Wall clock time and date at job start Sat Apr 11 2020 05:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86810 * 119.99876 * 2 1 4 4 H 1.48499 * 109.47137 * 239.99936 * 3 2 1 5 5 H 1.48496 * 109.47053 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46625 * 120.00033 * 3 2 1 7 7 C 1.38804 * 120.00247 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00531 * 163.08586 * 7 2 1 9 9 N 1.36936 * 119.99782 * 343.08514 * 7 2 1 10 10 C 1.46927 * 120.63328 * 331.83092 * 9 7 2 11 11 C 1.53186 * 108.77479 * 233.58439 * 10 9 7 12 12 C 1.53043 * 109.31437 * 305.36434 * 11 10 9 13 13 C 1.53032 * 109.53877 * 61.36566 * 12 11 10 14 14 H 1.08998 * 109.50082 * 58.62072 * 13 12 11 15 15 C 1.52999 * 109.49995 * 178.68217 * 13 12 11 16 16 N 1.46499 * 109.47477 * 184.99769 * 15 13 12 17 17 C 1.34774 * 120.00141 * 179.97438 * 16 15 13 18 18 O 1.21576 * 120.00127 * 0.02562 * 17 16 15 19 19 C 1.47690 * 120.00243 * 180.02562 * 17 16 15 20 20 C 1.39662 * 120.15595 * 359.72366 * 19 17 16 21 21 C 1.37968 * 119.85883 * 179.72232 * 20 19 17 22 22 Cl 1.73605 * 119.90383 * 180.27543 * 21 20 19 23 23 C 1.38567 * 120.19447 * 0.55869 * 21 20 19 24 24 C 1.38188 * 120.32442 * 359.71847 * 23 21 20 25 25 C 1.38315 * 120.13537 * 359.97438 * 24 23 21 26 26 F 1.35096 * 120.09997 * 179.97438 * 25 24 23 27 27 C 1.46933 * 120.63148 * 151.54973 * 9 7 2 28 28 H 0.97001 * 120.00021 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.58266 * 353.37584 * 10 9 7 30 30 H 1.09008 * 109.58073 * 113.65523 * 10 9 7 31 31 H 1.08996 * 109.50109 * 65.31494 * 11 10 9 32 32 H 1.09007 * 109.49432 * 185.38366 * 11 10 9 33 33 H 1.09003 * 109.45993 * 181.38826 * 12 11 10 34 34 H 1.08997 * 109.45947 * 301.35843 * 12 11 10 35 35 H 1.08995 * 109.47509 * 305.00452 * 15 13 12 36 36 H 1.09002 * 109.47153 * 65.00113 * 15 13 12 37 37 H 0.97002 * 120.00054 * 0.02562 * 16 15 13 38 38 H 1.07992 * 120.06853 * 0.02562 * 20 19 17 39 39 H 1.07997 * 119.83281 * 179.69817 * 23 21 20 40 40 H 1.08001 * 119.93324 * 180.02562 * 24 23 21 41 41 H 1.08998 * 109.58974 * 246.20756 * 27 9 7 42 42 H 1.09003 * 109.58500 * 6.62795 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2225 -0.2716 9 7 1.3700 -2.3621 0.3461 10 6 0.2261 -2.3399 1.2679 11 6 0.4974 -3.3193 2.4141 12 6 0.8119 -4.7009 1.8358 13 6 2.0672 -4.6174 0.9645 14 1 2.9023 -4.2544 1.5635 15 6 2.3995 -6.0054 0.4133 16 7 3.6656 -5.9488 -0.3216 17 6 4.1605 -7.0620 -0.8982 18 8 3.5560 -8.1130 -0.8088 19 6 5.4371 -7.0050 -1.6386 20 6 6.1313 -5.7981 -1.7483 21 6 7.3262 -5.7532 -2.4366 22 17 8.1937 -4.2551 -2.5676 23 6 7.8330 -6.8989 -3.0286 24 6 7.1497 -8.0960 -2.9298 25 6 5.9538 -8.1579 -2.2377 26 9 5.2862 -9.3284 -2.1421 27 6 1.8101 -3.6522 -0.2026 28 1 -0.4850 0.8400 -0.0004 29 1 0.0993 -1.3343 1.6686 30 1 -0.6775 -2.6380 0.7359 31 1 1.3472 -2.9679 2.9994 32 1 -0.3830 -3.3838 3.0535 33 1 0.9812 -5.4055 2.6500 34 1 -0.0282 -5.0408 1.2302 35 1 2.4896 -6.7120 1.2383 36 1 1.6042 -6.3299 -0.2577 37 1 4.1481 -5.1103 -0.3927 38 1 5.7361 -4.9031 -1.2912 39 1 8.7664 -6.8560 -3.5701 40 1 7.5507 -8.9852 -3.3934 41 1 1.0336 -4.0574 -0.8513 42 1 2.7289 -3.5126 -0.7723 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266061763.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:10 Heat of formation + Delta-G solvation = -66.751149 kcal Electronic energy + Delta-G solvation = -26882.972631 eV Core-core repulsion = 22802.698496 eV Total energy + Delta-G solvation = -4080.274135 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.04125 -41.30849 -39.81374 -39.18583 -37.44729 -36.34579 -34.76962 -33.03493 -32.28830 -31.56309 -31.37008 -27.32799 -27.05003 -25.14032 -23.86951 -23.73053 -22.51692 -21.77749 -20.70160 -19.41918 -18.62420 -18.29228 -17.88022 -17.02958 -16.88462 -16.75551 -16.49856 -16.36569 -15.77592 -15.65274 -15.39231 -15.03563 -14.71287 -14.55376 -14.49174 -14.33340 -14.00690 -13.74724 -13.67468 -13.61486 -13.02039 -12.85501 -12.73001 -12.47824 -12.34402 -12.30006 -12.10966 -11.98164 -11.83075 -11.58442 -11.40449 -11.12340 -11.03323 -10.52132 -10.48437 -10.15020 -9.74308 -8.66620 -7.85696 -5.32014 -0.57334 -0.17224 0.97702 1.48166 1.50555 1.56833 1.57571 1.98352 2.40818 2.52092 2.97675 3.29319 3.34954 3.47696 3.60774 3.87016 3.93785 3.98108 3.99459 4.06602 4.29040 4.40772 4.50849 4.56263 4.60313 4.71990 4.75857 4.83980 4.86483 4.89015 4.94024 5.00496 5.10836 5.19015 5.31255 5.35191 5.43419 5.44693 5.57753 5.67660 5.79338 6.34308 6.40525 7.01113 7.16049 7.87187 8.39538 9.20345 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010675 B = 0.003271 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.354860 B = 8558.897712 C =10855.671303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.050 4.050 3 Si 0.964 3.036 4 H -0.274 1.274 5 H -0.298 1.298 6 H -0.277 1.277 7 C -0.263 4.263 8 H 0.072 0.928 9 N -0.609 5.609 10 C 0.172 3.828 11 C -0.129 4.129 12 C -0.097 4.097 13 C -0.101 4.101 14 H 0.080 0.920 15 C 0.137 3.863 16 N -0.709 5.709 17 C 0.554 3.446 18 O -0.567 6.567 19 C -0.175 4.175 20 C -0.048 4.048 21 C -0.060 4.060 22 Cl -0.051 7.051 23 C -0.041 4.041 24 C -0.137 4.137 25 C 0.141 3.859 26 F -0.129 7.129 27 C 0.151 3.849 28 H 0.249 0.751 29 H 0.051 0.949 30 H -0.008 1.008 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.055 0.945 35 H 0.076 0.924 36 H 0.060 0.940 37 H 0.410 0.590 38 H 0.155 0.845 39 H 0.183 0.817 40 H 0.183 0.817 41 H 0.006 0.994 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.563 -14.701 -3.372 23.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.246 4.246 3 Si 0.793 3.207 4 H -0.200 1.200 5 H -0.224 1.224 6 H -0.203 1.203 7 C -0.393 4.393 8 H 0.090 0.910 9 N -0.332 5.332 10 C 0.047 3.953 11 C -0.168 4.168 12 C -0.135 4.135 13 C -0.121 4.121 14 H 0.098 0.902 15 C 0.013 3.987 16 N -0.361 5.361 17 C 0.342 3.658 18 O -0.448 6.448 19 C -0.180 4.180 20 C -0.068 4.068 21 C -0.087 4.087 22 Cl -0.022 7.022 23 C -0.059 4.059 24 C -0.156 4.156 25 C 0.120 3.880 26 F -0.107 7.107 27 C 0.026 3.974 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.010 0.990 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.248 0.752 38 H 0.172 0.828 39 H 0.200 0.800 40 H 0.201 0.799 41 H 0.024 0.976 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 17.051 -15.185 -3.308 23.071 hybrid contribution -0.203 1.524 -0.103 1.541 sum 16.848 -13.661 -3.412 21.957 Atomic orbital electron populations 1.70192 1.06790 1.25834 1.55436 1.25798 0.95941 1.01526 1.01292 0.85387 0.77587 0.79327 0.78438 1.19965 1.22414 1.20281 1.19516 0.92966 0.85871 1.40915 0.91042 1.44309 1.35955 1.02284 1.50612 1.20634 0.87662 0.97778 0.89247 1.21991 1.00979 0.95876 0.97993 1.21335 0.96469 0.96839 0.98868 1.21809 0.99256 0.93192 0.97836 0.90212 1.21359 0.84515 0.97158 0.95679 1.45911 1.24624 1.11593 1.53931 1.18222 0.84835 0.83760 0.78977 1.90817 1.61432 1.30768 1.61776 1.19906 0.97630 0.94552 1.05886 1.21212 0.92795 0.96789 0.95992 1.20945 0.94996 0.89545 1.03179 1.98424 1.75457 1.31407 1.96912 1.21501 1.00453 0.88798 0.95159 1.21431 0.92670 1.01140 1.00341 1.18147 0.92047 0.80532 0.97244 1.91572 1.80017 1.45218 1.93874 1.21123 0.97133 0.85835 0.93348 0.94226 0.93043 0.99015 0.92740 0.91283 0.90084 0.92662 0.90534 0.92189 0.75200 0.82796 0.79983 0.79945 0.97627 0.92455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.07 11.20 21.65 0.24 -54.83 16 2 C -0.05 -2.75 4.92 84.86 0.42 -2.33 16 3 Si 0.96 43.85 29.59 68.60 2.03 45.88 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 6 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.26 -13.92 9.58 84.03 0.81 -13.12 16 8 H 0.07 3.60 7.89 -2.91 -0.02 3.58 16 9 N -0.61 -29.47 2.99 -698.24 -2.09 -31.55 16 10 C 0.17 8.18 5.30 86.36 0.46 8.64 16 11 C -0.13 -4.61 6.08 30.67 0.19 -4.43 16 12 C -0.10 -2.91 5.16 30.62 0.16 -2.75 16 13 C -0.10 -3.03 2.38 -10.57 -0.03 -3.06 16 14 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 15 C 0.14 3.70 5.06 86.38 0.44 4.14 16 16 N -0.71 -17.99 5.28 -466.13 -2.46 -20.45 16 17 C 0.55 15.70 7.77 86.74 0.67 16.37 16 18 O -0.57 -20.29 15.34 -3.95 -0.06 -20.36 16 19 C -0.18 -3.95 5.88 -20.05 -0.12 -4.07 16 20 C -0.05 -0.87 9.32 22.55 0.21 -0.66 16 21 C -0.06 -0.88 6.31 22.28 0.14 -0.74 16 22 Cl -0.05 -0.78 28.95 -2.72 -0.08 -0.86 16 23 C -0.04 -0.42 9.82 22.34 0.22 -0.20 16 24 C -0.14 -1.69 10.01 22.28 0.22 -1.47 16 25 C 0.14 2.96 7.28 22.67 0.17 3.12 16 26 F -0.13 -3.41 15.55 44.97 0.70 -2.72 16 27 C 0.15 5.86 5.63 86.51 0.49 6.35 16 28 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 29 H 0.05 2.78 6.06 -2.39 -0.01 2.77 16 30 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 31 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 33 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.41 8.99 5.75 -92.71 -0.53 8.45 16 38 H 0.15 2.48 6.40 -2.91 -0.02 2.46 16 39 H 0.18 0.68 8.06 -2.91 -0.02 0.66 16 40 H 0.18 1.10 8.06 -2.91 -0.02 1.08 16 41 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 42 H 0.06 2.09 7.16 -2.39 -0.02 2.07 16 Total: -1.00 -69.99 361.69 3.24 -66.74 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 0.52 Total: 12.33 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: 4.44 Total: 5.80 kcal Atomic # 7 Polarization: -102.52 SS G_CDS: -4.31 Total: -106.83 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.06 Total: -20.36 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.70 Total: -2.72 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -0.08 Total: -0.86 kcal Total: -69.99 3.24 -66.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266061763.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.007 kcal (2) G-P(sol) polarization free energy of solvation -69.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds