Wall clock time and date at job start Sat Apr 11 2020 05:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86810 * 119.99876 * 2 1 4 4 H 1.48498 * 109.46844 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47269 * 300.00096 * 3 2 1 6 6 H 1.48497 * 109.46750 * 59.99866 * 3 2 1 7 7 C 1.38804 * 120.00247 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00045 * 163.07530 * 7 2 1 9 9 N 1.36942 * 120.00133 * 343.07682 * 7 2 1 10 10 C 1.46930 * 120.62512 * 331.83769 * 9 7 2 11 11 C 1.53197 * 108.77229 * 233.58453 * 10 9 7 12 12 C 1.53043 * 109.31048 * 305.36329 * 11 10 9 13 13 C 1.53047 * 109.53907 * 61.36745 * 12 11 10 14 14 H 1.09002 * 109.49337 * 58.58454 * 13 12 11 15 15 C 1.52994 * 109.50007 * 178.64951 * 13 12 11 16 16 N 1.46499 * 109.47177 * 185.00178 * 15 13 12 17 17 C 1.34779 * 119.99826 * 180.02562 * 16 15 13 18 18 O 1.21575 * 119.99985 * 359.97438 * 17 16 15 19 19 C 1.47651 * 119.99497 * 179.97438 * 17 16 15 20 20 C 1.39691 * 120.13452 * 359.72160 * 19 17 16 21 21 C 1.37775 * 119.89698 * 179.76158 * 20 19 17 22 22 C 1.38722 * 120.15414 * 0.51962 * 21 20 19 23 23 F 1.35096 * 119.87050 * 179.76172 * 22 21 20 24 24 C 1.38567 * 120.26171 * 359.73487 * 22 21 20 25 25 C 1.38037 * 120.10103 * 359.97438 * 24 22 21 26 26 Cl 1.73602 * 120.07441 * 180.02562 * 25 24 22 27 27 C 1.46921 * 120.63179 * 151.55434 * 9 7 2 28 28 H 0.97001 * 120.00021 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.58735 * 353.36722 * 10 9 7 30 30 H 1.08997 * 109.58489 * 113.65402 * 10 9 7 31 31 H 1.08991 * 109.49849 * 65.31276 * 11 10 9 32 32 H 1.08996 * 109.49925 * 185.38719 * 11 10 9 33 33 H 1.08994 * 109.45907 * 181.38612 * 12 11 10 34 34 H 1.08997 * 109.46426 * 301.36111 * 12 11 10 35 35 H 1.09006 * 109.47096 * 305.00374 * 15 13 12 36 36 H 1.08998 * 109.47035 * 64.99623 * 15 13 12 37 37 H 0.97000 * 120.00045 * 359.97438 * 16 15 13 38 38 H 1.08009 * 120.05090 * 0.02822 * 20 19 17 39 39 H 1.07999 * 119.92588 * 180.27685 * 21 20 19 40 40 H 1.08000 * 119.95083 * 179.97438 * 24 22 21 41 41 H 1.09006 * 109.58770 * 246.20234 * 27 9 7 42 42 H 1.08999 * 109.58848 * 6.62647 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2224 -0.2717 9 7 1.3701 -2.3622 0.3463 10 6 0.2262 -2.3398 1.2681 11 6 0.4977 -3.3190 2.4146 12 6 0.8120 -4.7007 1.8364 13 6 2.0674 -4.6173 0.9649 14 1 2.9024 -4.2536 1.5637 15 6 2.4001 -6.0055 0.4145 16 7 3.6661 -5.9489 -0.3204 17 6 4.1608 -7.0621 -0.8972 18 8 3.5567 -8.1132 -0.8072 19 6 5.4365 -7.0048 -1.6384 20 6 6.1301 -5.7972 -1.7485 21 6 7.3225 -5.7504 -2.4371 22 6 7.8302 -6.8971 -3.0302 23 9 8.9975 -6.8436 -3.7081 24 6 7.1450 -8.0973 -2.9296 25 6 5.9524 -8.1576 -2.2371 26 17 5.0948 -9.6618 -2.1110 27 6 1.8102 -3.6521 -0.2023 28 1 -0.4850 0.8400 -0.0004 29 1 0.0995 -1.3341 1.6688 30 1 -0.6774 -2.6379 0.7364 31 1 1.3475 -2.9675 2.9996 32 1 -0.3826 -3.3835 3.0541 33 1 0.9814 -5.4051 2.6507 34 1 -0.0281 -5.0407 1.2309 35 1 2.4904 -6.7116 1.2401 36 1 1.6048 -6.3307 -0.2561 37 1 4.1480 -5.1101 -0.3925 38 1 5.7343 -4.9025 -1.2908 39 1 7.8613 -4.8180 -2.5186 40 1 7.5446 -8.9868 -3.3936 41 1 1.0336 -4.0575 -0.8509 42 1 2.7289 -3.5126 -0.7721 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266121466.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:17 Heat of formation + Delta-G solvation = -41.731326 kcal Electronic energy + Delta-G solvation = -26722.849550 eV Core-core repulsion = 22643.660356 eV Total energy + Delta-G solvation = -4079.189194 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.42689 -40.41327 -38.65624 -37.68394 -36.66155 -34.90284 -33.13275 -31.71638 -31.19112 -30.48684 -30.04532 -25.80608 -25.31225 -23.93266 -23.30061 -22.14506 -21.08864 -20.64060 -19.21672 -18.52436 -17.69938 -17.09893 -16.65924 -16.14627 -15.62526 -15.43311 -15.38009 -14.90152 -14.70133 -14.34494 -14.08557 -13.84930 -13.75522 -13.46785 -13.21937 -13.15095 -12.82843 -12.38103 -12.23142 -12.19938 -11.81832 -11.65795 -11.38292 -11.31272 -11.06031 -10.76699 -10.53292 -10.26625 -10.22054 -9.98464 -9.76522 -9.56000 -9.50241 -9.46127 -9.21930 -8.91852 -8.51790 -6.72236 -5.84164 -3.27840 0.18968 0.57357 1.76568 2.47587 3.07137 3.32330 3.34272 3.40269 3.41863 3.69164 4.13710 4.40969 4.41749 4.44341 4.67051 4.93213 5.03418 5.24494 5.28578 5.38988 5.39566 5.42204 5.56219 5.58042 5.58936 5.79142 5.90899 5.95372 6.14750 6.19198 6.27478 6.32757 6.42343 6.54285 6.65865 6.72363 6.81711 6.91246 7.35660 7.46223 7.63290 7.73319 8.14823 8.39241 9.15352 9.78848 10.35822 11.23901 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.012658 B = 0.002871 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.421592 B = 9749.543987 C =11660.866787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.004 3.996 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.255 4.255 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.169 3.831 11 C -0.141 4.141 12 C -0.099 4.099 13 C -0.118 4.118 14 H 0.073 0.927 15 C 0.128 3.872 16 N -0.717 5.717 17 C 0.551 3.449 18 O -0.518 6.518 19 C -0.137 4.137 20 C -0.043 4.043 21 C -0.156 4.156 22 C 0.135 3.865 23 F -0.128 7.128 24 C -0.160 4.160 25 C 0.039 3.961 26 Cl -0.017 7.017 27 C 0.154 3.846 28 H 0.254 0.746 29 H 0.086 0.914 30 H 0.018 0.982 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.047 0.953 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.401 0.599 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.152 0.848 41 H 0.020 0.980 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.070 -14.729 -2.398 19.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.195 4.195 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.385 4.385 8 H 0.083 0.917 9 N -0.314 5.314 10 C 0.043 3.957 11 C -0.180 4.180 12 C -0.138 4.138 13 C -0.139 4.139 14 H 0.092 0.908 15 C 0.005 3.995 16 N -0.369 5.369 17 C 0.337 3.663 18 O -0.395 6.395 19 C -0.141 4.141 20 C -0.062 4.062 21 C -0.175 4.175 22 C 0.115 3.885 23 F -0.107 7.107 24 C -0.179 4.179 25 C 0.011 3.989 26 Cl 0.013 6.987 27 C 0.027 3.973 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.036 0.964 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.237 0.763 38 H 0.167 0.833 39 H 0.168 0.832 40 H 0.169 0.831 41 H 0.038 0.962 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 12.456 -15.457 -2.344 19.989 hybrid contribution 0.820 1.261 -0.222 1.520 sum 13.276 -14.196 -2.566 19.605 Atomic orbital electron populations 1.70045 1.05294 1.25447 1.53659 1.25055 0.95267 0.98435 1.00766 0.86253 0.79320 0.84022 0.77323 1.20262 1.21714 1.21545 1.19183 0.92473 0.84808 1.42009 0.91723 1.44058 1.36013 1.01376 1.49937 1.20798 0.88539 0.98315 0.88059 1.22164 1.00124 0.95948 0.99813 1.21336 0.96700 0.97757 0.97957 1.22050 0.98917 0.93529 0.99422 0.90820 1.21504 0.84366 0.98154 0.95478 1.45989 1.25013 1.11328 1.54552 1.17908 0.84481 0.84370 0.79539 1.90871 1.59964 1.28996 1.59690 1.19944 0.97799 0.93203 1.03183 1.21250 0.92928 0.96868 0.95151 1.21222 0.97681 0.98428 1.00134 1.17692 0.82784 0.94136 0.93840 1.91552 1.44874 1.97043 1.77216 1.20967 0.95235 0.98524 1.03205 1.20703 0.92790 0.88811 0.96586 1.98441 1.75684 1.28402 1.96187 1.20988 0.97451 0.86891 0.91992 0.93633 0.89592 0.96415 0.92749 0.93165 0.93401 0.92438 0.91701 0.91296 0.76324 0.83290 0.83204 0.83066 0.96245 0.93255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.44 11.20 55.49 0.62 -24.82 16 2 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 3 Si 0.90 20.88 29.59 -169.99 -5.03 15.85 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.26 -6.64 9.58 -15.06 -0.14 -6.78 16 8 H 0.07 1.63 7.89 -52.49 -0.41 1.21 16 9 N -0.59 -13.97 2.99 -172.05 -0.51 -14.49 16 10 C 0.17 3.86 5.30 -3.71 -0.02 3.84 16 11 C -0.14 -2.56 6.08 -26.61 -0.16 -2.72 16 12 C -0.10 -1.56 5.17 -26.68 -0.14 -1.69 16 13 C -0.12 -1.82 2.38 -90.27 -0.22 -2.04 16 14 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 15 C 0.13 1.74 5.07 -4.05 -0.02 1.72 16 16 N -0.72 -8.85 5.28 -61.31 -0.32 -9.17 16 17 C 0.55 7.35 7.76 -12.42 -0.10 7.25 16 18 O -0.52 -8.35 13.96 5.30 0.07 -8.28 16 19 C -0.14 -1.52 5.88 -104.94 -0.62 -2.14 16 20 C -0.04 -0.37 9.53 -39.21 -0.37 -0.75 16 21 C -0.16 -1.23 10.01 -39.57 -0.40 -1.62 16 22 C 0.14 1.18 7.31 -39.28 -0.29 0.89 16 23 F -0.13 -1.16 17.26 2.25 0.04 -1.12 16 24 C -0.16 -1.42 9.79 -39.53 -0.39 -1.81 16 25 C 0.04 0.43 6.35 -39.08 -0.25 0.18 16 26 Cl -0.02 -0.20 26.02 -51.86 -1.35 -1.55 16 27 C 0.15 2.93 5.63 -3.49 -0.02 2.91 16 28 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.09 2.22 6.06 -51.93 -0.31 1.91 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.40 4.28 5.75 -40.82 -0.23 4.04 16 38 H 0.15 1.03 6.40 -52.48 -0.34 0.69 16 39 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.05 0.88 7.16 -51.93 -0.37 0.51 16 LS Contribution 359.33 15.07 5.42 5.42 Total: -1.00 -30.29 359.33 -9.73 -40.02 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -5.46 Total: 0.88 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -3.21 Total: -2.74 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: -0.22 Total: -48.48 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: 0.07 Total: -8.28 kcal Atomic # 9 Polarization: -1.16 SS G_CDS: 0.04 Total: -1.12 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -1.35 Total: -1.55 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.29 -9.73 -40.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266121466.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.712 kcal (2) G-P(sol) polarization free energy of solvation -30.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds