Wall clock time and date at job start Sat Apr 11 2020 05:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86796 * 120.00410 * 2 1 4 4 H 1.48501 * 109.47016 * 240.00512 * 3 2 1 5 5 H 1.48504 * 109.46642 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47356 * 120.00033 * 3 2 1 7 7 C 1.38810 * 119.99762 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99756 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00006 * 359.97438 * 7 2 1 10 10 C 1.80997 * 99.99811 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47373 * 179.97438 * 10 9 7 12 12 O 1.21291 * 119.99640 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00268 * 180.02562 * 11 10 9 14 14 C 1.46502 * 120.00110 * 180.02562 * 13 11 10 15 15 C 1.52993 * 109.47452 * 179.97438 * 14 13 11 16 16 C 1.53001 * 109.47427 * 180.02562 * 15 14 13 17 17 C 1.50693 * 109.47132 * 179.97438 * 16 15 14 18 18 N 1.28675 * 124.92996 * 90.00089 * 17 16 15 19 19 C 1.32521 * 117.87673 * 179.97438 * 18 17 16 20 20 C 1.34609 * 113.16070 * 0.02562 * 19 18 17 21 21 S 1.70917 * 124.92929 * 269.99399 * 17 16 15 22 22 C 1.51002 * 125.22764 * 179.97438 * 20 19 18 23 23 C 1.53279 * 108.58010 * 343.93286 * 22 20 19 24 24 C 1.53145 * 108.99147 * 49.27844 * 23 22 20 25 25 C 1.52136 * 124.20151 * 180.02562 * 19 18 17 26 26 H 0.96991 * 119.99732 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.47514 * 60.00073 * 10 9 7 28 28 H 1.09002 * 109.47271 * 299.99856 * 10 9 7 29 29 H 0.96999 * 120.00270 * 359.97438 * 13 11 10 30 30 H 1.09010 * 109.47370 * 59.99159 * 14 13 11 31 31 H 1.09002 * 109.46769 * 299.99762 * 14 13 11 32 32 H 1.08997 * 109.47070 * 59.99702 * 15 14 13 33 33 H 1.09002 * 109.47151 * 299.99787 * 15 14 13 34 34 H 1.08997 * 109.47269 * 59.99787 * 16 15 14 35 35 H 1.09002 * 109.46750 * 299.99995 * 16 15 14 36 36 H 1.08998 * 109.61958 * 103.66826 * 22 20 19 37 37 H 1.09004 * 109.61689 * 224.20694 * 22 20 19 38 38 H 1.09003 * 109.54876 * 169.13341 * 23 22 20 39 39 H 1.09000 * 109.54923 * 289.32496 * 23 22 20 40 40 H 1.09001 * 109.47443 * 49.60638 * 24 23 22 41 41 H 1.09000 * 109.47204 * 169.62138 * 24 23 22 42 42 H 1.09004 * 109.58967 * 42.70040 * 25 19 18 43 43 H 1.08997 * 109.71810 * 282.32301 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8915 -0.0005 11 6 1.9873 -5.3028 0.0001 12 8 0.7909 -5.5024 0.0010 13 7 2.8440 -6.3432 0.0007 14 6 2.3303 -7.7152 0.0008 15 6 3.5022 -8.6986 0.0009 16 6 2.9657 -10.1315 0.0003 17 6 4.1201 -11.1001 -0.0002 18 7 4.6845 -11.5742 1.0545 19 6 5.6917 -12.4199 0.8913 20 6 5.9777 -12.6593 -0.4021 21 16 4.8695 -11.7287 -1.4018 22 6 7.0707 -13.5761 -0.8971 23 6 8.0330 -13.8592 0.2618 24 6 7.2222 -14.2768 1.4921 25 6 6.4598 -13.0657 2.0347 26 1 -0.4849 0.8400 0.0004 27 1 3.1244 -3.7315 0.8895 28 1 3.1244 -3.7314 -0.8905 29 1 3.8008 -6.1836 0.0004 30 1 1.7219 -7.8754 -0.8894 31 1 1.7213 -7.8750 0.8906 32 1 4.1108 -8.5385 0.8909 33 1 4.1109 -8.5387 -0.8891 34 1 2.3574 -10.2913 -0.8899 35 1 2.3568 -10.2918 0.8901 36 1 6.6334 -14.5114 -1.2467 37 1 7.6110 -13.0946 -1.7122 38 1 8.7132 -14.6640 -0.0171 39 1 8.6055 -12.9598 0.4885 40 1 6.5142 -15.0571 1.2130 41 1 7.8965 -14.6556 2.2602 42 1 5.7620 -13.3896 2.8069 43 1 7.1641 -12.3484 2.4560 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171346490.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:26 Heat of formation + Delta-G solvation = -49.755315 kcal Electronic energy + Delta-G solvation = -22805.772447 eV Core-core repulsion = 19294.492189 eV Total energy + Delta-G solvation = -3511.280258 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.16477 -40.59790 -37.81425 -36.64174 -34.58377 -34.20603 -31.83815 -31.39063 -29.94908 -27.80775 -27.39374 -24.91488 -24.04446 -22.85207 -22.02782 -21.51532 -19.81703 -19.45634 -18.91427 -17.77181 -17.29488 -16.91585 -16.87370 -16.33858 -15.97134 -15.83295 -15.69229 -15.23956 -15.06049 -14.78937 -14.66316 -14.38637 -14.26884 -13.85528 -13.64947 -13.38762 -13.17211 -13.16675 -12.86292 -12.85581 -12.69806 -12.56093 -12.48178 -11.97420 -11.79667 -11.74211 -11.67454 -11.40500 -11.12564 -10.98671 -10.53116 -10.27938 -10.16865 -10.11770 -9.50253 -8.66518 -8.34102 -6.12428 -0.28475 0.37200 0.77266 1.27170 1.44283 1.47058 1.56845 1.61299 1.74222 2.26604 2.30769 2.98629 2.99883 3.32617 3.66718 3.77826 3.93098 3.94698 3.95474 4.00218 4.13290 4.19745 4.25202 4.30157 4.43043 4.51369 4.55016 4.58249 4.59622 4.65144 4.80344 4.82338 4.96352 5.03238 5.09027 5.12633 5.14919 5.20497 5.37291 5.40124 5.41897 5.44104 6.19991 6.50015 6.79618 7.06939 7.24110 8.74911 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.027448 B = 0.001525 C = 0.001496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.869528 B =18359.850142 C =18717.920748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.999 3.001 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.549 4.549 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.130 4.130 11 C 0.533 3.467 12 O -0.566 6.566 13 N -0.714 5.714 14 C 0.122 3.878 15 C -0.107 4.107 16 C -0.039 4.039 17 C 0.044 3.956 18 N -0.501 5.501 19 C 0.042 3.958 20 C -0.231 4.231 21 S 0.131 5.869 22 C -0.043 4.043 23 C -0.114 4.114 24 C -0.116 4.116 25 C -0.041 4.041 26 H 0.271 0.729 27 H 0.109 0.891 28 H 0.111 0.889 29 H 0.416 0.584 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.091 0.909 42 H 0.077 0.923 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.012 -32.331 -1.618 38.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.697 4.697 8 H 0.101 0.899 9 S 0.076 5.924 10 C -0.282 4.282 11 C 0.319 3.681 12 O -0.444 6.444 13 N -0.368 5.368 14 C -0.002 4.002 15 C -0.147 4.147 16 C -0.081 4.081 17 C -0.234 4.234 18 N -0.215 5.215 19 C -0.089 4.089 20 C -0.352 4.352 21 S 0.389 5.611 22 C -0.083 4.083 23 C -0.153 4.153 24 C -0.153 4.153 25 C -0.081 4.081 26 H 0.080 0.920 27 H 0.127 0.873 28 H 0.129 0.871 29 H 0.253 0.747 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.125 0.875 35 H 0.114 0.886 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.113 0.887 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.110 0.890 42 H 0.096 0.904 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 17.479 -32.279 -2.210 36.774 hybrid contribution 1.965 1.144 0.818 2.417 sum 19.444 -31.135 -1.392 36.735 Atomic orbital electron populations 1.70175 1.07974 1.28682 1.47888 1.26131 0.95966 1.03310 0.93694 0.85003 0.77806 0.75692 0.79484 1.18624 1.20360 1.18715 1.23187 0.95375 0.92039 1.59055 0.89891 1.85567 1.10587 0.99227 1.97062 1.23382 1.03562 0.94390 1.06826 1.20062 0.86233 0.86702 0.75136 1.90694 1.17396 1.86133 1.50213 1.45742 1.10342 1.05226 1.75509 1.21353 0.96774 0.79682 1.02344 1.21609 0.97117 0.91879 1.04052 1.20204 0.92120 0.90034 1.05703 1.26898 1.02714 1.02782 0.91040 1.65853 1.10316 1.12136 1.33195 1.21298 0.95086 0.97524 0.94969 1.26446 1.05647 1.07397 0.95703 1.83825 1.26690 1.38879 1.11684 1.20340 0.92186 0.96788 0.98983 1.21631 0.97209 1.02591 0.93838 1.21579 0.99111 0.96188 0.98450 1.20457 0.97376 0.97136 0.93139 0.91980 0.87280 0.87097 0.74712 0.91410 0.92123 0.90741 0.89693 0.87534 0.88559 0.89079 0.89402 0.88720 0.91698 0.91601 0.89026 0.90425 0.89922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.23 13.22 21.65 0.29 -55.95 16 2 C 0.01 0.79 5.49 84.86 0.47 1.26 16 3 Si 1.00 43.69 29.55 68.60 2.03 45.72 16 4 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 5 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 7 C -0.55 -31.52 9.50 67.96 0.65 -30.88 16 8 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 9 S -0.15 -8.48 20.57 -56.49 -1.16 -9.65 16 10 C -0.13 -5.18 6.16 71.24 0.44 -4.75 16 11 C 0.53 19.73 7.85 87.66 0.69 20.42 16 12 O -0.57 -26.39 15.86 -3.06 -0.05 -26.44 16 13 N -0.71 -17.82 5.56 -463.05 -2.57 -20.39 16 14 C 0.12 2.58 5.67 86.38 0.49 3.07 16 15 C -0.11 -1.61 5.31 30.59 0.16 -1.44 16 16 C -0.04 -0.58 5.80 29.85 0.17 -0.41 16 17 C 0.04 0.79 6.64 88.57 0.59 1.38 16 18 N -0.50 -10.77 10.51 -177.08 -1.86 -12.63 16 19 C 0.04 0.76 6.78 42.08 0.29 1.04 16 20 C -0.23 -3.47 6.39 24.95 0.16 -3.31 16 21 S 0.13 1.94 23.17 -56.49 -1.31 0.63 16 22 C -0.04 -0.38 6.28 30.04 0.19 -0.19 16 23 C -0.11 -0.73 5.95 30.74 0.18 -0.55 16 24 C -0.12 -0.88 5.87 30.66 0.18 -0.70 16 25 C -0.04 -0.54 6.29 30.32 0.19 -0.34 16 26 H 0.27 15.56 8.31 -92.72 -0.77 14.79 16 27 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 28 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 29 H 0.42 7.54 8.47 -92.71 -0.79 6.75 16 30 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 38 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 39 H 0.06 0.49 8.11 -2.39 -0.02 0.47 16 40 H 0.07 0.53 8.10 -2.39 -0.02 0.51 16 41 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 42 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -79.66 384.52 0.43 -79.23 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 0.23 Total: 14.88 kcal Atomic # 6 Polarization: -20.24 SS G_CDS: 4.84 Total: -15.40 kcal Atomic # 7 Polarization: -84.82 SS G_CDS: -4.15 Total: -88.97 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -0.05 Total: -26.44 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: -6.55 SS G_CDS: -2.47 Total: -9.02 kcal Total: -79.66 0.43 -79.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171346490.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.475 kcal (2) G-P(sol) polarization free energy of solvation -79.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds