Wall clock time and date at job start Sat Apr 11 2020 05:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99750 * 2 1 4 4 H 1.48496 * 109.47404 * 270.00561 * 3 2 1 5 5 H 1.48509 * 109.46800 * 30.00342 * 3 2 1 6 6 H 1.48502 * 109.47190 * 150.00243 * 3 2 1 7 7 C 1.38804 * 120.00554 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00222 * 197.35577 * 7 2 1 9 9 N 1.36944 * 119.99723 * 17.35018 * 7 2 1 10 10 C 1.46926 * 120.63025 * 27.68147 * 9 7 2 11 11 C 1.53196 * 108.77330 * 126.41169 * 10 9 7 12 12 C 1.53036 * 109.31153 * 54.63535 * 11 10 9 13 13 C 1.53040 * 109.52564 * 298.63618 * 12 11 10 14 14 H 1.08996 * 109.49977 * 301.40595 * 13 12 11 15 15 C 1.53006 * 109.49618 * 181.31217 * 13 12 11 16 16 N 1.46497 * 109.47016 * 174.99865 * 15 13 12 17 17 C 1.34779 * 119.99775 * 179.97438 * 16 15 13 18 18 O 1.21573 * 119.99889 * 0.02562 * 17 16 15 19 19 C 1.47634 * 120.00003 * 180.02562 * 17 16 15 20 20 C 1.39698 * 120.14856 * 359.72894 * 19 17 16 21 21 C 1.37801 * 119.88725 * 179.69977 * 20 19 17 22 22 C 1.38610 * 120.20385 * 0.59477 * 21 20 19 23 23 Cl 1.73597 * 119.84441 * 179.69859 * 22 21 20 24 24 C 1.38359 * 120.31093 * 359.67950 * 22 21 20 25 25 C 1.38249 * 120.10589 * 0.02562 * 24 22 21 26 26 F 1.35099 * 120.10514 * 180.02562 * 25 24 22 27 27 C 1.46928 * 120.63130 * 207.70078 * 9 7 2 28 28 H 0.96998 * 120.00355 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.58637 * 6.62167 * 10 9 7 30 30 H 1.09002 * 109.69767 * 246.26726 * 10 9 7 31 31 H 1.08999 * 109.49381 * 294.67945 * 11 10 9 32 32 H 1.08997 * 109.48976 * 174.58485 * 11 10 9 33 33 H 1.08997 * 109.46301 * 58.65646 * 12 11 10 34 34 H 1.09003 * 109.45735 * 178.62479 * 12 11 10 35 35 H 1.09000 * 109.47034 * 295.00342 * 15 13 12 36 36 H 1.09002 * 109.46784 * 55.00347 * 15 13 12 37 37 H 0.96994 * 120.00052 * 0.02562 * 16 15 13 38 38 H 1.07997 * 120.05683 * 359.97438 * 20 19 17 39 39 H 1.07993 * 119.89821 * 180.29477 * 21 20 19 40 40 H 1.07999 * 119.94867 * 180.02562 * 24 22 21 41 41 H 1.09002 * 109.58312 * 353.37150 * 27 9 7 42 42 H 1.08993 * 109.58721 * 113.65366 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4474 2.6527 0.7002 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0535 -1.2234 0.2785 9 7 1.3724 -2.3609 -0.3547 10 6 0.2278 -2.3340 -1.2756 11 6 0.5006 -3.3037 -2.4297 12 6 0.8185 -4.6890 -1.8624 13 6 2.0742 -4.6092 -0.9912 14 1 2.9080 -4.2391 -1.5877 15 6 2.4101 -6.0007 -0.4508 16 7 3.6765 -5.9466 0.2837 17 6 4.1738 -7.0628 0.8524 18 8 3.5717 -8.1145 0.7553 19 6 5.4497 -7.0083 1.5931 20 6 6.1470 -5.8026 1.7017 21 6 7.3343 -5.7565 2.3996 22 6 7.8450 -6.9052 2.9836 23 17 9.3455 -6.8382 3.8540 24 6 7.1642 -8.1050 2.8764 25 6 5.9689 -8.1646 2.1843 26 9 5.3039 -9.3360 2.0801 27 6 1.8192 -3.6547 0.1792 28 1 -0.4850 0.8400 0.0004 29 1 0.0985 -1.3255 -1.6684 30 1 -0.6757 -2.6391 -0.7477 31 1 1.3492 -2.9457 -3.0127 32 1 -0.3802 -3.3656 -3.0687 33 1 -0.0206 -5.0357 -1.2592 34 1 0.9891 -5.3868 -2.6822 35 1 1.6159 -6.3321 0.2181 36 1 2.5015 -6.7006 -1.2814 37 1 4.1567 -5.1074 0.3614 38 1 5.7540 -4.9073 1.2433 39 1 7.8711 -4.8236 2.4877 40 1 7.5672 -8.9963 3.3340 41 1 2.7401 -3.5176 0.7461 42 1 1.0480 -4.0678 0.8292 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266132958.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:20 Heat of formation + Delta-G solvation = -66.524154 kcal Electronic energy + Delta-G solvation = -26721.650920 eV Core-core repulsion = 22641.386628 eV Total energy + Delta-G solvation = -4080.264292 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.07442 -41.28639 -39.82215 -39.18978 -37.55471 -36.32792 -34.74100 -32.84131 -32.27408 -31.78960 -31.40615 -27.29653 -27.00064 -24.99339 -23.95790 -23.77146 -22.51338 -21.74923 -20.67251 -19.40931 -18.64184 -18.32831 -17.88982 -17.04285 -16.82246 -16.67722 -16.48149 -16.36219 -15.81830 -15.68155 -15.37011 -15.02318 -14.75284 -14.60534 -14.48294 -14.32457 -13.99811 -13.72751 -13.61542 -13.58837 -13.00790 -12.86103 -12.76147 -12.49880 -12.43959 -12.24136 -12.12094 -11.93416 -11.80753 -11.56816 -11.39624 -11.11263 -11.01885 -10.50894 -10.30949 -10.15947 -9.86216 -8.66242 -7.84016 -5.29690 -0.65238 -0.08704 0.83743 1.49942 1.51748 1.56251 1.59778 2.00462 2.43267 2.53702 2.99134 3.31107 3.44539 3.49152 3.62322 3.79294 3.90365 3.99519 4.02233 4.06830 4.28203 4.42098 4.53199 4.59092 4.65189 4.76481 4.78289 4.86632 4.88826 4.91248 4.93515 5.02019 5.12675 5.21302 5.33208 5.36850 5.42472 5.46400 5.59757 5.69506 5.80659 6.38862 6.42373 7.05766 7.17359 7.88930 8.41118 9.22390 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.011824 B = 0.002773 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.399379 B =10096.584212 C =12191.384628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.054 4.054 3 Si 0.965 3.035 4 H -0.287 1.287 5 H -0.301 1.301 6 H -0.262 1.262 7 C -0.259 4.259 8 H 0.076 0.924 9 N -0.609 5.609 10 C 0.172 3.828 11 C -0.130 4.130 12 C -0.098 4.098 13 C -0.100 4.100 14 H 0.082 0.918 15 C 0.137 3.863 16 N -0.706 5.706 17 C 0.553 3.447 18 O -0.571 6.571 19 C -0.182 4.182 20 C -0.035 4.035 21 C -0.118 4.118 22 C 0.015 3.985 23 Cl -0.040 7.040 24 C -0.154 4.154 25 C 0.149 3.851 26 F -0.128 7.128 27 C 0.151 3.849 28 H 0.248 0.752 29 H 0.051 0.949 30 H -0.009 1.009 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.080 0.920 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.413 0.587 38 H 0.170 0.830 39 H 0.176 0.824 40 H 0.168 0.832 41 H 0.061 0.939 42 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.368 -13.531 2.739 22.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.249 4.249 3 Si 0.794 3.206 4 H -0.214 1.214 5 H -0.228 1.228 6 H -0.187 1.187 7 C -0.389 4.389 8 H 0.094 0.906 9 N -0.332 5.332 10 C 0.046 3.954 11 C -0.169 4.169 12 C -0.136 4.136 13 C -0.120 4.120 14 H 0.100 0.900 15 C 0.013 3.987 16 N -0.358 5.358 17 C 0.341 3.659 18 O -0.451 6.451 19 C -0.186 4.186 20 C -0.054 4.054 21 C -0.136 4.136 22 C -0.012 4.012 23 Cl -0.011 7.011 24 C -0.173 4.173 25 C 0.128 3.872 26 F -0.106 7.106 27 C 0.026 3.974 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.009 0.991 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.251 0.749 38 H 0.187 0.813 39 H 0.193 0.807 40 H 0.185 0.815 41 H 0.079 0.921 42 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges 16.936 -14.158 2.751 22.245 hybrid contribution -0.110 1.117 0.280 1.156 sum 16.825 -13.041 3.031 21.502 Atomic orbital electron populations 1.70204 1.06866 1.25710 1.55670 1.25806 0.95938 1.01611 1.01520 0.85292 0.78298 0.79584 0.77442 1.21430 1.22832 1.18665 1.19596 0.93225 0.85807 1.40267 0.90615 1.44314 1.35764 1.02175 1.50909 1.20633 0.87713 0.97830 0.89238 1.21992 1.00959 0.95907 0.97999 1.21341 0.96567 0.96773 0.98930 1.21721 0.99219 0.93187 0.97873 0.89969 1.21342 0.84587 0.97109 0.95681 1.45859 1.24534 1.11377 1.54061 1.18248 0.84883 0.83785 0.78977 1.90818 1.61695 1.31002 1.61632 1.20170 0.97720 0.95190 1.05499 1.21481 0.92968 0.96157 0.94782 1.21411 0.96148 0.98891 0.97170 1.20970 0.89517 0.94388 0.96348 1.98421 1.29848 1.98608 1.74179 1.21077 0.93920 1.00037 1.02250 1.17707 0.91217 0.80920 0.97312 1.91575 1.79877 1.45288 1.93845 1.21036 0.97272 0.85689 0.93429 0.94316 0.93040 0.99124 0.92643 0.91438 0.92790 0.90151 0.92359 0.90671 0.74909 0.81253 0.80688 0.81460 0.92057 0.97800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.60 11.19 21.65 0.24 -54.36 16 2 C -0.05 -2.89 4.91 84.86 0.42 -2.47 16 3 Si 0.97 42.98 29.59 68.60 2.03 45.01 16 4 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 5 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 7 C -0.26 -13.34 9.58 84.03 0.81 -12.54 16 8 H 0.08 3.66 7.89 -2.91 -0.02 3.64 16 9 N -0.61 -28.69 2.99 -699.15 -2.09 -30.79 16 10 C 0.17 8.02 5.31 86.36 0.46 8.48 16 11 C -0.13 -4.53 6.08 30.67 0.19 -4.35 16 12 C -0.10 -2.87 5.17 30.62 0.16 -2.71 16 13 C -0.10 -2.87 2.37 -10.72 -0.03 -2.89 16 14 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 15 C 0.14 3.54 5.07 86.38 0.44 3.98 16 16 N -0.71 -16.60 5.28 -466.17 -2.46 -19.06 16 17 C 0.55 15.04 7.77 86.72 0.67 15.72 16 18 O -0.57 -20.22 15.34 -3.95 -0.06 -20.28 16 19 C -0.18 -3.90 5.88 -20.05 -0.12 -4.02 16 20 C -0.04 -0.51 9.54 22.52 0.21 -0.29 16 21 C -0.12 -1.40 9.81 22.26 0.22 -1.18 16 22 C 0.02 0.21 6.32 22.39 0.14 0.35 16 23 Cl -0.04 -0.48 28.95 -2.72 -0.08 -0.56 16 24 C -0.15 -2.46 9.79 22.30 0.22 -2.24 16 25 C 0.15 3.30 7.28 22.67 0.17 3.46 16 26 F -0.13 -3.54 15.55 44.97 0.70 -2.85 16 27 C 0.15 5.63 5.60 86.35 0.48 6.11 16 28 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 29 H 0.05 2.75 6.04 -2.39 -0.01 2.74 16 30 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 31 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.41 7.79 5.73 -92.71 -0.53 7.26 16 38 H 0.17 1.68 6.40 -2.91 -0.02 1.67 16 39 H 0.18 1.18 8.06 -2.91 -0.02 1.16 16 40 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 41 H 0.06 2.09 7.14 -2.39 -0.02 2.07 16 42 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 Total: -1.00 -69.06 361.58 3.23 -65.83 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 0.52 Total: 11.64 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: 4.43 Total: 5.41 kcal Atomic # 7 Polarization: -99.89 SS G_CDS: -4.31 Total: -104.21 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.06 Total: -20.28 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.70 Total: -2.85 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -0.08 Total: -0.56 kcal Total: -69.06 3.23 -65.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266132958.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.694 kcal (2) G-P(sol) polarization free energy of solvation -69.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds