Wall clock time and date at job start Sat Apr 11 2020 05:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86793 * 119.99759 * 2 1 4 4 H 1.48494 * 109.47223 * 239.99951 * 3 2 1 5 5 H 1.48506 * 109.47168 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47406 * 119.99443 * 3 2 1 7 7 C 1.38797 * 120.00260 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00359 * 180.02562 * 7 2 1 9 9 S 1.76205 * 119.99948 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00027 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47149 * 180.02562 * 10 9 7 12 12 O 1.21295 * 119.99875 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99897 * 179.97438 * 11 10 9 14 14 C 1.40136 * 120.00066 * 185.27484 * 13 11 10 15 15 C 1.38847 * 119.99407 * 213.56544 * 14 13 11 16 16 C 1.38106 * 120.04425 * 180.25428 * 15 14 13 17 17 C 1.38813 * 120.01631 * 359.49000 * 16 15 14 18 18 N 1.40062 * 120.00988 * 180.27767 * 17 16 15 19 19 C 1.47009 * 111.00083 * 63.63122 * 18 17 16 20 20 C 1.53097 * 109.26097 * 177.60883 * 19 18 17 21 21 O 1.43018 * 109.25747 * 56.84904 * 20 19 18 22 22 C 1.43015 * 113.73753 * 301.33412 * 21 20 19 23 23 C 1.47016 * 110.99631 * 300.00153 * 18 17 16 24 24 C 1.39056 * 119.97857 * 0.25235 * 17 16 15 25 25 F 1.35103 * 120.02153 * 180.02562 * 24 17 16 26 26 C 1.38240 * 119.96431 * 0.02562 * 24 17 16 27 27 H 0.96998 * 120.00474 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47255 * 59.99556 * 10 9 7 29 29 H 1.09004 * 109.46904 * 299.99856 * 10 9 7 30 30 H 0.96999 * 120.00112 * 5.27775 * 13 11 10 31 31 H 1.08003 * 119.97378 * 359.97438 * 15 14 13 32 32 H 1.07998 * 119.99321 * 179.76235 * 16 15 14 33 33 H 1.09004 * 109.51061 * 297.54560 * 19 18 17 34 34 H 1.09002 * 109.50898 * 57.67483 * 19 18 17 35 35 H 1.09001 * 109.50674 * 296.91925 * 20 19 18 36 36 H 1.09001 * 109.51110 * 176.78477 * 20 19 18 37 37 H 1.09000 * 109.50616 * 298.73111 * 22 21 20 38 38 H 1.08997 * 109.54191 * 178.62899 * 22 21 20 39 39 H 1.09006 * 109.50578 * 302.32326 * 23 18 17 40 40 H 1.08990 * 109.51466 * 62.45636 * 23 18 17 41 41 H 1.07999 * 120.01154 * 179.97438 * 26 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5160 -3.8914 0.0005 11 6 1.9876 -5.3027 -0.0001 12 8 0.7912 -5.5023 -0.0010 13 7 2.8444 -6.3431 -0.0007 14 6 2.3570 -7.6522 -0.1129 15 6 3.0053 -8.6925 0.5393 16 6 2.5289 -9.9837 0.4253 17 6 1.3951 -10.2412 -0.3332 18 7 0.9088 -11.5499 -0.4440 19 6 0.4744 -12.0631 0.8633 20 6 -0.1036 -13.4697 0.6870 21 8 0.8785 -14.3099 0.0748 22 6 1.3237 -13.8402 -1.2006 23 6 1.9162 -12.4373 -1.0433 24 6 0.7421 -9.1992 -0.9824 25 9 -0.3617 -9.4486 -1.7204 26 6 1.2230 -7.9078 -0.8723 27 1 -0.4851 0.8400 -0.0004 28 1 3.1246 -3.7313 0.8905 29 1 3.1246 -3.7313 -0.8895 30 1 3.7984 -6.1857 0.0765 31 1 3.8853 -8.4923 1.1326 32 1 3.0360 -10.7928 0.9298 33 1 1.3275 -12.1024 1.5407 34 1 -0.2897 -11.4049 1.2771 35 1 -0.9887 -13.4227 0.0526 36 1 -0.3745 -13.8767 1.6612 37 1 0.4801 -13.8039 -1.8898 38 1 2.0849 -14.5149 -1.5922 39 1 2.2046 -12.0523 -2.0215 40 1 2.7923 -12.4826 -0.3966 41 1 0.7167 -7.0980 -1.3766 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171069245.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:24 Heat of formation + Delta-G solvation = -81.457460 kcal Electronic energy + Delta-G solvation = -26156.175085 eV Core-core repulsion = 22077.306943 eV Total energy + Delta-G solvation = -4078.868142 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.79282 -40.76008 -39.97570 -38.30116 -36.11294 -34.07235 -32.49871 -31.59657 -30.84910 -30.38246 -28.76258 -26.29906 -25.52664 -24.39954 -23.60012 -22.25888 -21.03815 -20.33495 -18.47615 -17.89170 -17.60485 -16.91841 -16.55762 -16.13112 -15.79705 -15.73692 -15.56867 -15.31749 -15.13281 -15.05929 -14.86556 -14.44896 -14.21751 -13.97436 -13.50254 -13.42384 -13.00787 -12.81354 -12.61631 -12.43679 -12.16042 -11.95562 -11.79716 -11.78189 -11.12421 -11.08882 -10.99093 -10.84029 -10.31708 -10.12657 -9.92027 -9.68095 -9.12585 -8.95895 -8.93800 -8.36005 -8.23682 -6.60141 -6.28461 -4.00803 0.83926 1.01228 2.70368 2.75328 3.19110 3.19294 3.23385 3.25285 3.40300 3.47174 3.50396 4.12503 4.16782 4.47149 4.47876 4.60743 4.73648 4.77545 4.78345 4.85442 4.90875 5.06875 5.09191 5.14715 5.25018 5.29654 5.34641 5.38164 5.50137 5.55021 5.63570 5.70370 5.76803 5.97453 5.98095 6.02044 6.27352 6.40436 6.60277 6.72567 6.99574 7.31568 7.52535 8.23828 8.27930 9.16701 10.78842 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.037710 B = 0.001942 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.337756 B =14412.452970 C =14724.886926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.920 3.080 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.073 0.927 9 S -0.056 6.056 10 C -0.154 4.154 11 C 0.531 3.469 12 O -0.491 6.491 13 N -0.681 5.681 14 C 0.193 3.807 15 C -0.153 4.153 16 C -0.098 4.098 17 C 0.020 3.980 18 N -0.493 5.493 19 C 0.022 3.978 20 C 0.064 3.936 21 O -0.386 6.386 22 C 0.064 3.936 23 C 0.022 3.978 24 C 0.152 3.848 25 F -0.124 7.124 26 C -0.158 4.158 27 H 0.270 0.730 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.413 0.587 31 H 0.133 0.867 32 H 0.130 0.870 33 H 0.049 0.951 34 H 0.090 0.910 35 H 0.062 0.938 36 H 0.101 0.899 37 H 0.062 0.938 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.049 0.951 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.636 -26.100 -0.026 27.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.686 4.686 8 H 0.092 0.908 9 S 0.171 5.829 10 C -0.305 4.305 11 C 0.319 3.681 12 O -0.362 6.362 13 N -0.327 5.327 14 C 0.097 3.903 15 C -0.174 4.174 16 C -0.118 4.118 17 C -0.075 4.075 18 N -0.215 5.215 19 C -0.105 4.105 20 C -0.013 4.013 21 O -0.304 6.304 22 C -0.013 4.013 23 C -0.105 4.105 24 C 0.131 3.869 25 F -0.103 7.103 26 C -0.179 4.179 27 H 0.080 0.920 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.250 0.750 31 H 0.151 0.849 32 H 0.148 0.852 33 H 0.067 0.933 34 H 0.108 0.892 35 H 0.081 0.919 36 H 0.119 0.881 37 H 0.080 0.920 38 H 0.118 0.882 39 H 0.107 0.893 40 H 0.067 0.933 41 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 5.068 -26.414 -0.293 26.897 hybrid contribution 2.884 1.703 0.366 3.370 sum 7.952 -24.711 0.073 25.959 Atomic orbital electron populations 1.69999 1.05965 1.27734 1.46454 1.25002 0.95053 0.99097 0.94395 0.86201 0.79230 0.81115 0.78828 1.19895 1.20763 1.19899 1.22804 0.94885 0.91470 1.59487 0.90840 1.85455 1.04296 0.96384 1.96779 1.23554 1.07119 0.94349 1.05459 1.20630 0.86507 0.86347 0.74639 1.90746 1.15177 1.85172 1.45133 1.43812 1.11209 1.03559 1.74161 1.17501 0.94288 0.84520 0.93998 1.20800 1.02940 0.91820 1.01889 1.21172 0.95714 0.96810 0.98120 1.18596 0.96609 0.89835 1.02502 1.59742 1.38500 0.99434 1.23813 1.22894 1.00901 0.97310 0.89405 1.22698 0.91113 0.88664 0.98838 1.87985 1.59305 1.49314 1.33836 1.22686 0.99469 0.93498 0.85687 1.22885 0.93250 0.93527 1.00822 1.17243 0.84789 0.91923 0.92978 1.91513 1.49862 1.94843 1.74034 1.21163 0.98945 0.96036 1.01789 0.92011 0.88710 0.88583 0.75041 0.84930 0.85186 0.93296 0.89189 0.91941 0.88117 0.91990 0.88189 0.89310 0.93320 0.82777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.63 13.22 55.49 0.73 -24.89 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 20.92 29.55 -169.99 -5.02 15.90 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.54 -14.84 9.50 30.94 0.29 -14.55 16 8 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 9 S -0.06 -1.45 20.57 -107.50 -2.21 -3.66 16 10 C -0.15 -2.87 6.16 36.01 0.22 -2.65 16 11 C 0.53 9.17 7.59 -10.98 -0.08 9.09 16 12 O -0.49 -10.40 13.55 5.54 0.08 -10.32 16 13 N -0.68 -8.48 5.35 -9.82 -0.05 -8.53 16 14 C 0.19 2.42 6.28 -83.61 -0.53 1.89 16 15 C -0.15 -1.49 9.95 -39.40 -0.39 -1.88 16 16 C -0.10 -0.92 8.62 -39.42 -0.34 -1.26 16 17 C 0.02 0.23 4.75 -83.58 -0.40 -0.17 16 18 N -0.49 -4.97 4.54 -170.67 -0.77 -5.74 16 19 C 0.02 0.19 5.41 -3.71 -0.02 0.17 16 20 C 0.06 0.49 7.01 37.21 0.26 0.75 16 21 O -0.39 -3.48 10.83 -35.23 -0.38 -3.87 16 22 C 0.06 0.47 7.01 37.21 0.26 0.73 16 23 C 0.02 0.18 5.37 -3.71 -0.02 0.16 16 24 C 0.15 2.06 7.31 -39.28 -0.29 1.77 16 25 F -0.12 -1.85 17.07 2.25 0.04 -1.81 16 26 C -0.16 -2.28 8.63 -39.35 -0.34 -2.62 16 27 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 29 H 0.10 1.62 8.14 -51.91 -0.42 1.20 16 30 H 0.41 3.58 8.82 -40.82 -0.36 3.22 16 31 H 0.13 0.95 8.06 -52.48 -0.42 0.52 16 32 H 0.13 0.97 7.04 -52.49 -0.37 0.60 16 33 H 0.05 0.40 7.41 -51.93 -0.38 0.02 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.05 0.37 7.22 -51.93 -0.37 -0.01 16 41 H 0.15 2.57 6.41 -52.49 -0.34 2.24 16 LS Contribution 361.26 15.07 5.44 5.44 Total: -1.00 -33.97 361.26 -8.79 -42.76 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -5.17 Total: 1.32 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -1.46 Total: -6.60 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: -0.09 Total: -39.17 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.31 Total: -14.19 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: -1.45 SS G_CDS: -2.21 Total: -3.66 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.97 -8.79 -42.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171069245.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.697 kcal (2) G-P(sol) polarization free energy of solvation -33.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds