Wall clock time and date at job start Sat Apr 11 2020 05:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38190 * 120.01208 * 2 1 4 4 C 1.38250 * 120.02196 * 179.97438 * 3 2 1 5 5 S 1.76208 * 119.97028 * 180.02562 * 4 3 2 6 6 O 1.42097 * 106.40185 * 336.45819 * 5 4 3 7 7 O 1.42097 * 106.40036 * 203.53689 * 5 4 3 8 8 N 1.65602 * 107.21383 * 90.00040 * 5 4 3 9 9 C 1.46506 * 120.00006 * 90.00215 * 8 5 4 10 10 C 1.50703 * 109.47289 * 94.99495 * 9 8 5 11 11 H 1.07994 * 119.99399 * 0.02562 * 10 9 8 12 12 C 1.37874 * 119.99789 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99734 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 120.00111 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47123 * 89.99915 * 14 12 10 16 16 H 1.48498 * 109.47161 * 209.99603 * 14 12 10 17 17 H 1.48497 * 109.47329 * 329.99749 * 14 12 10 18 18 C 1.46495 * 120.00241 * 269.99567 * 8 5 4 19 19 C 1.52998 * 109.47247 * 265.00554 * 18 8 5 20 20 C 1.47206 * 109.47064 * 179.97438 * 19 18 8 21 21 N 7.76435 * 96.31958 * 26.56231 * 2 1 3 22 22 C 1.38242 * 120.05619 * 0.29045 * 4 3 2 23 23 C 1.38205 * 120.02168 * 359.45387 * 22 4 3 24 24 C 1.50696 * 120.01143 * 180.25213 * 23 22 4 25 25 C 1.38461 * 119.97351 * 0.52420 * 23 22 4 26 26 F 1.35102 * 120.02562 * 179.72384 * 25 23 22 27 27 H 1.09008 * 109.47160 * 90.00569 * 1 2 3 28 28 H 1.09001 * 109.47423 * 210.00324 * 1 2 3 29 29 H 1.09000 * 109.47522 * 330.00394 * 1 2 3 30 30 H 1.08000 * 119.99192 * 0.02562 * 3 2 1 31 31 H 1.09001 * 109.47060 * 214.99945 * 9 8 5 32 32 H 1.09004 * 109.47073 * 334.99434 * 9 8 5 33 33 H 0.97007 * 120.00011 * 180.02562 * 13 12 10 34 34 H 1.09002 * 109.46665 * 25.00141 * 18 8 5 35 35 H 1.08998 * 109.47564 * 145.00383 * 18 8 5 36 36 H 1.09003 * 109.47072 * 299.99950 * 19 18 8 37 37 H 1.09004 * 109.47465 * 59.99972 * 19 18 8 38 38 H 1.08000 * 119.99165 * 179.70596 * 22 4 3 39 39 H 1.09005 * 109.47489 * 270.26997 * 24 23 22 40 40 H 1.09002 * 109.47233 * 30.27427 * 24 23 22 41 41 H 1.09006 * 109.46891 * 150.27642 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1966 0.0000 4 6 3.5807 1.1969 0.0005 5 16 4.4607 2.7235 0.0012 6 8 3.5786 3.6953 -0.5434 7 8 5.7440 2.4471 -0.5427 8 7 4.7048 3.1477 1.5832 9 6 5.9120 2.7018 2.2833 10 6 6.9636 3.7787 2.2073 11 1 6.7534 4.7029 1.6898 12 6 8.1934 3.5843 2.7995 13 7 9.1111 4.5238 2.7328 14 14 8.5565 1.9858 3.6953 15 1 9.1375 1.0057 2.7430 16 1 9.5231 2.2422 4.7931 17 1 7.2976 1.4389 4.2620 18 6 3.7137 3.9690 2.2827 19 6 4.1249 5.4407 2.2055 20 6 3.1286 6.2660 2.9078 21 7 2.3616 6.9026 3.4509 22 6 4.2733 0.0005 -0.0050 23 6 3.5841 -1.1975 0.0003 24 6 4.3394 -2.5015 0.0001 25 6 2.1995 -1.1990 0.0003 26 9 1.5248 -2.3695 -0.0002 27 1 -0.3634 -0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6582 2.1320 0.0004 31 1 5.6730 2.5003 3.3275 32 1 6.2887 1.7924 1.8149 33 1 9.9766 4.3870 3.1491 34 1 2.7383 3.8392 1.8139 35 1 3.6588 3.6615 3.3270 36 1 5.1003 5.5705 2.6742 37 1 4.1797 5.7483 1.1612 38 1 5.3533 0.0019 -0.0094 39 1 4.5215 -2.8158 -1.0277 40 1 5.2916 -2.3701 0.5140 41 1 3.7512 -3.2621 0.5136 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173160124.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:30 Heat of formation + Delta-G solvation = -70.603714 kcal Electronic energy + Delta-G solvation = -27691.655741 eV Core-core repulsion = 23613.258253 eV Total energy + Delta-G solvation = -4078.397489 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.30298 -39.47455 -37.23251 -36.85337 -35.76203 -35.42281 -34.02951 -32.67327 -32.01208 -30.83119 -27.76621 -27.68643 -27.09371 -23.60448 -23.01489 -22.01588 -21.55902 -18.54963 -17.89149 -17.66984 -17.20889 -17.14486 -16.59923 -16.55176 -16.11882 -15.61116 -14.56763 -14.40160 -14.33568 -14.08811 -13.78802 -13.73536 -13.59104 -13.47424 -13.42117 -13.30777 -12.76179 -12.64831 -12.54309 -12.45992 -12.33454 -12.07926 -12.04499 -11.81423 -11.68197 -11.46718 -11.39780 -11.30458 -11.10931 -10.77706 -10.60926 -10.45609 -10.29516 -9.59272 -9.15616 -9.00940 -8.68789 -8.43087 -6.18212 -4.19065 0.40347 0.76729 0.90885 2.91891 3.03872 3.09762 3.20551 3.25023 3.28927 3.44290 3.85228 4.07614 4.22332 4.29421 4.35425 4.39743 4.64791 4.89889 4.96414 5.00224 5.04062 5.09089 5.15624 5.28344 5.35693 5.37441 5.45710 5.58154 5.63534 5.71601 5.77892 5.83368 5.84671 5.90463 5.94025 6.19854 6.39481 6.54700 6.58194 6.85958 7.09743 7.44390 7.84099 8.35516 8.84288 9.40376 10.94272 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.009844 B = 0.004817 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2843.771986 B = 5811.089532 C = 7615.870460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.139 4.139 3 C -0.002 4.002 4 C -0.679 4.679 5 S 2.687 3.313 6 O -0.964 6.964 7 O -0.931 6.931 8 N -0.976 5.976 9 C 0.222 3.778 10 C -0.537 4.537 11 H 0.085 0.915 12 C 0.078 3.922 13 N -0.890 5.890 14 Si 0.866 3.134 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.264 1.264 18 C 0.143 3.857 19 C -0.058 4.058 20 C 0.225 3.775 21 N -0.459 5.459 22 C 0.003 3.997 23 C -0.136 4.136 24 C -0.116 4.116 25 C 0.141 3.859 26 F -0.131 7.131 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.149 0.851 31 H 0.039 0.961 32 H 0.033 0.967 33 H 0.266 0.734 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.139 0.861 37 H 0.112 0.888 38 H 0.153 0.847 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.257 -12.183 -4.285 18.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.141 4.141 3 C -0.021 4.021 4 C -0.762 4.762 5 S 2.774 3.226 6 O -0.954 6.954 7 O -0.921 6.921 8 N -0.814 5.814 9 C 0.099 3.901 10 C -0.576 4.576 11 H 0.103 0.897 12 C -0.125 4.125 13 N -0.527 5.527 14 Si 0.692 3.308 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.188 1.188 18 C 0.015 3.985 19 C -0.100 4.100 20 C -0.093 4.093 21 N -0.137 5.137 22 C -0.016 4.016 23 C -0.138 4.138 24 C -0.172 4.172 25 C 0.122 3.878 26 F -0.110 7.110 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.166 0.834 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.105 0.895 36 H 0.157 0.843 37 H 0.130 0.870 38 H 0.170 0.830 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.978 -10.826 -4.132 18.157 hybrid contribution 0.293 -1.892 0.578 2.000 sum -13.685 -12.718 -3.554 19.018 Atomic orbital electron populations 1.20745 0.89530 1.03662 1.03102 1.20005 0.97345 0.91803 1.04899 1.20690 0.91877 0.98057 0.91507 1.31568 1.06291 1.21814 1.16559 1.02357 0.73574 0.73503 0.73156 1.93541 1.67746 1.57388 1.76723 1.93632 1.37620 1.85019 1.75870 1.57297 1.29998 1.62719 1.31367 1.19617 0.81388 0.96080 0.93005 1.21345 0.96815 1.03116 1.36353 0.89669 1.24823 0.95878 0.96202 0.95635 1.69873 1.05493 1.33259 1.44079 0.87021 0.78975 0.84648 0.80114 1.19768 1.21000 1.18850 1.20914 0.90162 0.88155 0.99261 1.20073 0.96232 0.92344 1.01369 1.29249 0.93540 0.93572 0.92938 1.81117 1.11509 1.10272 1.10787 1.20796 1.00801 0.89544 0.90466 1.20048 0.91837 0.97396 1.04524 1.20769 1.00363 0.92902 1.03189 1.17590 0.89568 0.80921 0.99745 1.91479 1.80240 1.45967 1.93269 0.90571 0.91093 0.90453 0.83363 0.94268 0.94920 0.92380 0.90546 0.89487 0.84297 0.86972 0.82983 0.90482 0.90228 0.91077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 9.84 36.00 0.35 -0.58 16 2 C -0.14 -1.54 5.89 -104.56 -0.62 -2.16 16 3 C 0.00 -0.03 9.17 -39.59 -0.36 -0.39 16 4 C -0.68 -9.32 5.97 -39.58 -0.24 -9.56 16 5 S 2.69 44.17 5.60 -107.50 -0.60 43.57 16 6 O -0.96 -16.25 16.25 -57.17 -0.93 -17.18 16 7 O -0.93 -18.70 16.24 -57.17 -0.93 -19.63 16 8 N -0.98 -15.92 2.80 -115.66 -0.32 -16.25 16 9 C 0.22 4.34 4.19 -5.19 -0.02 4.32 16 10 C -0.54 -13.02 8.97 -34.44 -0.31 -13.33 16 11 H 0.09 2.19 7.13 -52.49 -0.37 1.82 16 12 C 0.08 2.03 5.47 -17.82 -0.10 1.93 16 13 N -0.89 -24.97 13.96 55.43 0.77 -24.20 16 14 Si 0.87 19.07 27.47 -169.99 -4.67 14.41 16 15 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.26 -5.33 6.54 56.52 0.37 -4.96 16 18 C 0.14 1.92 5.32 -4.05 -0.02 1.89 16 19 C -0.06 -0.83 5.62 -29.52 -0.17 -1.00 16 20 C 0.22 3.34 15.43 -20.79 -0.32 3.02 16 21 N -0.46 -7.74 18.53 42.12 0.78 -6.96 16 22 C 0.00 0.04 9.18 -39.59 -0.36 -0.32 16 23 C -0.14 -1.61 5.89 -104.55 -0.62 -2.23 16 24 C -0.12 -1.08 9.83 36.00 0.35 -0.72 16 25 C 0.14 1.66 7.18 -39.41 -0.28 1.37 16 26 F -0.13 -1.47 15.69 2.25 0.04 -1.44 16 27 H 0.08 0.56 8.14 -51.92 -0.42 0.13 16 28 H 0.07 0.55 7.64 -51.93 -0.40 0.15 16 29 H 0.08 0.53 8.09 -51.93 -0.42 0.11 16 30 H 0.15 1.50 7.62 -52.49 -0.40 1.10 16 31 H 0.04 0.72 7.06 -51.93 -0.37 0.36 16 32 H 0.03 0.64 7.04 -51.93 -0.37 0.27 16 33 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.08 0.83 7.61 -51.93 -0.40 0.44 16 35 H 0.09 1.03 8.00 -51.93 -0.42 0.61 16 36 H 0.14 2.19 6.59 -51.93 -0.34 1.85 16 37 H 0.11 1.56 8.14 -51.93 -0.42 1.14 16 38 H 0.15 1.94 7.61 -52.49 -0.40 1.54 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.68 8.09 -51.93 -0.42 0.26 16 41 H 0.07 0.61 7.64 -51.93 -0.40 0.21 16 LS Contribution 368.09 15.07 5.55 5.55 Total: -1.00 -31.30 368.09 -8.15 -39.45 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -5.13 Total: 0.43 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: -2.71 Total: -17.74 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: 1.23 Total: -47.41 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: -1.86 Total: -36.81 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -4.67 Total: 14.41 kcal Atomic # 16 Polarization: 44.17 SS G_CDS: -0.60 Total: 43.57 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.30 -8.15 -39.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173160124.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.156 kcal (2) G-P(sol) polarization free energy of solvation -31.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds