Wall clock time and date at job start Sat Apr 11 2020 05:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38275 * 119.98683 * 2 1 4 4 C 1.38224 * 120.04736 * 179.75063 * 3 2 1 5 5 C 1.38213 * 120.02435 * 0.54606 * 4 3 2 6 6 C 1.50704 * 120.01072 * 179.72328 * 5 4 3 7 7 S 1.81397 * 109.47243 * 269.72993 * 6 5 4 8 8 O 1.42105 * 110.54189 * 68.37547 * 7 6 5 9 9 O 1.42099 * 110.54203 * 291.62286 * 7 6 5 10 10 N 1.65608 * 104.44917 * 179.97438 * 7 6 5 11 11 C 1.46494 * 119.99583 * 90.00089 * 10 7 6 12 12 C 1.50703 * 109.47225 * 95.00259 * 11 10 7 13 13 H 1.07996 * 120.00066 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99842 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99597 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 120.00371 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.47175 * 89.99893 * 16 14 12 18 18 H 1.48496 * 109.47237 * 209.99970 * 16 14 12 19 19 H 1.48502 * 109.46952 * 330.00114 * 16 14 12 20 20 C 1.46493 * 119.99916 * 269.72772 * 10 7 6 21 21 C 1.52997 * 109.47398 * 95.00006 * 20 10 7 22 22 C 1.47205 * 109.47219 * 179.97438 * 21 20 10 23 23 N 9.62581 * 155.93798 * 0.80500 * 2 1 3 24 24 C 1.38435 * 119.97726 * 359.45235 * 5 4 3 25 25 F 1.35102 * 120.02372 * 180.29325 * 24 5 4 26 26 C 1.38169 * 119.98787 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.46913 * 269.98086 * 1 2 3 28 28 H 1.09004 * 109.46852 * 29.97375 * 1 2 3 29 29 H 1.08997 * 109.47164 * 149.97652 * 1 2 3 30 30 H 1.08003 * 119.97206 * 0.02562 * 3 2 1 31 31 H 1.07999 * 119.98143 * 180.27950 * 4 3 2 32 32 H 1.09001 * 109.46999 * 149.72542 * 6 5 4 33 33 H 1.09001 * 109.47056 * 29.73056 * 6 5 4 34 34 H 1.09005 * 109.47101 * 215.00381 * 11 10 7 35 35 H 1.09001 * 109.47746 * 334.99625 * 11 10 7 36 36 H 0.97008 * 119.99656 * 179.97438 * 15 14 12 37 37 H 1.09004 * 109.46868 * 214.99641 * 20 10 7 38 38 H 1.09004 * 109.47439 * 334.99764 * 20 10 7 39 39 H 1.08995 * 109.47096 * 299.99700 * 21 20 10 40 40 H 1.08997 * 109.47293 * 59.99772 * 21 20 10 41 41 H 1.08000 * 120.01055 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1977 0.0000 4 6 3.5804 1.1991 0.0052 5 6 4.2733 0.0032 -0.0010 6 6 5.7803 0.0052 -0.0016 7 16 6.3843 0.0064 -1.7121 8 8 6.0863 1.2432 -2.3453 9 8 6.0896 -1.2309 -2.3458 10 7 8.0341 0.0093 -1.5677 11 6 8.7659 -1.2582 -1.5040 12 6 9.2470 -1.6304 -2.8829 13 1 9.0290 -0.9873 -3.7227 14 6 9.9654 -2.7919 -3.0721 15 7 10.3848 -3.1169 -4.2755 16 14 10.3431 -3.9038 -1.6194 17 1 9.2519 -4.8985 -1.4606 18 1 11.6267 -4.6112 -1.8581 19 1 10.4507 -3.0857 -0.3848 20 6 8.7620 1.2792 -1.5098 21 6 8.9988 1.6652 -0.0484 22 6 9.7309 2.9410 0.0097 23 7 10.2964 3.9243 0.0551 24 6 3.5824 -1.1964 -0.0009 25 9 4.2588 -2.3660 -0.0010 26 6 2.1977 -1.1967 -0.0005 27 1 -0.3633 -0.0003 1.0277 28 1 -0.3633 0.8903 -0.5135 29 1 -0.3633 -0.8897 -0.5142 30 1 1.6575 2.1326 0.0004 31 1 4.1191 2.1352 0.0098 32 1 6.1450 -0.8844 0.5120 33 1 6.1427 0.8956 0.5123 34 1 9.6215 -1.1506 -0.8374 35 1 8.1069 -2.0397 -1.1259 36 1 10.8906 -3.9339 -4.4086 37 1 9.7208 1.1718 -2.0171 38 1 8.1763 2.0565 -2.0006 39 1 8.0401 1.7726 0.4589 40 1 9.5845 0.8880 0.4424 41 1 1.6576 -2.1320 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192021159.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:54 Heat of formation + Delta-G solvation = -62.806222 kcal Electronic energy + Delta-G solvation = -27507.500951 eV Core-core repulsion = 23429.441587 eV Total energy + Delta-G solvation = -4078.059364 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -48.98120 -39.55069 -37.36305 -36.68791 -35.90259 -35.42523 -34.28894 -32.70439 -30.98785 -30.83522 -29.89049 -27.58581 -25.59689 -23.75210 -23.15557 -21.95813 -21.35648 -18.43873 -17.81079 -17.36948 -17.09386 -16.95508 -16.82859 -16.35207 -15.86733 -15.79799 -15.33535 -14.83646 -14.48030 -14.37029 -13.94534 -13.91464 -13.74403 -13.67353 -13.42457 -13.13302 -12.73130 -12.59436 -12.45866 -12.32894 -12.24042 -12.15870 -11.94435 -11.85914 -11.62305 -11.53368 -11.39615 -11.31654 -11.05994 -10.87231 -10.62843 -10.50880 -10.28283 -9.59374 -9.14085 -8.78320 -8.61478 -8.29613 -6.09895 -4.09801 0.32934 0.93579 1.00630 2.69269 2.79810 3.06568 3.25245 3.26043 3.29268 3.34463 3.95333 3.97814 4.09956 4.22255 4.34087 4.35789 4.51190 4.55844 4.84689 4.93214 4.96877 5.08342 5.12661 5.16879 5.20017 5.23907 5.26924 5.39129 5.47578 5.54656 5.70732 5.80052 5.83622 5.98872 6.06998 6.17107 6.24182 6.58491 6.61013 6.89687 7.14524 7.52277 7.56419 8.45448 8.96051 9.48139 11.03588 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.010487 B = 0.004359 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.349482 B = 6422.270630 C = 8219.432257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.054 4.054 3 C -0.131 4.131 4 C -0.075 4.075 5 C -0.127 4.127 6 C -0.604 4.604 7 S 2.599 3.401 8 O -0.958 6.958 9 O -0.918 6.918 10 N -0.975 5.975 11 C 0.221 3.779 12 C -0.531 4.531 13 H 0.080 0.920 14 C 0.074 3.926 15 N -0.893 5.893 16 Si 0.868 3.132 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.264 1.264 20 C 0.122 3.878 21 C -0.056 4.056 22 C 0.218 3.782 23 N -0.441 5.441 24 C 0.119 3.881 25 F -0.124 7.124 26 C -0.155 4.155 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.135 0.865 31 H 0.141 0.859 32 H 0.144 0.856 33 H 0.141 0.859 34 H 0.038 0.962 35 H 0.034 0.966 36 H 0.265 0.735 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.119 0.881 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.537 6.912 13.821 22.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.055 4.055 3 C -0.149 4.149 4 C -0.094 4.094 5 C -0.129 4.129 6 C -0.728 4.728 7 S 2.689 3.311 8 O -0.948 6.948 9 O -0.908 6.908 10 N -0.812 5.812 11 C 0.098 3.902 12 C -0.570 4.570 13 H 0.098 0.902 14 C -0.129 4.129 15 N -0.531 5.531 16 Si 0.695 3.305 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.188 1.188 20 C -0.006 4.006 21 C -0.098 4.098 22 C -0.101 4.101 23 N -0.118 5.118 24 C 0.099 3.901 25 F -0.102 7.102 26 C -0.174 4.174 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.152 0.848 31 H 0.159 0.841 32 H 0.162 0.838 33 H 0.160 0.840 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.075 0.925 37 H 0.122 0.878 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.137 0.863 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -16.011 8.160 12.999 22.179 hybrid contribution 0.447 -1.448 1.450 2.097 sum -15.564 6.712 14.449 22.272 Atomic orbital electron populations 1.20845 0.90187 1.03482 1.02774 1.19848 0.96619 0.92204 0.96810 1.21102 0.93761 0.98087 1.01933 1.21055 0.94469 0.96991 0.96841 1.19049 0.92879 0.93136 1.07851 1.29948 1.00335 1.12494 1.30003 1.05628 0.73827 0.74858 0.76791 1.93536 1.83939 1.45852 1.71489 1.93671 1.82938 1.44062 1.70108 1.57334 1.23207 1.12204 1.88420 1.19581 0.92306 0.79142 0.99131 1.21308 1.34500 1.08033 0.93146 0.90189 1.24858 0.95254 0.97163 0.95584 1.69891 1.37305 1.24847 1.21052 0.86985 0.78399 0.81803 0.83323 1.19713 1.20974 1.18841 1.21163 1.01002 0.85924 0.92539 1.19974 0.99742 0.88279 1.01830 1.28918 0.93537 0.94404 0.93210 1.81178 1.09935 1.12174 1.08534 1.17582 0.90271 0.81085 1.01206 1.91576 1.80045 1.45315 1.93299 1.21048 0.91819 0.99738 1.04783 0.90622 0.90885 0.91006 0.84757 0.84113 0.83792 0.84036 0.94378 0.94841 0.92481 0.87810 0.88663 0.88165 0.86284 0.84162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.68 10.01 36.01 0.36 -0.32 16 2 C -0.05 -0.49 5.88 -104.63 -0.62 -1.11 16 3 C -0.13 -1.17 9.70 -39.57 -0.38 -1.56 16 4 C -0.07 -0.78 9.70 -39.60 -0.38 -1.16 16 5 C -0.13 -1.60 5.15 -104.56 -0.54 -2.14 16 6 C -0.60 -7.27 6.13 36.01 0.22 -7.05 16 7 S 2.60 45.18 5.36 -107.50 -0.58 44.61 16 8 O -0.96 -17.55 16.52 -57.54 -0.95 -18.50 16 9 O -0.92 -20.51 16.99 -57.54 -0.98 -21.48 16 10 N -0.98 -16.88 2.70 -115.67 -0.31 -17.19 16 11 C 0.22 4.62 4.08 -5.20 -0.02 4.60 16 12 C -0.53 -14.28 9.94 -34.44 -0.34 -14.62 16 13 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 14 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 15 N -0.89 -26.80 13.96 55.43 0.77 -26.02 16 16 Si 0.87 20.08 27.47 -169.99 -4.67 15.42 16 17 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.26 -5.46 6.54 56.52 0.37 -5.09 16 20 C 0.12 1.71 5.61 -4.05 -0.02 1.69 16 21 C -0.06 -0.56 6.03 -29.52 -0.18 -0.74 16 22 C 0.22 2.66 15.43 -20.78 -0.32 2.34 16 23 N -0.44 -6.59 18.53 42.13 0.78 -5.80 16 24 C 0.12 1.60 7.24 -39.42 -0.29 1.31 16 25 F -0.12 -1.90 16.48 2.25 0.04 -1.87 16 26 C -0.16 -1.68 9.68 -39.52 -0.38 -2.06 16 27 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 29 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 30 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 31 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.14 1.60 7.64 -51.92 -0.40 1.20 16 33 H 0.14 1.11 6.92 -51.92 -0.36 0.75 16 34 H 0.04 0.72 7.17 -51.93 -0.37 0.34 16 35 H 0.03 0.70 7.04 -51.93 -0.37 0.33 16 36 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.10 1.55 8.11 -51.93 -0.42 1.13 16 38 H 0.10 1.29 6.81 -51.93 -0.35 0.94 16 39 H 0.10 0.68 6.98 -51.93 -0.36 0.32 16 40 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 372.45 15.07 5.61 5.61 Total: -1.00 -36.34 372.45 -8.44 -44.79 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -5.17 Total: -0.72 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: -2.99 Total: -18.83 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: 1.24 Total: -49.02 kcal Atomic # 8 Polarization: -38.05 SS G_CDS: -1.93 Total: -39.98 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -4.67 Total: 15.42 kcal Atomic # 16 Polarization: 45.18 SS G_CDS: -0.58 Total: 44.61 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.34 -8.44 -44.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192021159.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.021 kcal (2) G-P(sol) polarization free energy of solvation -36.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds