Wall clock time and date at job start Sat Apr 11 2020 05:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86810 * 119.99876 * 2 1 4 4 H 1.48499 * 109.47137 * 239.99936 * 3 2 1 5 5 H 1.48496 * 109.47053 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46625 * 120.00033 * 3 2 1 7 7 C 1.38804 * 120.00247 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00531 * 163.08586 * 7 2 1 9 9 N 1.36936 * 119.99782 * 343.08514 * 7 2 1 10 10 C 1.46927 * 120.63328 * 331.83092 * 9 7 2 11 11 C 1.53186 * 108.77479 * 233.58439 * 10 9 7 12 12 C 1.53043 * 109.31437 * 305.36434 * 11 10 9 13 13 C 1.53032 * 109.53877 * 61.36566 * 12 11 10 14 14 H 1.08998 * 109.50082 * 58.62072 * 13 12 11 15 15 C 1.52999 * 109.49995 * 178.68217 * 13 12 11 16 16 N 1.46499 * 109.47477 * 184.99769 * 15 13 12 17 17 C 1.34774 * 120.00141 * 179.97438 * 16 15 13 18 18 O 1.21576 * 120.00127 * 0.02562 * 17 16 15 19 19 C 1.47690 * 120.00243 * 180.02562 * 17 16 15 20 20 C 1.39662 * 120.15595 * 359.72366 * 19 17 16 21 21 C 1.37968 * 119.85883 * 179.72232 * 20 19 17 22 22 Cl 1.73605 * 119.90383 * 180.27543 * 21 20 19 23 23 C 1.38567 * 120.19447 * 0.55869 * 21 20 19 24 24 C 1.38188 * 120.32442 * 359.71847 * 23 21 20 25 25 C 1.38315 * 120.13537 * 359.97438 * 24 23 21 26 26 F 1.35096 * 120.09997 * 179.97438 * 25 24 23 27 27 C 1.46933 * 120.63148 * 151.54973 * 9 7 2 28 28 H 0.97001 * 120.00021 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.58266 * 353.37584 * 10 9 7 30 30 H 1.09008 * 109.58073 * 113.65523 * 10 9 7 31 31 H 1.08996 * 109.50109 * 65.31494 * 11 10 9 32 32 H 1.09007 * 109.49432 * 185.38366 * 11 10 9 33 33 H 1.09003 * 109.45993 * 181.38826 * 12 11 10 34 34 H 1.08997 * 109.45947 * 301.35843 * 12 11 10 35 35 H 1.08995 * 109.47509 * 305.00452 * 15 13 12 36 36 H 1.09002 * 109.47153 * 65.00113 * 15 13 12 37 37 H 0.97002 * 120.00054 * 0.02562 * 16 15 13 38 38 H 1.07992 * 120.06853 * 0.02562 * 20 19 17 39 39 H 1.07997 * 119.83281 * 179.69817 * 23 21 20 40 40 H 1.08001 * 119.93324 * 180.02562 * 24 23 21 41 41 H 1.08998 * 109.58974 * 246.20756 * 27 9 7 42 42 H 1.09003 * 109.58500 * 6.62795 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2225 -0.2716 9 7 1.3700 -2.3621 0.3461 10 6 0.2261 -2.3399 1.2679 11 6 0.4974 -3.3193 2.4141 12 6 0.8119 -4.7009 1.8358 13 6 2.0672 -4.6174 0.9645 14 1 2.9023 -4.2544 1.5635 15 6 2.3995 -6.0054 0.4133 16 7 3.6656 -5.9488 -0.3216 17 6 4.1605 -7.0620 -0.8982 18 8 3.5560 -8.1130 -0.8088 19 6 5.4371 -7.0050 -1.6386 20 6 6.1313 -5.7981 -1.7483 21 6 7.3262 -5.7532 -2.4366 22 17 8.1937 -4.2551 -2.5676 23 6 7.8330 -6.8989 -3.0286 24 6 7.1497 -8.0960 -2.9298 25 6 5.9538 -8.1579 -2.2377 26 9 5.2862 -9.3284 -2.1421 27 6 1.8101 -3.6522 -0.2026 28 1 -0.4850 0.8400 -0.0004 29 1 0.0993 -1.3343 1.6686 30 1 -0.6775 -2.6380 0.7359 31 1 1.3472 -2.9679 2.9994 32 1 -0.3830 -3.3838 3.0535 33 1 0.9812 -5.4055 2.6500 34 1 -0.0282 -5.0408 1.2302 35 1 2.4896 -6.7120 1.2383 36 1 1.6042 -6.3299 -0.2577 37 1 4.1481 -5.1103 -0.3927 38 1 5.7361 -4.9031 -1.2912 39 1 8.7664 -6.8560 -3.5701 40 1 7.5507 -8.9852 -3.3934 41 1 1.0336 -4.0574 -0.8513 42 1 2.7289 -3.5126 -0.7723 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266061763.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:11 Heat of formation + Delta-G solvation = -49.002058 kcal Electronic energy + Delta-G solvation = -26882.202973 eV Core-core repulsion = 22802.698496 eV Total energy + Delta-G solvation = -4079.504477 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.16016 -40.32173 -38.85161 -37.76176 -36.74532 -34.94232 -33.17472 -32.05733 -30.67182 -30.47683 -30.17148 -25.93613 -25.30923 -24.23596 -22.99066 -22.13838 -21.08662 -20.68567 -19.22563 -18.47248 -17.47286 -17.07556 -16.67648 -16.08451 -15.92395 -15.52427 -15.21885 -14.92036 -14.82547 -14.23542 -13.88383 -13.76667 -13.68246 -13.54298 -13.46290 -12.96613 -12.81950 -12.37696 -12.29931 -12.21211 -12.00380 -11.59925 -11.40647 -11.32870 -11.04061 -10.73602 -10.55027 -10.29338 -10.22345 -10.10371 -9.94217 -9.74309 -9.61389 -9.46114 -9.09727 -8.95041 -8.49471 -6.70794 -5.82438 -3.26093 0.19294 0.52221 1.66451 2.45411 3.00567 3.27266 3.35128 3.41587 3.41983 3.71953 4.09502 4.21419 4.44865 4.55745 4.66742 4.98471 5.02291 5.18120 5.25611 5.39255 5.41319 5.44667 5.46164 5.57359 5.58784 5.78915 5.89520 5.95097 6.13035 6.19140 6.26709 6.32848 6.39423 6.54956 6.66408 6.72792 6.82304 6.91659 7.36602 7.40554 7.64285 7.74703 8.07963 8.40992 9.17089 9.80396 10.37425 11.25694 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010675 B = 0.003271 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.354860 B = 8558.897712 C =10855.671303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.005 3.995 3 Si 0.901 3.099 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.257 4.257 8 H 0.064 0.936 9 N -0.591 5.591 10 C 0.169 3.831 11 C -0.141 4.141 12 C -0.099 4.099 13 C -0.119 4.119 14 H 0.074 0.926 15 C 0.127 3.873 16 N -0.714 5.714 17 C 0.556 3.444 18 O -0.526 6.526 19 C -0.157 4.157 20 C -0.048 4.048 21 C -0.056 4.056 22 Cl -0.051 7.051 23 C -0.057 4.057 24 C -0.153 4.153 25 C 0.164 3.836 26 F -0.109 7.109 27 C 0.153 3.847 28 H 0.255 0.745 29 H 0.086 0.914 30 H 0.018 0.982 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.047 0.953 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.402 0.598 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.152 0.848 41 H 0.020 0.980 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.779 -13.914 -3.248 20.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.194 4.194 3 Si 0.731 3.269 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.386 4.386 8 H 0.082 0.918 9 N -0.313 5.313 10 C 0.043 3.957 11 C -0.181 4.181 12 C -0.137 4.137 13 C -0.139 4.139 14 H 0.092 0.908 15 C 0.004 3.996 16 N -0.366 5.366 17 C 0.341 3.659 18 O -0.404 6.404 19 C -0.162 4.162 20 C -0.067 4.067 21 C -0.083 4.083 22 Cl -0.022 7.022 23 C -0.076 4.076 24 C -0.172 4.172 25 C 0.143 3.857 26 F -0.087 7.087 27 C 0.026 3.974 28 H 0.065 0.935 29 H 0.104 0.896 30 H 0.036 0.964 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.238 0.762 38 H 0.167 0.833 39 H 0.166 0.834 40 H 0.170 0.830 41 H 0.038 0.962 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 14.234 -14.396 -3.187 20.494 hybrid contribution 0.612 1.289 -0.073 1.429 sum 14.846 -13.107 -3.259 20.070 Atomic orbital electron populations 1.70025 1.05292 1.25675 1.53517 1.25044 0.95254 0.98410 1.00707 0.86392 0.78960 0.83409 0.78139 1.20851 1.21608 1.20998 1.19107 0.92457 0.84825 1.42216 0.91793 1.44038 1.36005 1.01346 1.49931 1.20798 0.88534 0.98310 0.88047 1.22165 1.00133 0.95924 0.99828 1.21334 0.96657 0.97799 0.97949 1.22053 0.98985 0.93428 0.99472 0.90761 1.21542 0.84260 0.98323 0.95509 1.45976 1.25005 1.11297 1.54335 1.17829 0.84241 0.84380 0.79416 1.90847 1.60021 1.29390 1.60106 1.20089 0.98181 0.93327 1.04558 1.21198 0.92392 0.97371 0.95742 1.20815 0.95326 0.88941 1.03249 1.98417 1.75643 1.31238 1.96942 1.21100 0.99871 0.90009 0.96662 1.21117 0.94402 0.99745 1.01908 1.17745 0.90759 0.81292 0.95936 1.91623 1.79322 1.44217 1.93541 1.20991 0.97476 0.86917 0.91970 0.93530 0.89580 0.96416 0.92736 0.93149 0.93386 0.92416 0.91617 0.91207 0.76161 0.83271 0.83375 0.82999 0.96226 0.93248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.67 11.20 55.49 0.62 -25.05 16 2 C 0.00 0.13 4.92 -17.43 -0.09 0.04 16 3 Si 0.90 21.14 29.59 -169.99 -5.03 16.12 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.26 -6.77 9.58 -15.06 -0.14 -6.91 16 8 H 0.06 1.63 7.89 -52.48 -0.41 1.22 16 9 N -0.59 -14.17 2.99 -172.05 -0.51 -14.68 16 10 C 0.17 3.91 5.30 -3.71 -0.02 3.89 16 11 C -0.14 -2.59 6.08 -26.61 -0.16 -2.75 16 12 C -0.10 -1.58 5.16 -26.69 -0.14 -1.72 16 13 C -0.12 -1.88 2.38 -90.28 -0.22 -2.09 16 14 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 15 C 0.13 1.80 5.06 -4.04 -0.02 1.78 16 16 N -0.71 -9.36 5.28 -61.30 -0.32 -9.68 16 17 C 0.56 7.92 7.77 -12.40 -0.10 7.82 16 18 O -0.53 -9.30 15.34 5.30 0.08 -9.22 16 19 C -0.16 -1.83 5.88 -104.91 -0.62 -2.45 16 20 C -0.05 -0.46 9.32 -39.15 -0.36 -0.83 16 21 C -0.06 -0.49 6.31 -39.56 -0.25 -0.74 16 22 Cl -0.05 -0.45 28.95 -51.86 -1.50 -1.96 16 23 C -0.06 -0.40 9.82 -39.48 -0.39 -0.79 16 24 C -0.15 -1.17 10.01 -39.57 -0.40 -1.56 16 25 C 0.16 1.80 7.28 -38.96 -0.28 1.52 16 26 F -0.11 -1.45 15.55 2.25 0.04 -1.42 16 27 C 0.15 2.99 5.63 -3.48 -0.02 2.97 16 28 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.09 2.25 6.06 -51.93 -0.31 1.93 16 30 H 0.02 0.44 8.14 -51.92 -0.42 0.01 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.05 0.84 8.14 -51.92 -0.42 0.41 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.40 4.63 5.75 -40.82 -0.23 4.39 16 38 H 0.15 1.30 6.40 -52.49 -0.34 0.96 16 39 H 0.15 0.64 8.06 -52.49 -0.42 0.22 16 40 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.05 0.91 7.16 -51.93 -0.37 0.54 16 LS Contribution 361.69 15.07 5.45 5.45 Total: -1.00 -31.26 361.69 -9.84 -41.10 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -5.46 Total: 1.15 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -3.20 Total: -1.81 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: -0.22 Total: -49.41 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.08 Total: -9.22 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.12 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.50 Total: -1.96 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.26 -9.84 -41.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266061763.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.900 kcal (2) G-P(sol) polarization free energy of solvation -31.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds