Wall clock time and date at job start Sat Apr 11 2020 05:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38190 * 120.01208 * 2 1 4 4 C 1.38250 * 120.02196 * 179.97438 * 3 2 1 5 5 S 1.76208 * 119.97028 * 180.02562 * 4 3 2 6 6 O 1.42097 * 106.40185 * 336.45819 * 5 4 3 7 7 O 1.42097 * 106.40036 * 203.53689 * 5 4 3 8 8 N 1.65602 * 107.21383 * 90.00040 * 5 4 3 9 9 C 1.46506 * 120.00006 * 90.00215 * 8 5 4 10 10 C 1.50703 * 109.47289 * 94.99495 * 9 8 5 11 11 H 1.07994 * 119.99399 * 0.02562 * 10 9 8 12 12 C 1.37874 * 119.99789 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99734 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 120.00111 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47123 * 89.99915 * 14 12 10 16 16 H 1.48498 * 109.47161 * 209.99603 * 14 12 10 17 17 H 1.48497 * 109.47329 * 329.99749 * 14 12 10 18 18 C 1.46495 * 120.00241 * 269.99567 * 8 5 4 19 19 C 1.52998 * 109.47247 * 265.00554 * 18 8 5 20 20 C 1.47206 * 109.47064 * 179.97438 * 19 18 8 21 21 N 7.76435 * 96.31958 * 26.56231 * 2 1 3 22 22 C 1.38242 * 120.05619 * 0.29045 * 4 3 2 23 23 C 1.38205 * 120.02168 * 359.45387 * 22 4 3 24 24 C 1.50696 * 120.01143 * 180.25213 * 23 22 4 25 25 C 1.38461 * 119.97351 * 0.52420 * 23 22 4 26 26 F 1.35102 * 120.02562 * 179.72384 * 25 23 22 27 27 H 1.09008 * 109.47160 * 90.00569 * 1 2 3 28 28 H 1.09001 * 109.47423 * 210.00324 * 1 2 3 29 29 H 1.09000 * 109.47522 * 330.00394 * 1 2 3 30 30 H 1.08000 * 119.99192 * 0.02562 * 3 2 1 31 31 H 1.09001 * 109.47060 * 214.99945 * 9 8 5 32 32 H 1.09004 * 109.47073 * 334.99434 * 9 8 5 33 33 H 0.97007 * 120.00011 * 180.02562 * 13 12 10 34 34 H 1.09002 * 109.46665 * 25.00141 * 18 8 5 35 35 H 1.08998 * 109.47564 * 145.00383 * 18 8 5 36 36 H 1.09003 * 109.47072 * 299.99950 * 19 18 8 37 37 H 1.09004 * 109.47465 * 59.99972 * 19 18 8 38 38 H 1.08000 * 119.99165 * 179.70596 * 22 4 3 39 39 H 1.09005 * 109.47489 * 270.26997 * 24 23 22 40 40 H 1.09002 * 109.47233 * 30.27427 * 24 23 22 41 41 H 1.09006 * 109.46891 * 150.27642 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1966 0.0000 4 6 3.5807 1.1969 0.0005 5 16 4.4607 2.7235 0.0012 6 8 3.5786 3.6953 -0.5434 7 8 5.7440 2.4471 -0.5427 8 7 4.7048 3.1477 1.5832 9 6 5.9120 2.7018 2.2833 10 6 6.9636 3.7787 2.2073 11 1 6.7534 4.7029 1.6898 12 6 8.1934 3.5843 2.7995 13 7 9.1111 4.5238 2.7328 14 14 8.5565 1.9858 3.6953 15 1 9.1375 1.0057 2.7430 16 1 9.5231 2.2422 4.7931 17 1 7.2976 1.4389 4.2620 18 6 3.7137 3.9690 2.2827 19 6 4.1249 5.4407 2.2055 20 6 3.1286 6.2660 2.9078 21 7 2.3616 6.9026 3.4509 22 6 4.2733 0.0005 -0.0050 23 6 3.5841 -1.1975 0.0003 24 6 4.3394 -2.5015 0.0001 25 6 2.1995 -1.1990 0.0003 26 9 1.5248 -2.3695 -0.0002 27 1 -0.3634 -0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6582 2.1320 0.0004 31 1 5.6730 2.5003 3.3275 32 1 6.2887 1.7924 1.8149 33 1 9.9766 4.3870 3.1491 34 1 2.7383 3.8392 1.8139 35 1 3.6588 3.6615 3.3270 36 1 5.1003 5.5705 2.6742 37 1 4.1797 5.7483 1.1612 38 1 5.3533 0.0019 -0.0094 39 1 4.5215 -2.8158 -1.0277 40 1 5.2916 -2.3701 0.5140 41 1 3.7512 -3.2621 0.5136 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173160124.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:29 Heat of formation + Delta-G solvation = -89.806350 kcal Electronic energy + Delta-G solvation = -27692.488430 eV Core-core repulsion = 23613.258253 eV Total energy + Delta-G solvation = -4079.230177 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.17269 -40.37937 -38.51517 -38.22493 -37.10145 -36.81097 -34.83416 -34.51193 -32.91649 -32.20365 -29.36016 -28.47844 -27.91856 -24.94840 -24.06047 -23.54104 -22.38666 -19.80479 -19.25374 -18.74243 -18.50554 -18.10383 -18.08066 -17.80985 -16.98826 -16.95798 -16.08935 -15.80019 -15.41802 -15.16911 -14.77039 -14.61772 -14.58678 -14.51076 -14.32352 -14.22766 -14.13316 -14.01186 -13.92594 -13.48411 -13.30313 -13.18911 -13.07729 -13.00427 -12.92985 -12.89136 -12.85372 -12.64992 -12.21058 -12.15827 -11.96540 -11.83042 -11.67301 -11.38637 -10.63930 -10.09038 -9.87419 -9.84091 -8.14506 -6.17772 -0.68527 -0.39112 0.01809 1.47647 1.48992 1.56133 1.76293 1.85992 1.93425 2.29180 2.46504 2.82825 2.98021 3.13023 3.20674 3.26179 3.56839 3.58878 3.91003 4.02909 4.08668 4.18179 4.22895 4.37276 4.51202 4.58366 4.61487 4.68348 4.73032 4.80809 4.87254 4.96634 5.02664 5.06789 5.07506 5.09649 5.18799 5.18976 5.39582 5.60395 5.67962 5.74288 6.42689 6.61540 6.88218 7.44921 9.01197 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.009844 B = 0.004817 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2843.771986 B = 5811.089532 C = 7615.870460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.135 4.135 3 C -0.007 4.007 4 C -0.678 4.678 5 S 2.694 3.306 6 O -0.973 6.973 7 O -0.978 6.978 8 N -0.977 5.977 9 C 0.224 3.776 10 C -0.529 4.529 11 H 0.055 0.945 12 C 0.015 3.985 13 N -0.946 5.946 14 Si 0.922 3.078 15 H -0.273 1.273 16 H -0.292 1.292 17 H -0.226 1.226 18 C 0.133 3.867 19 C -0.053 4.053 20 C 0.249 3.751 21 N -0.488 5.488 22 C -0.014 4.014 23 C -0.137 4.137 24 C -0.118 4.118 25 C 0.136 3.864 26 F -0.127 7.127 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.167 0.833 31 H 0.063 0.937 32 H 0.039 0.961 33 H 0.263 0.737 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.121 0.879 37 H 0.113 0.887 38 H 0.150 0.850 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.814 -14.619 -3.735 21.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.137 4.137 3 C -0.026 4.026 4 C -0.766 4.766 5 S 2.786 3.214 6 O -0.964 6.964 7 O -0.968 6.968 8 N -0.814 5.814 9 C 0.100 3.900 10 C -0.569 4.569 11 H 0.073 0.927 12 C -0.183 4.183 13 N -0.587 5.587 14 Si 0.746 3.254 15 H -0.198 1.198 16 H -0.218 1.218 17 H -0.149 1.149 18 C 0.006 3.994 19 C -0.095 4.095 20 C -0.069 4.069 21 N -0.167 5.167 22 C -0.033 4.033 23 C -0.139 4.139 24 C -0.174 4.174 25 C 0.116 3.884 26 F -0.106 7.106 27 H 0.106 0.894 28 H 0.095 0.905 29 H 0.112 0.888 30 H 0.185 0.815 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.139 0.861 37 H 0.131 0.869 38 H 0.167 0.833 39 H 0.106 0.894 40 H 0.104 0.896 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.559 -13.231 -3.584 21.497 hybrid contribution 0.980 -1.136 0.302 1.530 sum -15.579 -14.367 -3.281 21.445 Atomic orbital electron populations 1.20865 0.87351 1.04816 1.04177 1.20314 0.98910 0.91097 1.03335 1.20934 0.91108 0.99327 0.91201 1.31004 1.06886 1.19981 1.18743 1.01728 0.72845 0.73996 0.72787 1.93519 1.67494 1.58468 1.76886 1.93576 1.40401 1.85904 1.76927 1.57129 1.29709 1.63496 1.31073 1.19452 0.81392 0.94504 0.94651 1.21734 0.97829 1.03203 1.34099 0.92686 1.25691 0.95965 0.99561 0.97095 1.70043 1.06155 1.35916 1.46556 0.86100 0.80123 0.80519 0.78690 1.19807 1.21814 1.14874 1.21260 0.90592 0.86719 1.00819 1.20011 0.95120 0.93334 1.01045 1.29154 0.92834 0.92792 0.92073 1.81146 1.12585 1.11178 1.11772 1.20873 1.00929 0.89996 0.91548 1.20264 0.92212 0.97814 1.03595 1.20866 1.00565 0.91888 1.04128 1.17752 0.89688 0.81361 0.99588 1.91491 1.80105 1.45785 1.93181 0.89430 0.90520 0.88806 0.81545 0.91882 0.94320 0.92800 0.87465 0.87244 0.86130 0.86923 0.83253 0.89428 0.89569 0.90178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.48 9.84 71.23 0.70 -0.78 16 2 C -0.13 -2.57 5.89 -19.82 -0.12 -2.68 16 3 C -0.01 -0.14 9.17 22.26 0.20 0.07 16 4 C -0.68 -17.41 5.97 22.27 0.13 -17.28 16 5 S 2.69 86.47 5.60 -56.49 -0.32 86.15 16 6 O -0.97 -31.79 16.25 -128.00 -2.08 -33.87 16 7 O -0.98 -39.83 16.24 -128.00 -2.08 -41.91 16 8 N -0.98 -30.46 2.80 -519.83 -1.45 -31.92 16 9 C 0.22 8.43 4.19 85.63 0.36 8.79 16 10 C -0.53 -25.94 8.97 25.60 0.23 -25.71 16 11 H 0.05 2.95 7.13 -2.91 -0.02 2.93 16 12 C 0.01 0.78 5.47 84.65 0.46 1.25 16 13 N -0.95 -55.14 13.96 21.45 0.30 -54.84 16 14 Si 0.92 38.72 27.47 68.60 1.88 40.61 16 15 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 16 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 17 H -0.23 -8.04 6.54 99.48 0.65 -7.39 16 18 C 0.13 3.26 5.32 86.38 0.46 3.72 16 19 C -0.05 -1.47 5.62 28.79 0.16 -1.31 16 20 C 0.25 7.12 15.43 89.45 1.38 8.50 16 21 N -0.49 -15.96 18.53 20.00 0.37 -15.59 16 22 C -0.01 -0.35 9.18 22.26 0.20 -0.15 16 23 C -0.14 -2.94 5.89 -19.82 -0.12 -3.05 16 24 C -0.12 -1.92 9.83 71.23 0.70 -1.21 16 25 C 0.14 2.81 7.18 22.38 0.16 2.97 16 26 F -0.13 -2.48 15.69 44.97 0.71 -1.78 16 27 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 28 H 0.08 0.91 7.64 -2.39 -0.02 0.90 16 29 H 0.09 0.91 8.09 -2.39 -0.02 0.89 16 30 H 0.17 2.81 7.62 -2.91 -0.02 2.78 16 31 H 0.06 2.12 7.06 -2.39 -0.02 2.10 16 32 H 0.04 1.44 7.04 -2.38 -0.02 1.43 16 33 H 0.26 14.56 8.31 -92.70 -0.77 13.79 16 34 H 0.11 2.00 7.61 -2.39 -0.02 1.98 16 35 H 0.11 2.23 8.00 -2.39 -0.02 2.21 16 36 H 0.12 3.87 6.59 -2.39 -0.02 3.85 16 37 H 0.11 3.12 8.14 -2.38 -0.02 3.10 16 38 H 0.15 3.71 7.61 -2.91 -0.02 3.69 16 39 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 40 H 0.09 1.28 8.09 -2.39 -0.02 1.26 16 41 H 0.08 1.15 7.64 -2.38 -0.02 1.13 16 Total: -1.00 -69.00 368.09 3.26 -65.74 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 1.01 Total: 14.29 kcal Atomic # 6 Polarization: -31.81 SS G_CDS: 4.92 Total: -26.88 kcal Atomic # 7 Polarization: -101.56 SS G_CDS: -0.78 Total: -102.35 kcal Atomic # 8 Polarization: -71.62 SS G_CDS: -4.16 Total: -75.78 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.71 Total: -1.78 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 1.88 Total: 40.61 kcal Atomic # 16 Polarization: 86.47 SS G_CDS: -0.32 Total: 86.15 kcal Total: -69.00 3.26 -65.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173160124.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.068 kcal (2) G-P(sol) polarization free energy of solvation -69.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds