 16 24 C -0.10 -1.08 10.04 22.29 0.22 -0.85 16 25 C -0.10 -1.27 10.04 22.25 0.22 -1.05 16 26 C -0.11 -2.21 9.76 22.39 0.22 -2.00 16 27 C 0.54 20.36 7.74 86.27 0.67 21.02 16 28 O -0.52 -21.42 16.86 -4.81 -0.08 -21.50 16 29 H 0.28 13.55 8.31 -92.71 -0.77 12.78 16 30 H 0.40 18.24 7.90 -92.70 -0.73 17.50 16 31 H 0.17 4.13 8.14 -2.39 -0.02 4.11 16 32 H 0.15 4.36 7.45 -2.39 -0.02 4.34 16 33 H 0.24 4.48 8.06 -2.91 -0.02 4.46 16 34 H 0.13 2.77 7.25 -2.91 -0.02 2.75 16 35 H 0.16 1.24 8.06 -2.91 -0.02 1.22 16 36 H 0.17 0.56 8.06 -2.91 -0.02 0.54 16 37 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16 38 H 0.13 2.52 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -76.63 348.86 4.58 -72.05 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: 0.42 Total: 24.23 kcal Atomic # 6 Polarization: 20.22 SS G_CDS: 6.42 Total: 26.64 kcal Atomic # 7 Polarization: -105.57 SS G_CDS: -4.16 Total: -109.74 kcal Atomic # 8 Polarization: -57.15 SS G_CDS: -0.13 Total: -57.28 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.09 kcal Total: -76.63 4.58 -72.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119381403.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.830 kcal (2) G-P(sol) polarization free energy of solvation -76.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds