Wall clock time and date at job start Sat Apr 11 2020 05:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86805 * 119.99963 * 2 1 4 4 H 1.48499 * 109.46987 * 274.98092 * 3 2 1 5 5 H 1.48506 * 109.47238 * 34.97467 * 3 2 1 6 6 H 1.48492 * 109.47225 * 154.98049 * 3 2 1 7 7 C 1.40046 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99932 * 186.15244 * 7 2 1 9 9 C 1.46374 * 120.00222 * 6.15886 * 7 2 1 10 10 O 1.21688 * 119.99668 * 353.93787 * 9 7 2 11 11 N 1.34774 * 119.99896 * 173.93188 * 9 7 2 12 12 C 1.46508 * 119.99501 * 179.97438 * 11 9 7 13 13 H 1.08994 * 109.50603 * 325.00481 * 12 11 9 14 14 C 1.53121 * 109.50118 * 85.08442 * 12 11 9 15 15 C 1.53119 * 109.15712 * 177.59367 * 14 12 11 16 16 C 1.53031 * 109.27964 * 302.34480 * 15 14 12 17 17 N 1.46840 * 109.52575 * 59.17773 * 16 15 14 18 18 C 1.46904 * 111.00345 * 174.16022 * 17 16 15 19 19 C 1.50702 * 109.46853 * 293.96054 * 18 17 16 20 20 C 1.38241 * 119.98082 * 105.00081 * 19 18 17 21 21 C 1.38190 * 120.03886 * 179.97438 * 20 19 18 22 22 C 1.38493 * 119.99736 * 359.95100 * 21 20 19 23 23 F 1.35097 * 120.01470 * 180.02562 * 22 21 20 24 24 C 1.38412 * 119.96027 * 0.02562 * 22 21 20 25 25 C 1.38329 * 119.96632 * 359.76424 * 24 22 21 26 26 Cl 1.73598 * 120.00188 * 180.25693 * 25 24 22 27 27 C 1.46847 * 111.23721 * 298.27830 * 17 16 15 28 28 H 0.97003 * 120.00123 * 0.02562 * 1 2 3 29 29 H 0.96998 * 120.00574 * 359.73192 * 11 9 7 30 30 H 1.09005 * 109.51957 * 297.49808 * 14 12 11 31 31 H 1.08999 * 109.52236 * 57.68870 * 14 12 11 32 32 H 1.08994 * 109.50419 * 62.28491 * 15 14 12 33 33 H 1.09009 * 109.50027 * 182.36244 * 15 14 12 34 34 H 1.08995 * 109.46483 * 179.20029 * 16 15 14 35 35 H 1.09002 * 109.46067 * 299.16456 * 16 15 14 36 36 H 1.09003 * 109.46599 * 53.95519 * 18 17 16 37 37 H 1.08997 * 109.47466 * 173.95919 * 18 17 16 38 38 H 1.07997 * 119.98372 * 359.96949 * 20 19 18 39 39 H 1.07995 * 120.00232 * 179.97438 * 21 20 19 40 40 H 1.08010 * 120.01637 * 180.02562 * 24 22 21 41 41 H 1.08999 * 109.43213 * 301.69164 * 27 17 16 42 42 H 1.08999 * 109.49983 * 181.71048 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3829 2.1072 -1.3948 5 1 1.4947 2.6201 0.8026 6 1 3.5869 1.4122 0.5921 7 6 2.0070 -1.2128 0.0005 8 1 3.0824 -1.2154 0.1008 9 6 1.2815 -2.4769 -0.1349 10 8 0.0647 -2.4828 -0.1370 11 7 1.9613 -3.6342 -0.2574 12 6 1.2351 -4.8994 -0.3924 13 1 0.3233 -4.8611 0.2036 14 6 0.8753 -5.1279 -1.8631 15 6 0.1702 -6.4798 -2.0037 16 6 1.0839 -7.5844 -1.4682 17 7 1.3985 -7.3206 -0.0583 18 6 2.1600 -8.4316 0.5281 19 6 1.2932 -9.6633 0.5784 20 6 1.4985 -10.6899 -0.3243 21 6 0.7046 -11.8201 -0.2789 22 6 -0.2966 -11.9252 0.6722 23 9 -1.0725 -13.0303 0.7172 24 6 -0.5018 -10.8975 1.5763 25 6 0.2966 -9.7688 1.5322 26 17 0.0444 -8.4822 2.6700 27 6 2.1177 -6.0498 0.0974 28 1 -0.4850 0.8401 -0.0004 29 1 2.9313 -3.6291 -0.2597 30 1 0.2111 -4.3334 -2.2032 31 1 1.7842 -5.1268 -2.4648 32 1 -0.7583 -6.4670 -1.4330 33 1 -0.0511 -6.6672 -3.0545 34 1 0.5791 -8.5466 -1.5538 35 1 2.0064 -7.6056 -2.0483 36 1 3.0400 -8.6314 -0.0833 37 1 2.4720 -8.1653 1.5379 38 1 2.2796 -10.6086 -1.0657 39 1 0.8653 -12.6216 -0.9847 40 1 -1.2821 -10.9787 2.3187 41 1 3.0357 -6.0784 -0.4896 42 1 2.3632 -5.8971 1.1483 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185869448.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:46 Heat of formation + Delta-G solvation = -67.260740 kcal Electronic energy + Delta-G solvation = -26831.675983 eV Core-core repulsion = 22751.379751 eV Total energy + Delta-G solvation = -4080.296233 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.26321 -40.00168 -38.71463 -36.87862 -36.52711 -34.16729 -32.62817 -32.07117 -31.37095 -30.85719 -28.89617 -26.26764 -26.00269 -23.51292 -23.09971 -22.54120 -21.41806 -19.71366 -19.34411 -18.12980 -17.20141 -17.00252 -16.20295 -16.03642 -15.77403 -15.33949 -14.98184 -14.76763 -14.44399 -14.17067 -14.13377 -13.97272 -13.70630 -13.48270 -13.38762 -12.93038 -12.45721 -12.28572 -12.18860 -12.00006 -11.77020 -11.53269 -11.51213 -11.16615 -11.04642 -10.92897 -10.90329 -10.56021 -10.43101 -10.24094 -10.16439 -10.02013 -9.31073 -8.90350 -8.82749 -8.27668 -7.57280 -7.46898 -6.17062 -4.61286 0.64483 0.71482 1.94271 3.02563 3.14637 3.21898 3.25243 3.86074 3.88501 4.14134 4.31278 4.40595 4.52384 4.61202 4.77482 4.90006 5.04565 5.10680 5.23107 5.25307 5.28581 5.41884 5.52787 5.56348 5.59324 5.62638 5.71308 5.75533 5.85469 5.93583 5.96890 6.06459 6.09761 6.34938 6.39481 6.44934 6.82181 6.86720 7.09946 7.13740 7.45721 7.96313 8.15170 8.36236 9.04984 9.57258 10.62747 10.82104 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.024537 B = 0.002394 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.879200 B =11693.132778 C =12060.687143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.067 0.933 9 C 0.558 3.442 10 O -0.578 6.578 11 N -0.763 5.763 12 C 0.162 3.838 13 H 0.084 0.916 14 C -0.128 4.128 15 C -0.113 4.113 16 C 0.057 3.943 17 N -0.524 5.524 18 C 0.093 3.907 19 C -0.078 4.078 20 C -0.075 4.075 21 C -0.153 4.153 22 C 0.109 3.891 23 F -0.136 7.136 24 C -0.151 4.151 25 C 0.014 3.986 26 Cl -0.035 7.035 27 C 0.056 3.944 28 H 0.268 0.732 29 H 0.377 0.623 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.031 0.969 36 H 0.047 0.953 37 H 0.091 0.909 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.145 0.855 41 H 0.032 0.968 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.577 -23.480 -0.253 23.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.085 0.915 9 C 0.361 3.639 10 O -0.460 6.460 11 N -0.417 5.417 12 C 0.055 3.945 13 H 0.102 0.898 14 C -0.168 4.168 15 C -0.152 4.152 16 C -0.070 4.070 17 N -0.248 5.248 18 C -0.035 4.035 19 C -0.079 4.079 20 C -0.093 4.093 21 C -0.171 4.171 22 C 0.089 3.911 23 F -0.114 7.114 24 C -0.170 4.170 25 C -0.013 4.013 26 Cl -0.005 7.005 27 C -0.072 4.072 28 H 0.078 0.922 29 H 0.208 0.792 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.049 0.951 36 H 0.065 0.935 37 H 0.109 0.891 38 H 0.157 0.843 39 H 0.158 0.842 40 H 0.163 0.837 41 H 0.051 0.949 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.998 -23.225 0.130 23.418 hybrid contribution 1.478 0.570 -0.413 1.637 sum 4.476 -22.655 -0.283 23.095 Atomic orbital electron populations 1.70028 1.07032 1.27176 1.35390 1.25692 0.94574 1.00226 0.92668 0.86393 0.80246 0.81673 0.78624 1.19868 1.20487 1.18943 1.20885 0.94037 0.89658 1.53811 0.91523 1.18179 0.87154 0.82318 0.76222 1.90602 1.14037 1.86260 1.55124 1.46161 1.08359 1.05635 1.81573 1.20392 0.95954 0.83343 0.94776 0.89792 1.22009 1.00084 0.96624 0.98054 1.21535 0.99226 0.94371 1.00019 1.22135 0.98356 0.99149 0.87407 1.61787 1.45085 1.01165 1.16791 1.21015 0.92892 0.88143 1.01409 1.19768 0.96772 0.96597 0.94804 1.20904 0.98891 0.91839 0.97701 1.21179 0.96243 1.00141 0.99580 1.17466 0.92141 0.84024 0.97479 1.91522 1.73383 1.50613 1.95891 1.21005 1.02040 0.92761 1.01224 1.20512 0.96415 0.90332 0.94055 1.98430 1.95682 1.48311 1.58112 1.22326 0.94888 0.88647 1.01309 0.92171 0.79163 0.91042 0.93073 0.91046 0.91955 0.91172 0.95122 0.93519 0.89073 0.84282 0.84234 0.83717 0.94945 0.90431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.07 11.85 55.55 0.66 -22.42 16 2 C 0.09 2.46 5.49 -17.37 -0.10 2.36 16 3 Si 0.91 20.16 29.56 -169.99 -5.03 15.13 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 6 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.55 -15.37 9.53 -35.63 -0.34 -15.71 16 8 H 0.07 1.72 7.86 -52.48 -0.41 1.31 16 9 C 0.56 15.67 7.71 -12.99 -0.10 15.57 16 10 O -0.58 -18.56 14.71 5.20 0.08 -18.48 16 11 N -0.76 -16.69 5.07 -55.13 -0.28 -16.97 16 12 C 0.16 3.06 2.62 -67.84 -0.18 2.88 16 13 H 0.08 1.90 7.58 -51.93 -0.39 1.50 16 14 C -0.13 -2.24 5.58 -26.61 -0.15 -2.39 16 15 C -0.11 -1.59 6.09 -26.65 -0.16 -1.75 16 16 C 0.06 0.68 5.30 -3.84 -0.02 0.66 16 17 N -0.52 -6.57 4.56 -236.12 -1.08 -7.64 16 18 C 0.09 0.93 4.43 -4.97 -0.02 0.91 16 19 C -0.08 -0.74 4.43 -104.58 -0.46 -1.21 16 20 C -0.07 -0.57 8.94 -39.60 -0.35 -0.93 16 21 C -0.15 -1.17 10.03 -39.50 -0.40 -1.57 16 22 C 0.11 1.00 7.30 -39.42 -0.29 0.71 16 23 F -0.14 -1.33 17.27 2.25 0.04 -1.29 16 24 C -0.15 -1.45 9.81 -39.48 -0.39 -1.84 16 25 C 0.01 0.15 6.31 -39.51 -0.25 -0.10 16 26 Cl -0.03 -0.41 27.55 -51.86 -1.43 -1.84 16 27 C 0.06 0.81 4.93 -3.83 -0.02 0.79 16 28 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 29 H 0.38 7.25 8.58 -40.82 -0.35 6.90 16 30 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 34 H 0.07 0.76 6.56 -51.93 -0.34 0.42 16 35 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.05 0.40 7.93 -51.93 -0.41 -0.01 16 37 H 0.09 0.93 7.41 -51.93 -0.38 0.54 16 38 H 0.14 0.77 8.00 -52.49 -0.42 0.35 16 39 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 40 H 0.15 1.23 8.06 -52.48 -0.42 0.81 16 41 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 1.12 8.01 -51.93 -0.42 0.71 16 LS Contribution 365.60 15.07 5.51 5.51 Total: -1.00 -33.48 365.60 -10.40 -43.88 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -5.65 Total: 5.73 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -3.22 Total: -1.61 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: -0.70 Total: -47.03 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: 0.08 Total: -18.48 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.03 Total: 15.13 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.43 Total: -1.84 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.48 -10.40 -43.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185869448.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.382 kcal (2) G-P(sol) polarization free energy of solvation -33.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds