Wall clock time and date at job start Sat Apr 11 2020 05:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86809 * 119.99701 * 2 1 4 4 H 1.48504 * 109.46931 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46750 * 299.99495 * 3 2 1 6 6 H 1.48498 * 109.47076 * 59.99575 * 3 2 1 7 7 C 1.38804 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99994 * 162.55095 * 7 2 1 9 9 N 1.36933 * 120.00274 * 342.82344 * 7 2 1 10 10 C 1.46964 * 120.59941 * 151.29483 * 9 7 2 11 11 C 1.53807 * 108.39953 * 124.75704 * 10 9 7 12 12 N 1.46965 * 108.57986 * 49.64157 * 11 10 9 13 13 S 1.65601 * 120.59741 * 124.62063 * 12 11 10 14 14 O 1.42108 * 106.39821 * 23.56743 * 13 12 11 15 15 O 1.42099 * 106.40122 * 156.48219 * 13 12 11 16 16 C 1.76192 * 107.21921 * 270.02589 * 13 12 11 17 17 C 1.32578 * 120.00074 * 114.99736 * 16 13 12 18 18 C 1.47796 * 120.00097 * 179.97438 * 17 16 13 19 19 C 1.39554 * 120.11613 * 359.72501 * 18 17 16 20 20 C 1.37926 * 119.88262 * 179.73988 * 19 18 17 21 21 C 1.38576 * 120.11730 * 0.53596 * 20 19 18 22 22 F 1.35095 * 119.88433 * 179.74005 * 21 20 19 23 23 C 1.38580 * 120.23100 * 359.72068 * 21 20 19 24 24 C 1.37923 * 120.11519 * 0.02562 * 23 21 20 25 25 C 1.46969 * 118.80923 * 304.64744 * 12 11 10 26 26 C 1.46971 * 120.58954 * 331.57456 * 9 7 2 27 27 H 0.97004 * 120.00510 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.60931 * 244.54512 * 10 9 7 29 29 H 1.09004 * 109.60392 * 5.05580 * 10 9 7 30 30 H 1.09002 * 109.74746 * 289.85471 * 11 10 9 31 31 H 1.09000 * 109.67655 * 169.39066 * 11 10 9 32 32 H 1.07998 * 120.00037 * 294.99470 * 16 13 12 33 33 H 1.07996 * 120.00080 * 0.02562 * 17 16 13 34 34 H 1.07999 * 120.05653 * 0.02562 * 19 18 17 35 35 H 1.08001 * 119.94324 * 180.25270 * 20 19 18 36 36 H 1.07999 * 119.93714 * 179.97438 * 23 21 20 37 37 H 1.08006 * 120.05702 * 180.02562 * 24 23 21 38 38 H 1.09001 * 109.60759 * 295.47709 * 25 12 11 39 39 H 1.08997 * 109.60686 * 174.97196 * 25 12 11 40 40 H 1.08993 * 109.60915 * 354.94812 * 26 9 7 41 41 H 1.09004 * 109.60752 * 115.28520 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3964 -1.2126 6 1 1.8912 2.3966 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0530 -1.2236 -0.2799 9 7 1.3715 -2.3614 0.3513 10 6 1.8066 -3.6519 -0.2012 11 6 2.1104 -4.6031 0.9687 12 7 0.9734 -4.5785 1.8996 13 16 0.2001 -5.9803 2.3229 14 8 1.1330 -7.0318 2.1144 15 8 -0.4240 -5.7319 3.5751 16 6 -1.0997 -6.2306 1.1600 17 6 -1.0669 -7.2745 0.3435 18 6 -2.1575 -7.4847 -0.6315 19 6 -3.2260 -6.5890 -0.6909 20 6 -4.2385 -6.7868 -1.6064 21 6 -4.2017 -7.8788 -2.4587 22 9 -5.1986 -8.0709 -3.3500 23 6 -3.1457 -8.7743 -2.4002 24 6 -2.1255 -8.5828 -1.4921 25 6 0.5346 -3.2873 2.4477 26 6 0.2345 -2.3367 1.2822 27 1 -0.4851 0.8400 -0.0004 28 1 1.0135 -4.0708 -0.8204 29 1 2.7054 -3.5085 -0.8010 30 1 3.0128 -4.2756 1.4848 31 1 2.2521 -5.6157 0.5910 32 1 -1.9233 -5.5335 1.1124 33 1 -0.2436 -7.9718 0.3914 34 1 -3.2576 -5.7398 -0.0243 35 1 -5.0638 -6.0920 -1.6559 36 1 -3.1220 -9.6240 -3.0665 37 1 -1.3027 -9.2811 -1.4476 38 1 1.3249 -2.8662 3.0691 39 1 -0.3662 -3.4304 3.0444 40 1 0.0947 -1.3247 1.6622 41 1 -0.6687 -2.6613 0.7653 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175257553.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:33 Heat of formation + Delta-G solvation = -39.932447 kcal Electronic energy + Delta-G solvation = -27148.669807 eV Core-core repulsion = 23071.602325 eV Total energy + Delta-G solvation = -4077.067483 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.23762 -39.48136 -37.62708 -37.07570 -35.68378 -34.49598 -33.85150 -31.58980 -31.13242 -30.20587 -29.52648 -26.44444 -24.14356 -23.34797 -23.21007 -22.91471 -20.93568 -19.84729 -18.52576 -18.19096 -17.70929 -17.18012 -16.41282 -16.14756 -15.91863 -15.88507 -15.50262 -14.84720 -14.68483 -14.06623 -13.96288 -13.80228 -13.67426 -13.59306 -13.46558 -13.06395 -13.00275 -12.74562 -12.49786 -12.15407 -12.04576 -11.90244 -11.43079 -11.32808 -11.17970 -10.94017 -10.86578 -10.78427 -10.75306 -10.42989 -10.26146 -9.99328 -9.75416 -9.51120 -8.82555 -8.67783 -8.50791 -6.73875 -5.87890 -3.32005 0.12945 0.64586 0.87834 1.72430 3.17380 3.32297 3.35889 3.41096 3.42837 3.84884 3.89886 4.25921 4.39268 4.42451 4.49476 4.62047 4.83931 4.85065 5.00228 5.10434 5.28822 5.47121 5.50842 5.55538 5.69673 5.72151 5.73554 5.83766 5.85306 5.90788 6.01319 6.23417 6.30610 6.32725 6.40069 6.48039 6.59415 6.77539 6.87963 7.21691 7.50650 7.71587 8.34283 9.10530 9.73316 10.30141 11.19777 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.011095 B = 0.003374 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.153256 B = 8297.873869 C = 9957.053585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.903 3.097 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.288 1.288 7 C -0.254 4.254 8 H 0.068 0.932 9 N -0.589 5.589 10 C 0.131 3.869 11 C 0.105 3.895 12 N -0.985 5.985 13 S 2.681 3.319 14 O -0.971 6.971 15 O -0.963 6.963 16 C -0.735 4.735 17 C 0.041 3.959 18 C -0.098 4.098 19 C -0.059 4.059 20 C -0.156 4.156 21 C 0.112 3.888 22 F -0.137 7.137 23 C -0.160 4.160 24 C -0.063 4.063 25 C 0.094 3.906 26 C 0.156 3.844 27 H 0.254 0.746 28 H 0.023 0.977 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.161 0.839 33 H 0.146 0.854 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.100 0.900 41 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.232 -16.182 -1.498 17.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.195 4.195 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.218 1.218 6 H -0.215 1.215 7 C -0.384 4.384 8 H 0.086 0.914 9 N -0.311 5.311 10 C 0.003 3.997 11 C -0.022 4.022 12 N -0.824 5.824 13 S 2.772 3.228 14 O -0.961 6.961 15 O -0.953 6.953 16 C -0.840 4.840 17 C 0.021 3.979 18 C -0.099 4.099 19 C -0.077 4.077 20 C -0.175 4.175 21 C 0.093 3.907 22 F -0.116 7.116 23 C -0.179 4.179 24 C -0.081 4.081 25 C -0.032 4.032 26 C 0.029 3.971 27 H 0.064 0.936 28 H 0.040 0.960 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.179 0.821 33 H 0.163 0.837 34 H 0.159 0.841 35 H 0.159 0.841 36 H 0.158 0.842 37 H 0.159 0.841 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.118 0.882 41 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -5.174 -16.551 -0.840 17.362 hybrid contribution -0.457 1.179 -0.948 1.580 sum -5.631 -15.372 -1.788 16.468 Atomic orbital electron populations 1.70013 1.05310 1.25590 1.53754 1.25057 0.95288 0.98523 1.00664 0.86217 0.79406 0.83790 0.77297 1.20210 1.21751 1.21485 1.19246 0.92779 0.84673 1.41664 0.91444 1.43924 1.36521 1.01568 1.49117 1.21382 0.98319 0.87476 0.92570 1.22134 0.87872 1.00377 0.91848 1.57376 1.43365 1.21809 1.59896 1.02120 0.73617 0.72790 0.74262 1.93534 1.61290 1.54620 1.86671 1.93573 1.77461 1.85008 1.39265 1.34197 1.23203 1.07644 1.18937 1.21927 0.94329 0.93842 0.87781 1.19270 0.95943 0.96562 0.98158 1.21362 0.91698 0.98164 0.96456 1.21167 1.01325 0.98044 0.96968 1.17909 0.86664 0.96272 0.89872 1.91515 1.59242 1.94912 1.65921 1.21106 0.94340 1.00672 1.01756 1.21245 0.97689 0.96147 0.92991 1.22374 0.99543 0.83126 0.98131 1.21197 0.89065 0.98776 0.88104 0.93563 0.95955 0.91550 0.91094 0.90332 0.82120 0.83681 0.84066 0.84088 0.84204 0.84081 0.91268 0.90344 0.88212 0.95973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.87 11.20 55.49 0.62 -24.25 16 2 C 0.00 0.09 4.91 -17.44 -0.09 0.00 16 3 Si 0.90 20.83 29.59 -169.99 -5.03 15.80 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.25 -6.58 9.57 -15.06 -0.14 -6.72 16 8 H 0.07 1.72 7.89 -52.48 -0.41 1.30 16 9 N -0.59 -13.73 2.96 -171.77 -0.51 -14.24 16 10 C 0.13 2.50 6.70 -3.37 -0.02 2.47 16 11 C 0.10 1.70 6.57 -3.37 -0.02 1.67 16 12 N -0.98 -16.27 3.26 -113.01 -0.37 -16.64 16 13 S 2.68 40.67 5.85 -107.50 -0.63 40.04 16 14 O -0.97 -15.59 15.58 -57.17 -0.89 -16.48 16 15 O -0.96 -17.01 16.71 -57.17 -0.96 -17.97 16 16 C -0.73 -9.52 9.74 28.83 0.28 -9.24 16 17 C 0.04 0.47 9.42 -37.58 -0.35 0.12 16 18 C -0.10 -1.05 5.87 -105.01 -0.62 -1.67 16 19 C -0.06 -0.64 9.40 -39.21 -0.37 -1.01 16 20 C -0.16 -1.58 10.01 -39.57 -0.40 -1.98 16 21 C 0.11 1.14 7.30 -39.33 -0.29 0.85 16 22 F -0.14 -1.47 17.26 2.25 0.04 -1.43 16 23 C -0.16 -1.40 10.01 -39.57 -0.40 -1.79 16 24 C -0.06 -0.55 9.78 -39.21 -0.38 -0.93 16 25 C 0.09 1.70 6.55 -3.60 -0.02 1.68 16 26 C 0.16 3.42 5.51 -3.60 -0.02 3.40 16 27 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 1.22 7.93 -51.93 -0.41 0.81 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.08 1.09 7.09 -51.93 -0.37 0.72 16 32 H 0.16 1.96 6.03 -52.49 -0.32 1.65 16 33 H 0.15 1.43 7.21 -52.49 -0.38 1.06 16 34 H 0.14 1.44 6.16 -52.49 -0.32 1.12 16 35 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.08 1.28 7.09 -51.93 -0.37 0.92 16 40 H 0.10 2.45 6.00 -51.93 -0.31 2.14 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 355.53 15.07 5.36 5.36 Total: -1.00 -31.82 355.53 -10.19 -42.01 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -4.99 Total: 0.93 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: -2.84 Total: -13.14 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: -0.26 Total: -55.13 kcal Atomic # 8 Polarization: -32.60 SS G_CDS: -1.85 Total: -34.45 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.03 Total: 15.80 kcal Atomic # 16 Polarization: 40.67 SS G_CDS: -0.63 Total: 40.04 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.82 -10.19 -42.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175257553.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.079 kcal (2) G-P(sol) polarization free energy of solvation -31.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds