Wall clock time and date at job start Sat Apr 11 2020 05:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86796 * 120.00410 * 2 1 4 4 H 1.48501 * 109.47016 * 240.00512 * 3 2 1 5 5 H 1.48504 * 109.46642 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47356 * 120.00033 * 3 2 1 7 7 C 1.38810 * 119.99762 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99756 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00006 * 359.97438 * 7 2 1 10 10 C 1.80997 * 99.99811 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47373 * 179.97438 * 10 9 7 12 12 O 1.21291 * 119.99640 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00268 * 180.02562 * 11 10 9 14 14 C 1.46502 * 120.00110 * 180.02562 * 13 11 10 15 15 C 1.52993 * 109.47452 * 179.97438 * 14 13 11 16 16 C 1.53001 * 109.47427 * 180.02562 * 15 14 13 17 17 C 1.50693 * 109.47132 * 179.97438 * 16 15 14 18 18 N 1.28675 * 124.92996 * 90.00089 * 17 16 15 19 19 C 1.32521 * 117.87673 * 179.97438 * 18 17 16 20 20 C 1.34609 * 113.16070 * 0.02562 * 19 18 17 21 21 S 1.70917 * 124.92929 * 269.99399 * 17 16 15 22 22 C 1.51002 * 125.22764 * 179.97438 * 20 19 18 23 23 C 1.53279 * 108.58010 * 343.93286 * 22 20 19 24 24 C 1.53145 * 108.99147 * 49.27844 * 23 22 20 25 25 C 1.52136 * 124.20151 * 180.02562 * 19 18 17 26 26 H 0.96991 * 119.99732 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.47514 * 60.00073 * 10 9 7 28 28 H 1.09002 * 109.47271 * 299.99856 * 10 9 7 29 29 H 0.96999 * 120.00270 * 359.97438 * 13 11 10 30 30 H 1.09010 * 109.47370 * 59.99159 * 14 13 11 31 31 H 1.09002 * 109.46769 * 299.99762 * 14 13 11 32 32 H 1.08997 * 109.47070 * 59.99702 * 15 14 13 33 33 H 1.09002 * 109.47151 * 299.99787 * 15 14 13 34 34 H 1.08997 * 109.47269 * 59.99787 * 16 15 14 35 35 H 1.09002 * 109.46750 * 299.99995 * 16 15 14 36 36 H 1.08998 * 109.61958 * 103.66826 * 22 20 19 37 37 H 1.09004 * 109.61689 * 224.20694 * 22 20 19 38 38 H 1.09003 * 109.54876 * 169.13341 * 23 22 20 39 39 H 1.09000 * 109.54923 * 289.32496 * 23 22 20 40 40 H 1.09001 * 109.47443 * 49.60638 * 24 23 22 41 41 H 1.09000 * 109.47204 * 169.62138 * 24 23 22 42 42 H 1.09004 * 109.58967 * 42.70040 * 25 19 18 43 43 H 1.08997 * 109.71810 * 282.32301 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8915 -0.0005 11 6 1.9873 -5.3028 0.0001 12 8 0.7909 -5.5024 0.0010 13 7 2.8440 -6.3432 0.0007 14 6 2.3303 -7.7152 0.0008 15 6 3.5022 -8.6986 0.0009 16 6 2.9657 -10.1315 0.0003 17 6 4.1201 -11.1001 -0.0002 18 7 4.6845 -11.5742 1.0545 19 6 5.6917 -12.4199 0.8913 20 6 5.9777 -12.6593 -0.4021 21 16 4.8695 -11.7287 -1.4018 22 6 7.0707 -13.5761 -0.8971 23 6 8.0330 -13.8592 0.2618 24 6 7.2222 -14.2768 1.4921 25 6 6.4598 -13.0657 2.0347 26 1 -0.4849 0.8400 0.0004 27 1 3.1244 -3.7315 0.8895 28 1 3.1244 -3.7314 -0.8905 29 1 3.8008 -6.1836 0.0004 30 1 1.7219 -7.8754 -0.8894 31 1 1.7213 -7.8750 0.8906 32 1 4.1108 -8.5385 0.8909 33 1 4.1109 -8.5387 -0.8891 34 1 2.3574 -10.2913 -0.8899 35 1 2.3568 -10.2918 0.8901 36 1 6.6334 -14.5114 -1.2467 37 1 7.6110 -13.0946 -1.7122 38 1 8.7132 -14.6640 -0.0171 39 1 8.6055 -12.9598 0.4885 40 1 6.5142 -15.0571 1.2130 41 1 7.8965 -14.6556 2.2602 42 1 5.7620 -13.3896 2.8069 43 1 7.1641 -12.3484 2.4560 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171346490.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:27 Heat of formation + Delta-G solvation = -26.653543 kcal Electronic energy + Delta-G solvation = -22804.770679 eV Core-core repulsion = 19294.492189 eV Total energy + Delta-G solvation = -3510.278490 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.55185 -39.16536 -37.23217 -35.67395 -33.18534 -32.41537 -31.38448 -30.21954 -28.96229 -26.70032 -25.45177 -24.35558 -23.41671 -22.13301 -21.29957 -20.25934 -18.87994 -18.32924 -17.81703 -16.25486 -16.11104 -15.95435 -15.62487 -15.21116 -14.80231 -14.79001 -14.54375 -14.49082 -14.35513 -13.86763 -13.66014 -13.23455 -13.01791 -12.89154 -12.73558 -12.51104 -12.33604 -12.02224 -11.84995 -11.71591 -11.42759 -11.37355 -11.11042 -11.03287 -11.02605 -10.95583 -10.75857 -9.87448 -9.81094 -9.54086 -9.40191 -9.05148 -8.88574 -8.87416 -8.22593 -6.48612 -6.20251 -3.90812 0.35291 0.98098 1.41122 2.40370 3.04708 3.11836 3.24489 3.28402 3.31919 3.55118 3.76535 4.20909 4.21844 4.28735 4.32204 4.46078 4.60931 4.65042 4.81107 4.85300 4.96527 5.01365 5.05743 5.14733 5.20169 5.23465 5.25226 5.32640 5.35445 5.44937 5.47825 5.55524 5.65610 5.67808 5.74786 5.83466 5.89950 5.92994 5.97247 6.15648 6.62327 7.44046 7.60531 7.71960 8.36325 8.62897 9.24851 10.87157 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.027448 B = 0.001525 C = 0.001496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.869528 B =18359.850142 C =18717.920748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.531 3.469 12 O -0.518 6.518 13 N -0.740 5.740 14 C 0.122 3.878 15 C -0.124 4.124 16 C -0.041 4.041 17 C 0.060 3.940 18 N -0.471 5.471 19 C 0.067 3.933 20 C -0.230 4.230 21 S 0.114 5.886 22 C -0.041 4.041 23 C -0.116 4.116 24 C -0.120 4.120 25 C -0.040 4.040 26 H 0.269 0.731 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.398 0.602 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.041 -31.445 -1.025 35.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.392 6.392 13 N -0.394 5.394 14 C -0.002 4.002 15 C -0.163 4.163 16 C -0.082 4.082 17 C -0.219 4.219 18 N -0.185 5.185 19 C -0.064 4.064 20 C -0.351 4.351 21 S 0.372 5.628 22 C -0.080 4.080 23 C -0.155 4.155 24 C -0.158 4.158 25 C -0.080 4.080 26 H 0.079 0.921 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.232 0.768 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.109 0.891 35 H 0.118 0.882 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.102 0.898 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 14.451 -31.353 -1.618 34.561 hybrid contribution 2.837 1.032 0.645 3.087 sum 17.288 -30.321 -0.973 34.917 Atomic orbital electron populations 1.70006 1.05948 1.27556 1.46771 1.24990 0.95025 0.99003 0.94529 0.86225 0.79237 0.81252 0.78787 1.19950 1.20801 1.19953 1.22837 0.94888 0.91696 1.59073 0.90977 1.85389 1.04944 0.96284 1.96722 1.23535 1.06566 0.95403 1.04929 1.20309 0.86520 0.86288 0.75132 1.90705 1.15358 1.85629 1.47506 1.45978 1.09972 1.05475 1.78007 1.21224 0.95612 0.80647 1.02708 1.21770 0.98458 0.92509 1.03579 1.20196 0.92312 0.90673 1.05052 1.26738 1.02285 1.02292 0.90593 1.65830 1.09377 1.11199 1.32062 1.20886 0.94770 0.97051 0.93703 1.26017 1.05467 1.07662 0.95955 1.83960 1.27069 1.39238 1.12534 1.20172 0.92662 0.96902 0.98304 1.21619 0.97350 1.02062 0.94518 1.21584 0.99074 0.97322 0.97803 1.20366 0.97501 0.96356 0.93756 0.92132 0.89218 0.89222 0.76820 0.91388 0.91278 0.90478 0.90974 0.89080 0.88166 0.90120 0.90302 0.90749 0.91264 0.91435 0.90666 0.89837 0.89942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.29 13.22 55.49 0.73 -25.55 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.54 -15.39 9.50 30.94 0.29 -15.10 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.15 -3.13 6.16 36.01 0.22 -2.90 16 11 C 0.53 10.01 7.85 -10.99 -0.09 9.92 16 12 O -0.52 -11.87 15.86 5.55 0.09 -11.78 16 13 N -0.74 -9.87 5.56 -60.29 -0.33 -10.21 16 14 C 0.12 1.37 5.67 -4.04 -0.02 1.35 16 15 C -0.12 -1.03 5.31 -26.73 -0.14 -1.17 16 16 C -0.04 -0.32 5.80 -27.89 -0.16 -0.48 16 17 C 0.06 0.56 6.64 -13.60 -0.09 0.47 16 18 N -0.47 -5.14 10.51 -7.32 -0.08 -5.22 16 19 C 0.07 0.63 6.78 -82.87 -0.56 0.07 16 20 C -0.23 -1.88 6.39 -35.44 -0.23 -2.10 16 21 S 0.11 0.92 23.17 -107.50 -2.49 -1.57 16 22 C -0.04 -0.22 6.28 -27.59 -0.17 -0.39 16 23 C -0.12 -0.51 5.95 -26.51 -0.16 -0.66 16 24 C -0.12 -0.56 5.87 -26.63 -0.16 -0.71 16 25 C -0.04 -0.27 6.29 -27.15 -0.17 -0.44 16 26 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 27 H 0.09 1.69 8.14 -51.91 -0.42 1.26 16 28 H 0.09 1.68 8.14 -51.91 -0.42 1.25 16 29 H 0.40 4.16 8.47 -40.82 -0.35 3.81 16 30 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.07 0.33 8.11 -51.93 -0.42 -0.09 16 40 H 0.07 0.33 8.10 -51.93 -0.42 -0.10 16 41 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 384.52 15.07 5.79 5.79 Total: -1.00 -35.79 384.52 -11.70 -47.49 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -6.65 Total: -1.42 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -1.53 Total: -10.15 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.32 Total: -40.98 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.09 Total: -11.78 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -0.72 SS G_CDS: -4.70 Total: -5.43 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.79 -11.70 -47.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171346490.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.837 kcal (2) G-P(sol) polarization free energy of solvation -35.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds