Wall clock time and date at job start Sat Apr 11 2020 05:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38275 * 119.98683 * 2 1 4 4 C 1.38224 * 120.04736 * 179.75063 * 3 2 1 5 5 C 1.38213 * 120.02435 * 0.54606 * 4 3 2 6 6 C 1.50704 * 120.01072 * 179.72328 * 5 4 3 7 7 S 1.81397 * 109.47243 * 269.72993 * 6 5 4 8 8 O 1.42105 * 110.54189 * 68.37547 * 7 6 5 9 9 O 1.42099 * 110.54203 * 291.62286 * 7 6 5 10 10 N 1.65608 * 104.44917 * 179.97438 * 7 6 5 11 11 C 1.46494 * 119.99583 * 90.00089 * 10 7 6 12 12 C 1.50703 * 109.47225 * 95.00259 * 11 10 7 13 13 H 1.07996 * 120.00066 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99842 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99597 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 120.00371 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.47175 * 89.99893 * 16 14 12 18 18 H 1.48496 * 109.47237 * 209.99970 * 16 14 12 19 19 H 1.48502 * 109.46952 * 330.00114 * 16 14 12 20 20 C 1.46493 * 119.99916 * 269.72772 * 10 7 6 21 21 C 1.52997 * 109.47398 * 95.00006 * 20 10 7 22 22 C 1.47205 * 109.47219 * 179.97438 * 21 20 10 23 23 N 9.62581 * 155.93798 * 0.80500 * 2 1 3 24 24 C 1.38435 * 119.97726 * 359.45235 * 5 4 3 25 25 F 1.35102 * 120.02372 * 180.29325 * 24 5 4 26 26 C 1.38169 * 119.98787 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.46913 * 269.98086 * 1 2 3 28 28 H 1.09004 * 109.46852 * 29.97375 * 1 2 3 29 29 H 1.08997 * 109.47164 * 149.97652 * 1 2 3 30 30 H 1.08003 * 119.97206 * 0.02562 * 3 2 1 31 31 H 1.07999 * 119.98143 * 180.27950 * 4 3 2 32 32 H 1.09001 * 109.46999 * 149.72542 * 6 5 4 33 33 H 1.09001 * 109.47056 * 29.73056 * 6 5 4 34 34 H 1.09005 * 109.47101 * 215.00381 * 11 10 7 35 35 H 1.09001 * 109.47746 * 334.99625 * 11 10 7 36 36 H 0.97008 * 119.99656 * 179.97438 * 15 14 12 37 37 H 1.09004 * 109.46868 * 214.99641 * 20 10 7 38 38 H 1.09004 * 109.47439 * 334.99764 * 20 10 7 39 39 H 1.08995 * 109.47096 * 299.99700 * 21 20 10 40 40 H 1.08997 * 109.47293 * 59.99772 * 21 20 10 41 41 H 1.08000 * 120.01055 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1977 0.0000 4 6 3.5804 1.1991 0.0052 5 6 4.2733 0.0032 -0.0010 6 6 5.7803 0.0052 -0.0016 7 16 6.3843 0.0064 -1.7121 8 8 6.0863 1.2432 -2.3453 9 8 6.0896 -1.2309 -2.3458 10 7 8.0341 0.0093 -1.5677 11 6 8.7659 -1.2582 -1.5040 12 6 9.2470 -1.6304 -2.8829 13 1 9.0290 -0.9873 -3.7227 14 6 9.9654 -2.7919 -3.0721 15 7 10.3848 -3.1169 -4.2755 16 14 10.3431 -3.9038 -1.6194 17 1 9.2519 -4.8985 -1.4606 18 1 11.6267 -4.6112 -1.8581 19 1 10.4507 -3.0857 -0.3848 20 6 8.7620 1.2792 -1.5098 21 6 8.9988 1.6652 -0.0484 22 6 9.7309 2.9410 0.0097 23 7 10.2964 3.9243 0.0551 24 6 3.5824 -1.1964 -0.0009 25 9 4.2588 -2.3660 -0.0010 26 6 2.1977 -1.1967 -0.0005 27 1 -0.3633 -0.0003 1.0277 28 1 -0.3633 0.8903 -0.5135 29 1 -0.3633 -0.8897 -0.5142 30 1 1.6575 2.1326 0.0004 31 1 4.1191 2.1352 0.0098 32 1 6.1450 -0.8844 0.5120 33 1 6.1427 0.8956 0.5123 34 1 9.6215 -1.1506 -0.8374 35 1 8.1069 -2.0397 -1.1259 36 1 10.8906 -3.9339 -4.4086 37 1 9.7208 1.1718 -2.0171 38 1 8.1763 2.0565 -2.0006 39 1 8.0401 1.7726 0.4589 40 1 9.5845 0.8880 0.4424 41 1 1.6576 -2.1320 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192021159.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:53 Heat of formation + Delta-G solvation = -88.550224 kcal Electronic energy + Delta-G solvation = -27508.617295 eV Core-core repulsion = 23429.441587 eV Total energy + Delta-G solvation = -4079.175708 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.99580 -40.30677 -38.50667 -38.11157 -37.15162 -36.85172 -35.06767 -34.63243 -32.28917 -31.60142 -30.63507 -29.26324 -26.35657 -25.11224 -23.93765 -23.52556 -22.19293 -19.78496 -19.16586 -18.71526 -18.35413 -18.07984 -17.81398 -17.50572 -17.13396 -16.77958 -16.37327 -16.18099 -15.82305 -15.42259 -15.09064 -14.89765 -14.56377 -14.48315 -14.44575 -14.18538 -13.99267 -13.91798 -13.70259 -13.51005 -13.34702 -13.10208 -13.05931 -12.94867 -12.86600 -12.81211 -12.57685 -12.53608 -12.20255 -12.10929 -12.03163 -11.86143 -11.65965 -11.58199 -10.71461 -9.98100 -9.84583 -9.48119 -8.21791 -6.26813 -0.89430 0.12593 0.18326 1.41621 1.47471 1.53341 1.61545 1.87124 1.91312 2.41960 2.49144 2.93413 3.03763 3.14757 3.17575 3.24432 3.28063 3.64787 3.88234 3.91734 4.01663 4.12870 4.25250 4.29000 4.38157 4.48525 4.62015 4.66966 4.79622 4.87642 4.91614 4.97200 5.01275 5.07764 5.15750 5.21849 5.28739 5.37098 5.48941 5.56516 5.72291 5.86775 6.36725 6.63897 6.77513 7.35550 8.96219 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.010487 B = 0.004359 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.349482 B = 6422.270630 C = 8219.432257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.050 4.050 3 C -0.130 4.130 4 C -0.078 4.078 5 C -0.154 4.154 6 C -0.566 4.566 7 S 2.584 3.416 8 O -0.981 6.981 9 O -0.987 6.987 10 N -0.980 5.980 11 C 0.226 3.774 12 C -0.537 4.537 13 H 0.024 0.976 14 C 0.002 3.998 15 N -0.955 5.955 16 Si 0.938 3.062 17 H -0.274 1.274 18 H -0.287 1.287 19 H -0.210 1.210 20 C 0.114 3.886 21 C -0.046 4.046 22 C 0.244 3.756 23 N -0.493 5.493 24 C 0.085 3.915 25 F -0.145 7.145 26 C -0.168 4.168 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.168 0.832 31 H 0.167 0.833 32 H 0.159 0.841 33 H 0.194 0.806 34 H 0.076 0.924 35 H 0.040 0.960 36 H 0.265 0.735 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.145 0.855 40 H 0.146 0.854 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.322 8.101 18.272 27.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.051 4.051 3 C -0.148 4.148 4 C -0.097 4.097 5 C -0.157 4.157 6 C -0.696 4.696 7 S 2.682 3.318 8 O -0.972 6.972 9 O -0.977 6.977 10 N -0.816 5.816 11 C 0.102 3.898 12 C -0.576 4.576 13 H 0.042 0.958 14 C -0.195 4.195 15 N -0.596 5.596 16 Si 0.760 3.240 17 H -0.200 1.200 18 H -0.213 1.213 19 H -0.132 1.132 20 C -0.013 4.013 21 C -0.087 4.087 22 C -0.074 4.074 23 N -0.171 5.171 24 C 0.065 3.935 25 F -0.123 7.123 26 C -0.187 4.187 27 H 0.111 0.889 28 H 0.106 0.894 29 H 0.093 0.907 30 H 0.185 0.815 31 H 0.184 0.816 32 H 0.177 0.823 33 H 0.212 0.788 34 H 0.093 0.907 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.101 0.899 38 H 0.112 0.888 39 H 0.163 0.837 40 H 0.163 0.837 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -17.765 9.399 17.400 26.584 hybrid contribution 0.754 -1.708 -0.021 1.867 sum -17.011 7.691 17.380 25.506 Atomic orbital electron populations 1.20949 0.87778 1.04459 1.04101 1.20300 0.98377 0.91616 0.94771 1.21581 0.93563 0.99401 1.00251 1.21482 0.95403 0.97105 0.95742 1.19239 0.92975 0.93703 1.09774 1.29559 1.00335 1.15981 1.23723 1.05721 0.73682 0.73231 0.79170 1.93493 1.83987 1.45767 1.73921 1.93591 1.83720 1.46498 1.73900 1.57091 1.23231 1.11955 1.89307 1.19399 0.93767 0.80947 0.95699 1.21739 1.33811 1.07102 0.94957 0.95779 1.25978 0.95228 0.99253 0.99044 1.70099 1.39315 1.25841 1.24325 0.85872 0.77583 0.79571 0.80990 1.19992 1.21252 1.13210 1.21245 0.99680 0.84643 0.95728 1.20052 1.02203 0.87542 0.98937 1.29231 0.92324 0.94129 0.91692 1.81215 1.11824 1.13990 1.10082 1.18061 0.91456 0.80901 1.03117 1.91515 1.80578 1.46514 1.93738 1.21342 0.91175 1.01278 1.04862 0.88940 0.89355 0.90672 0.81459 0.81591 0.82274 0.78814 0.90652 0.94170 0.92671 0.89855 0.88835 0.83718 0.83668 0.83091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 10.01 71.24 0.71 -0.24 16 2 C -0.05 -0.76 5.88 -19.87 -0.12 -0.87 16 3 C -0.13 -1.83 9.70 22.28 0.22 -1.61 16 4 C -0.08 -1.35 9.70 22.26 0.22 -1.13 16 5 C -0.15 -3.50 5.15 -19.82 -0.10 -3.60 16 6 C -0.57 -11.63 6.13 71.24 0.44 -11.19 16 7 S 2.58 88.53 5.36 -56.49 -0.30 88.23 16 8 O -0.98 -35.83 16.52 -127.65 -2.11 -37.94 16 9 O -0.99 -45.99 16.99 -127.65 -2.17 -48.16 16 10 N -0.98 -32.91 2.70 -519.86 -1.40 -34.32 16 11 C 0.23 9.16 4.08 85.64 0.35 9.51 16 12 C -0.54 -30.00 9.94 25.60 0.25 -29.75 16 13 H 0.02 1.55 8.06 -2.91 -0.02 1.53 16 14 C 0.00 0.10 5.47 84.66 0.46 0.57 16 15 N -0.95 -60.50 13.96 21.45 0.30 -60.20 16 16 Si 0.94 40.97 27.47 68.60 1.88 42.85 16 17 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 18 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 19 H -0.21 -7.34 6.54 99.48 0.65 -6.69 16 20 C 0.11 3.05 5.61 86.38 0.48 3.53 16 21 C -0.05 -0.72 6.03 28.79 0.17 -0.54 16 22 C 0.24 5.28 15.43 89.45 1.38 6.66 16 23 N -0.49 -13.98 18.53 20.00 0.37 -13.61 16 24 C 0.09 2.20 7.24 22.37 0.16 2.36 16 25 F -0.14 -4.45 16.48 44.97 0.74 -3.71 16 26 C -0.17 -3.40 9.68 22.31 0.22 -3.18 16 27 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.09 0.49 8.09 -2.38 -0.02 0.47 16 29 H 0.07 0.59 8.08 -2.39 -0.02 0.57 16 30 H 0.17 1.20 8.06 -2.91 -0.02 1.17 16 31 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 32 H 0.16 2.93 7.64 -2.39 -0.02 2.91 16 33 H 0.19 1.82 6.92 -2.39 -0.02 1.80 16 34 H 0.08 2.52 7.17 -2.38 -0.02 2.51 16 35 H 0.04 1.61 7.04 -2.39 -0.02 1.59 16 36 H 0.26 15.65 8.31 -92.70 -0.77 14.88 16 37 H 0.08 2.52 8.11 -2.39 -0.02 2.50 16 38 H 0.09 2.49 6.81 -2.39 -0.02 2.48 16 39 H 0.15 1.02 6.98 -2.39 -0.02 1.00 16 40 H 0.15 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -89.45 372.45 3.16 -86.29 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: 1.00 Total: 10.05 kcal Atomic # 6 Polarization: -34.33 SS G_CDS: 4.85 Total: -29.48 kcal Atomic # 7 Polarization: -107.39 SS G_CDS: -0.73 Total: -108.12 kcal Atomic # 8 Polarization: -81.82 SS G_CDS: -4.28 Total: -86.10 kcal Atomic # 9 Polarization: -4.45 SS G_CDS: 0.74 Total: -3.71 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 1.88 Total: 42.85 kcal Atomic # 16 Polarization: 88.53 SS G_CDS: -0.30 Total: 88.23 kcal Total: -89.45 3.16 -86.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192021159.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.256 kcal (2) G-P(sol) polarization free energy of solvation -89.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds