Wall clock time and date at job start Sat Apr 11 2020 05:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86793 * 119.99759 * 2 1 4 4 H 1.48494 * 109.47223 * 239.99951 * 3 2 1 5 5 H 1.48506 * 109.47168 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47406 * 119.99443 * 3 2 1 7 7 C 1.38797 * 120.00260 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00359 * 180.02562 * 7 2 1 9 9 S 1.76205 * 119.99948 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00027 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47149 * 180.02562 * 10 9 7 12 12 O 1.21295 * 119.99875 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99897 * 179.97438 * 11 10 9 14 14 C 1.40136 * 120.00066 * 185.27484 * 13 11 10 15 15 C 1.38847 * 119.99407 * 213.56544 * 14 13 11 16 16 C 1.38106 * 120.04425 * 180.25428 * 15 14 13 17 17 C 1.38813 * 120.01631 * 359.49000 * 16 15 14 18 18 N 1.40062 * 120.00988 * 180.27767 * 17 16 15 19 19 C 1.47009 * 111.00083 * 63.63122 * 18 17 16 20 20 C 1.53097 * 109.26097 * 177.60883 * 19 18 17 21 21 O 1.43018 * 109.25747 * 56.84904 * 20 19 18 22 22 C 1.43015 * 113.73753 * 301.33412 * 21 20 19 23 23 C 1.47016 * 110.99631 * 300.00153 * 18 17 16 24 24 C 1.39056 * 119.97857 * 0.25235 * 17 16 15 25 25 F 1.35103 * 120.02153 * 180.02562 * 24 17 16 26 26 C 1.38240 * 119.96431 * 0.02562 * 24 17 16 27 27 H 0.96998 * 120.00474 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47255 * 59.99556 * 10 9 7 29 29 H 1.09004 * 109.46904 * 299.99856 * 10 9 7 30 30 H 0.96999 * 120.00112 * 5.27775 * 13 11 10 31 31 H 1.08003 * 119.97378 * 359.97438 * 15 14 13 32 32 H 1.07998 * 119.99321 * 179.76235 * 16 15 14 33 33 H 1.09004 * 109.51061 * 297.54560 * 19 18 17 34 34 H 1.09002 * 109.50898 * 57.67483 * 19 18 17 35 35 H 1.09001 * 109.50674 * 296.91925 * 20 19 18 36 36 H 1.09001 * 109.51110 * 176.78477 * 20 19 18 37 37 H 1.09000 * 109.50616 * 298.73111 * 22 21 20 38 38 H 1.08997 * 109.54191 * 178.62899 * 22 21 20 39 39 H 1.09006 * 109.50578 * 302.32326 * 23 18 17 40 40 H 1.08990 * 109.51466 * 62.45636 * 23 18 17 41 41 H 1.07999 * 120.01154 * 179.97438 * 26 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5160 -3.8914 0.0005 11 6 1.9876 -5.3027 -0.0001 12 8 0.7912 -5.5023 -0.0010 13 7 2.8444 -6.3431 -0.0007 14 6 2.3570 -7.6522 -0.1129 15 6 3.0053 -8.6925 0.5393 16 6 2.5289 -9.9837 0.4253 17 6 1.3951 -10.2412 -0.3332 18 7 0.9088 -11.5499 -0.4440 19 6 0.4744 -12.0631 0.8633 20 6 -0.1036 -13.4697 0.6870 21 8 0.8785 -14.3099 0.0748 22 6 1.3237 -13.8402 -1.2006 23 6 1.9162 -12.4373 -1.0433 24 6 0.7421 -9.1992 -0.9824 25 9 -0.3617 -9.4486 -1.7204 26 6 1.2230 -7.9078 -0.8723 27 1 -0.4851 0.8400 -0.0004 28 1 3.1246 -3.7313 0.8905 29 1 3.1246 -3.7313 -0.8895 30 1 3.7984 -6.1857 0.0765 31 1 3.8853 -8.4923 1.1326 32 1 3.0360 -10.7928 0.9298 33 1 1.3275 -12.1024 1.5407 34 1 -0.2897 -11.4049 1.2771 35 1 -0.9887 -13.4227 0.0526 36 1 -0.3745 -13.8767 1.6612 37 1 0.4801 -13.8039 -1.8898 38 1 2.0849 -14.5149 -1.5922 39 1 2.2046 -12.0523 -2.0215 40 1 2.7923 -12.4826 -0.3966 41 1 0.7167 -7.0980 -1.3766 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171069245.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:23 Heat of formation + Delta-G solvation = -105.524657 kcal Electronic energy + Delta-G solvation = -26157.218717 eV Core-core repulsion = 22077.306943 eV Total energy + Delta-G solvation = -4079.911774 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.87580 -41.74667 -40.91526 -39.25648 -37.01850 -35.15349 -34.59217 -32.19756 -31.81121 -31.56989 -29.82863 -27.72107 -27.05497 -25.01746 -24.54597 -23.18919 -22.08613 -21.22249 -19.98240 -19.28163 -18.42278 -18.21877 -17.32466 -17.18369 -16.90507 -16.87193 -16.65702 -16.47179 -16.23391 -16.00407 -15.93097 -15.86582 -15.23869 -15.02833 -14.85081 -14.56575 -14.29353 -13.90649 -13.54351 -13.43291 -13.25992 -13.18758 -12.87604 -12.84230 -12.65243 -12.56443 -12.37183 -11.78049 -11.60930 -11.40118 -11.13413 -11.06811 -10.75888 -10.30681 -9.93658 -9.64134 -9.21578 -8.68874 -8.35612 -6.14291 -0.11241 0.08934 1.20972 1.41757 1.43924 1.44258 1.54198 2.02538 2.25922 2.46252 2.49955 2.91909 2.98935 3.15594 3.30832 3.64504 3.81762 3.87507 3.92389 4.03899 4.12210 4.13032 4.21533 4.24531 4.25897 4.42541 4.48216 4.52153 4.58773 4.69695 4.77806 4.86482 4.92527 4.95435 5.05793 5.15299 5.25376 5.41303 5.63147 5.75087 6.13364 6.16077 6.18732 6.27371 7.01207 7.05915 8.73178 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.037710 B = 0.001942 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.337756 B =14412.452970 C =14724.886926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 0.999 3.001 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.087 0.913 9 S -0.151 6.151 10 C -0.128 4.128 11 C 0.535 3.465 12 O -0.539 6.539 13 N -0.655 5.655 14 C 0.174 3.826 15 C -0.128 4.128 16 C -0.088 4.088 17 C 0.032 3.968 18 N -0.512 5.512 19 C 0.022 3.978 20 C 0.065 3.935 21 O -0.398 6.398 22 C 0.063 3.937 23 C 0.023 3.977 24 C 0.124 3.876 25 F -0.142 7.142 26 C -0.177 4.177 27 H 0.271 0.729 28 H 0.120 0.880 29 H 0.118 0.882 30 H 0.435 0.565 31 H 0.172 0.828 32 H 0.163 0.837 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.055 0.945 36 H 0.120 0.880 37 H 0.055 0.945 38 H 0.123 0.877 39 H 0.089 0.911 40 H 0.062 0.938 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.301 -27.585 1.123 29.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.206 1.206 6 H -0.185 1.185 7 C -0.693 4.693 8 H 0.105 0.895 9 S 0.076 5.924 10 C -0.279 4.279 11 C 0.322 3.678 12 O -0.415 6.415 13 N -0.303 5.303 14 C 0.079 3.921 15 C -0.149 4.149 16 C -0.108 4.108 17 C -0.064 4.064 18 N -0.235 5.235 19 C -0.104 4.104 20 C -0.012 4.012 21 O -0.317 6.317 22 C -0.014 4.014 23 C -0.103 4.103 24 C 0.103 3.897 25 F -0.120 7.120 26 C -0.199 4.199 27 H 0.080 0.920 28 H 0.138 0.862 29 H 0.136 0.864 30 H 0.275 0.725 31 H 0.190 0.810 32 H 0.181 0.819 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.074 0.926 36 H 0.138 0.862 37 H 0.073 0.927 38 H 0.141 0.859 39 H 0.107 0.893 40 H 0.080 0.920 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 8.790 -27.944 0.853 29.306 hybrid contribution 1.776 1.949 -0.005 2.637 sum 10.566 -25.995 0.848 28.073 Atomic orbital electron populations 1.70177 1.08009 1.28695 1.47939 1.26141 0.95954 1.03403 0.93760 0.84999 0.77776 0.75656 0.79553 1.18636 1.20648 1.18513 1.23172 0.95452 0.91773 1.58929 0.89532 1.85668 1.10263 0.99374 1.97107 1.23363 1.03875 0.93001 1.07682 1.20365 0.86185 0.86801 0.74415 1.90749 1.17320 1.85705 1.47691 1.43369 1.11651 1.02631 1.72650 1.17625 0.94499 0.84898 0.95093 1.21155 1.02936 0.90686 1.00076 1.21514 0.94657 0.97626 0.97012 1.18722 0.96466 0.89847 1.01351 1.59702 1.39631 0.99276 1.24892 1.22920 1.01115 0.97526 0.88835 1.22766 0.90590 0.88169 0.99669 1.87971 1.59500 1.49787 1.34426 1.22804 0.99871 0.93616 0.85097 1.22943 0.93129 0.93310 1.00935 1.17496 0.85204 0.92575 0.94449 1.91457 1.50910 1.94932 1.74734 1.21009 1.00146 0.95598 1.03101 0.92021 0.86151 0.86398 0.72478 0.81034 0.81947 0.92141 0.90044 0.92632 0.86172 0.92652 0.85930 0.89287 0.92020 0.86252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.44 13.22 21.65 0.29 -55.15 16 2 C 0.01 0.68 5.49 84.86 0.47 1.15 16 3 Si 1.00 42.70 29.55 68.60 2.03 44.72 16 4 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 5 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 7 C -0.55 -30.20 9.50 67.95 0.65 -29.56 16 8 H 0.09 4.38 7.80 -2.91 -0.02 4.36 16 9 S -0.15 -8.12 20.57 -56.49 -1.16 -9.28 16 10 C -0.13 -4.66 6.16 71.24 0.44 -4.22 16 11 C 0.53 18.39 7.59 87.66 0.67 19.06 16 12 O -0.54 -23.93 13.55 -3.08 -0.04 -23.97 16 13 N -0.65 -15.12 5.35 -303.36 -1.62 -16.74 16 14 C 0.17 4.12 6.28 38.11 0.24 4.36 16 15 C -0.13 -1.99 9.95 22.38 0.22 -1.77 16 16 C -0.09 -1.34 8.62 22.38 0.19 -1.14 16 17 C 0.03 0.67 4.75 38.16 0.18 0.85 16 18 N -0.51 -9.61 4.54 -693.87 -3.15 -12.76 16 19 C 0.02 0.35 5.41 86.31 0.47 0.82 16 20 C 0.06 0.89 7.01 72.01 0.50 1.40 16 21 O -0.40 -6.34 10.83 -148.98 -1.61 -7.95 16 22 C 0.06 0.80 7.01 72.02 0.50 1.30 16 23 C 0.02 0.32 5.37 86.31 0.46 0.78 16 24 C 0.12 3.46 7.31 22.47 0.16 3.63 16 25 F -0.14 -4.52 17.07 44.97 0.77 -3.76 16 26 C -0.18 -5.32 8.63 22.42 0.19 -5.12 16 27 H 0.27 15.37 8.31 -92.71 -0.77 14.59 16 28 H 0.12 3.78 8.14 -2.40 -0.02 3.76 16 29 H 0.12 3.78 8.14 -2.39 -0.02 3.76 16 30 H 0.43 6.02 8.82 -92.71 -0.82 5.20 16 31 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 32 H 0.16 1.52 7.04 -2.91 -0.02 1.50 16 33 H 0.06 0.80 7.41 -2.39 -0.02 0.78 16 34 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 40 H 0.06 0.70 7.22 -2.39 -0.02 0.68 16 41 H 0.12 4.40 6.41 -2.91 -0.02 4.39 16 Total: -1.00 -78.67 361.26 1.10 -77.57 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 0.26 Total: 15.79 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: 5.35 Total: -8.48 kcal Atomic # 7 Polarization: -80.16 SS G_CDS: -4.48 Total: -84.64 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -1.65 Total: -31.92 kcal Atomic # 9 Polarization: -4.52 SS G_CDS: 0.77 Total: -3.76 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Atomic # 16 Polarization: -8.12 SS G_CDS: -1.16 Total: -9.28 kcal Total: -78.67 1.10 -77.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171069245.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.953 kcal (2) G-P(sol) polarization free energy of solvation -78.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds