Wall clock time and date at job start Sat Apr 11 2020 05:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86810 * 119.99876 * 2 1 4 4 H 1.48498 * 109.46844 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47269 * 300.00096 * 3 2 1 6 6 H 1.48497 * 109.46750 * 59.99866 * 3 2 1 7 7 C 1.38804 * 120.00247 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00045 * 163.07530 * 7 2 1 9 9 N 1.36942 * 120.00133 * 343.07682 * 7 2 1 10 10 C 1.46930 * 120.62512 * 331.83769 * 9 7 2 11 11 C 1.53197 * 108.77229 * 233.58453 * 10 9 7 12 12 C 1.53043 * 109.31048 * 305.36329 * 11 10 9 13 13 C 1.53047 * 109.53907 * 61.36745 * 12 11 10 14 14 H 1.09002 * 109.49337 * 58.58454 * 13 12 11 15 15 C 1.52994 * 109.50007 * 178.64951 * 13 12 11 16 16 N 1.46499 * 109.47177 * 185.00178 * 15 13 12 17 17 C 1.34779 * 119.99826 * 180.02562 * 16 15 13 18 18 O 1.21575 * 119.99985 * 359.97438 * 17 16 15 19 19 C 1.47651 * 119.99497 * 179.97438 * 17 16 15 20 20 C 1.39691 * 120.13452 * 359.72160 * 19 17 16 21 21 C 1.37775 * 119.89698 * 179.76158 * 20 19 17 22 22 C 1.38722 * 120.15414 * 0.51962 * 21 20 19 23 23 F 1.35096 * 119.87050 * 179.76172 * 22 21 20 24 24 C 1.38567 * 120.26171 * 359.73487 * 22 21 20 25 25 C 1.38037 * 120.10103 * 359.97438 * 24 22 21 26 26 Cl 1.73602 * 120.07441 * 180.02562 * 25 24 22 27 27 C 1.46921 * 120.63179 * 151.55434 * 9 7 2 28 28 H 0.97001 * 120.00021 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.58735 * 353.36722 * 10 9 7 30 30 H 1.08997 * 109.58489 * 113.65402 * 10 9 7 31 31 H 1.08991 * 109.49849 * 65.31276 * 11 10 9 32 32 H 1.08996 * 109.49925 * 185.38719 * 11 10 9 33 33 H 1.08994 * 109.45907 * 181.38612 * 12 11 10 34 34 H 1.08997 * 109.46426 * 301.36111 * 12 11 10 35 35 H 1.09006 * 109.47096 * 305.00374 * 15 13 12 36 36 H 1.08998 * 109.47035 * 64.99623 * 15 13 12 37 37 H 0.97000 * 120.00045 * 359.97438 * 16 15 13 38 38 H 1.08009 * 120.05090 * 0.02822 * 20 19 17 39 39 H 1.07999 * 119.92588 * 180.27685 * 21 20 19 40 40 H 1.08000 * 119.95083 * 179.97438 * 24 22 21 41 41 H 1.09006 * 109.58770 * 246.20234 * 27 9 7 42 42 H 1.08999 * 109.58848 * 6.62647 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2224 -0.2717 9 7 1.3701 -2.3622 0.3463 10 6 0.2262 -2.3398 1.2681 11 6 0.4977 -3.3190 2.4146 12 6 0.8120 -4.7007 1.8364 13 6 2.0674 -4.6173 0.9649 14 1 2.9024 -4.2536 1.5637 15 6 2.4001 -6.0055 0.4145 16 7 3.6661 -5.9489 -0.3204 17 6 4.1608 -7.0621 -0.8972 18 8 3.5567 -8.1132 -0.8072 19 6 5.4365 -7.0048 -1.6384 20 6 6.1301 -5.7972 -1.7485 21 6 7.3225 -5.7504 -2.4371 22 6 7.8302 -6.8971 -3.0302 23 9 8.9975 -6.8436 -3.7081 24 6 7.1450 -8.0973 -2.9296 25 6 5.9524 -8.1576 -2.2371 26 17 5.0948 -9.6618 -2.1110 27 6 1.8102 -3.6521 -0.2023 28 1 -0.4850 0.8400 -0.0004 29 1 0.0995 -1.3341 1.6688 30 1 -0.6774 -2.6379 0.7364 31 1 1.3475 -2.9675 2.9996 32 1 -0.3826 -3.3835 3.0541 33 1 0.9814 -5.4051 2.6507 34 1 -0.0281 -5.0407 1.2309 35 1 2.4904 -6.7116 1.2401 36 1 1.6048 -6.3307 -0.2561 37 1 4.1480 -5.1101 -0.3925 38 1 5.7343 -4.9025 -1.2908 39 1 7.8613 -4.8180 -2.5186 40 1 7.5446 -8.9868 -3.3936 41 1 1.0336 -4.0575 -0.8509 42 1 2.7289 -3.5126 -0.7721 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266121466.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:16 Heat of formation + Delta-G solvation = -58.305285 kcal Electronic energy + Delta-G solvation = -26723.568251 eV Core-core repulsion = 22643.660356 eV Total energy + Delta-G solvation = -4079.907895 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.11743 -41.33151 -39.71036 -38.98738 -37.48771 -36.24273 -34.69857 -32.70595 -32.26037 -31.97185 -31.27325 -27.26478 -26.93047 -24.78784 -24.09463 -23.75750 -22.49260 -21.66518 -20.65600 -19.36323 -18.68089 -18.42979 -17.83919 -16.87398 -16.80687 -16.62965 -16.44413 -16.15720 -15.76755 -15.57612 -15.39031 -15.03553 -14.80211 -14.57932 -14.46045 -14.16093 -14.01579 -13.95215 -13.70024 -13.43782 -12.97558 -12.87741 -12.55763 -12.43784 -12.43281 -12.24228 -12.20363 -11.92462 -11.79699 -11.54402 -11.27073 -11.06241 -10.66494 -10.51356 -10.23225 -10.12568 -9.81177 -8.64565 -7.83839 -5.30030 -0.57835 -0.10787 0.96912 1.48664 1.51238 1.60727 1.63742 2.09973 2.49581 2.53645 2.99849 3.31555 3.46002 3.57149 3.65543 3.80077 3.96005 4.02726 4.04813 4.09963 4.21923 4.43909 4.55252 4.61762 4.66504 4.72675 4.80718 4.89326 4.91346 4.92084 4.95850 5.03875 5.14057 5.24917 5.36217 5.40465 5.47982 5.50982 5.60742 5.70219 5.81451 6.41853 6.49673 7.16363 7.17857 7.89453 8.41777 9.22440 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.012658 B = 0.002871 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.421592 B = 9749.543987 C =11660.866787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.053 4.053 3 Si 0.964 3.036 4 H -0.260 1.260 5 H -0.297 1.297 6 H -0.294 1.294 7 C -0.258 4.258 8 H 0.075 0.925 9 N -0.609 5.609 10 C 0.172 3.828 11 C -0.129 4.129 12 C -0.098 4.098 13 C -0.100 4.100 14 H 0.080 0.920 15 C 0.139 3.861 16 N -0.711 5.711 17 C 0.550 3.450 18 O -0.551 6.551 19 C -0.153 4.153 20 C -0.037 4.037 21 C -0.147 4.147 22 C 0.136 3.864 23 F -0.129 7.129 24 C -0.157 4.157 25 C 0.026 3.974 26 Cl -0.035 7.035 27 C 0.151 3.849 28 H 0.248 0.752 29 H 0.050 0.950 30 H -0.009 1.009 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.410 0.590 38 H 0.169 0.831 39 H 0.176 0.824 40 H 0.167 0.833 41 H 0.005 0.995 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.457 -14.987 -2.060 21.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.248 4.248 3 Si 0.793 3.207 4 H -0.184 1.184 5 H -0.224 1.224 6 H -0.221 1.221 7 C -0.388 4.388 8 H 0.093 0.907 9 N -0.332 5.332 10 C 0.046 3.954 11 C -0.168 4.168 12 C -0.136 4.136 13 C -0.121 4.121 14 H 0.099 0.901 15 C 0.015 3.985 16 N -0.363 5.363 17 C 0.337 3.663 18 O -0.431 6.431 19 C -0.157 4.157 20 C -0.056 4.056 21 C -0.165 4.165 22 C 0.116 3.884 23 F -0.107 7.107 24 C -0.176 4.176 25 C -0.002 4.002 26 Cl -0.005 7.005 27 C 0.026 3.974 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.009 0.991 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.248 0.752 38 H 0.186 0.814 39 H 0.194 0.806 40 H 0.184 0.816 41 H 0.023 0.977 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 14.882 -15.728 -2.007 21.746 hybrid contribution 0.114 1.330 -0.390 1.390 sum 14.996 -14.399 -2.397 20.927 Atomic orbital electron populations 1.70208 1.06854 1.25620 1.55736 1.25814 0.95939 1.01588 1.01498 0.85252 0.79010 0.80021 0.76444 1.18386 1.22391 1.22147 1.19610 0.93048 0.85766 1.40399 0.90716 1.44333 1.35896 1.02402 1.50575 1.20625 0.87716 0.97721 0.89292 1.21988 1.00923 0.95967 0.97966 1.21336 0.96626 0.96704 0.98891 1.21804 0.99087 0.93402 0.97765 0.90145 1.21289 0.84689 0.96855 0.95619 1.45896 1.24571 1.11680 1.54199 1.18228 0.84953 0.83893 0.79188 1.90854 1.61078 1.30156 1.60962 1.19878 0.97382 0.94361 1.04081 1.21439 0.92842 0.96490 0.94820 1.21502 0.97166 0.99122 0.98727 1.17794 0.82653 0.94316 0.93678 1.91559 1.44893 1.97039 1.77221 1.21088 0.94488 0.99436 1.02576 1.20810 0.93501 0.88204 0.97709 1.98431 1.76213 1.29521 1.96362 1.21135 0.97231 0.85689 0.93371 0.94331 0.93151 0.99132 0.92680 0.91487 0.90175 0.92802 0.90699 0.92363 0.75234 0.81407 0.80647 0.81593 0.97749 0.92098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.58 11.20 21.65 0.24 -54.34 16 2 C -0.05 -2.87 4.92 84.86 0.42 -2.45 16 3 Si 0.96 43.07 29.59 68.60 2.03 45.09 16 4 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 5 H -0.30 -13.44 7.11 99.48 0.71 -12.73 16 6 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 7 C -0.26 -13.33 9.58 84.03 0.81 -12.52 16 8 H 0.08 3.63 7.89 -2.91 -0.02 3.61 16 9 N -0.61 -28.71 2.99 -698.26 -2.09 -30.79 16 10 C 0.17 8.04 5.30 86.36 0.46 8.50 16 11 C -0.13 -4.52 6.08 30.67 0.19 -4.33 16 12 C -0.10 -2.83 5.17 30.62 0.16 -2.67 16 13 C -0.10 -2.86 2.38 -10.57 -0.03 -2.88 16 14 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 15 C 0.14 3.49 5.07 86.38 0.44 3.93 16 16 N -0.71 -16.08 5.28 -466.16 -2.46 -18.55 16 17 C 0.55 13.94 7.76 86.73 0.67 14.61 16 18 O -0.55 -17.45 13.96 -3.95 -0.06 -17.51 16 19 C -0.15 -3.14 5.88 -20.07 -0.12 -3.26 16 20 C -0.04 -0.54 9.53 22.51 0.21 -0.32 16 21 C -0.15 -1.83 10.01 22.28 0.22 -1.61 16 22 C 0.14 2.01 7.31 22.46 0.16 2.17 16 23 F -0.13 -1.99 17.26 44.97 0.78 -1.21 16 24 C -0.16 -2.51 9.79 22.30 0.22 -2.30 16 25 C 0.03 0.53 6.35 22.59 0.14 0.68 16 26 Cl -0.03 -0.82 26.02 -2.72 -0.07 -0.89 16 27 C 0.15 5.61 5.63 86.51 0.49 6.10 16 28 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 29 H 0.05 2.70 6.06 -2.39 -0.01 2.68 16 30 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 31 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.07 1.79 8.14 -2.38 -0.02 1.78 16 36 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.41 7.64 5.75 -92.71 -0.53 7.10 16 38 H 0.17 1.72 6.40 -2.91 -0.02 1.71 16 39 H 0.18 1.30 8.06 -2.91 -0.02 1.27 16 40 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 41 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 42 H 0.06 2.07 7.16 -2.39 -0.02 2.06 16 Total: -1.00 -66.79 359.33 3.34 -63.45 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 0.52 Total: 11.10 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: 4.44 Total: 3.64 kcal Atomic # 7 Polarization: -99.38 SS G_CDS: -4.31 Total: -103.68 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.06 Total: -17.51 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.78 Total: -1.21 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -0.07 Total: -0.89 kcal Total: -66.79 3.34 -63.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266121466.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.148 kcal (2) G-P(sol) polarization free energy of solvation -66.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds