Wall clock time and date at job start Sat Apr 11 2020 05:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86801 * 120.00100 * 2 1 4 4 H 1.48503 * 109.47456 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46993 * 299.99510 * 3 2 1 6 6 H 1.48491 * 109.47353 * 59.99185 * 3 2 1 7 7 C 1.38813 * 120.00390 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00250 * 163.06776 * 7 2 1 9 9 N 1.36937 * 119.99915 * 343.06978 * 7 2 1 10 10 C 1.46924 * 120.63088 * 331.84823 * 9 7 2 11 11 C 1.53197 * 108.77518 * 233.60785 * 10 9 7 12 12 C 1.53047 * 109.31055 * 305.36302 * 11 10 9 13 13 C 1.53035 * 109.53775 * 61.36381 * 12 11 10 14 14 H 1.08998 * 109.50104 * 58.61830 * 13 12 11 15 15 C 1.53007 * 109.49717 * 178.68426 * 13 12 11 16 16 N 1.46499 * 109.46876 * 184.93259 * 15 13 12 17 17 C 1.34777 * 119.99895 * 179.97438 * 16 15 13 18 18 O 1.21563 * 119.99836 * 0.02562 * 17 16 15 19 19 C 1.47768 * 120.00302 * 180.02562 * 17 16 15 20 20 C 1.39637 * 120.14345 * 359.72325 * 19 17 16 21 21 C 1.37898 * 119.91655 * 180.25409 * 20 19 17 22 22 C 1.38396 * 120.20657 * 0.04417 * 21 20 19 23 23 C 1.38464 * 120.29403 * 359.95470 * 22 21 20 24 24 F 1.35103 * 119.96100 * 179.97438 * 23 22 21 25 25 C 1.38384 * 120.07844 * 0.02584 * 23 22 21 26 26 Cl 1.73605 * 120.10123 * 180.02562 * 25 23 22 27 27 C 1.46930 * 120.60426 * 151.86226 * 9 7 2 28 28 H 0.97001 * 120.00437 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.59103 * 113.81954 * 10 9 7 30 30 H 1.09005 * 109.70339 * 353.45841 * 10 9 7 31 31 H 1.09001 * 109.49778 * 185.41333 * 11 10 9 32 32 H 1.08996 * 109.49778 * 65.31287 * 11 10 9 33 33 H 1.09000 * 109.45634 * 301.34314 * 12 11 10 34 34 H 1.08995 * 109.45040 * 181.38171 * 12 11 10 35 35 H 1.08998 * 109.47061 * 64.93823 * 15 13 12 36 36 H 1.08997 * 109.46739 * 304.93270 * 15 13 12 37 37 H 0.96995 * 120.00504 * 0.02562 * 16 15 13 38 38 H 1.08004 * 120.04008 * 0.27483 * 20 19 17 39 39 H 1.08004 * 119.89436 * 179.97438 * 21 20 19 40 40 H 1.08007 * 119.85267 * 179.97438 * 22 21 20 41 41 H 1.09004 * 109.62104 * 6.62629 * 27 9 7 42 42 H 1.09004 * 109.56480 * 246.19011 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8913 2.3965 1.2123 7 6 2.0102 -1.2021 0.0005 8 1 3.0551 -1.2225 -0.2718 9 7 1.3701 -2.3622 0.3464 10 6 0.2262 -2.3398 1.2681 11 6 0.4979 -3.3184 2.4151 12 6 0.8127 -4.7003 1.8374 13 6 2.0680 -4.6168 0.9661 14 1 2.9031 -4.2531 1.5648 15 6 2.4008 -6.0051 0.4156 16 7 3.6660 -5.9481 -0.3207 17 6 4.1611 -7.0613 -0.8970 18 8 3.5575 -8.1126 -0.8061 19 6 5.4375 -7.0040 -1.6392 20 6 6.1304 -5.7967 -1.7504 21 6 7.3185 -5.7475 -2.4486 22 6 7.8263 -6.8908 -3.0405 23 6 7.1464 -8.0925 -2.9357 24 9 7.6479 -9.2043 -3.5166 25 6 5.9532 -8.1557 -2.2375 26 17 5.1007 -9.6621 -2.1051 27 6 1.8149 -3.6527 -0.1973 28 1 -0.4851 0.8400 -0.0004 29 1 -0.6770 -2.6409 0.7371 30 1 0.0966 -1.3344 1.6687 31 1 -0.3827 -3.3833 3.0542 32 1 1.3475 -2.9664 3.0000 33 1 -0.0274 -5.0409 1.2323 34 1 0.9823 -5.4042 2.6522 35 1 1.6049 -6.3307 -0.2543 36 1 2.4923 -6.7109 1.2412 37 1 4.1477 -5.1093 -0.3929 38 1 5.7364 -4.9028 -1.2899 39 1 7.8539 -4.8134 -2.5348 40 1 8.7571 -6.8456 -3.5864 41 1 2.7360 -3.5135 -0.7634 42 1 1.0416 -4.0606 -0.8482 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267141546.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:29 Heat of formation + Delta-G solvation = -56.978736 kcal Electronic energy + Delta-G solvation = -26812.939482 eV Core-core repulsion = 22733.089111 eV Total energy + Delta-G solvation = -4079.850372 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.08448 -41.34061 -39.70538 -39.00230 -37.55281 -36.26767 -34.70838 -32.76062 -32.26459 -31.77972 -31.24995 -27.29890 -27.02588 -25.00094 -23.79767 -23.76653 -22.52314 -21.70895 -20.68039 -19.47835 -18.60601 -17.87067 -17.56622 -17.25386 -16.98027 -16.78395 -16.59935 -16.43826 -15.75162 -15.43482 -15.33229 -15.02829 -14.93862 -14.53693 -14.45487 -14.02635 -13.97713 -13.73005 -13.43305 -13.23604 -12.97221 -12.87312 -12.79861 -12.59417 -12.49410 -12.26194 -12.20446 -11.92049 -11.79813 -11.54812 -11.27849 -11.06912 -10.68193 -10.51287 -10.30003 -9.97722 -9.84099 -8.64725 -7.83432 -5.29469 -0.51637 -0.14816 0.96187 1.49461 1.51956 1.61560 1.68517 2.01591 2.51351 2.54233 2.97844 3.32104 3.45338 3.60535 3.69719 3.77797 4.00297 4.03957 4.07401 4.10716 4.32052 4.43165 4.55979 4.61149 4.66986 4.77268 4.79509 4.90451 4.93722 4.99221 5.03118 5.12719 5.13459 5.23872 5.35189 5.39045 5.47902 5.55684 5.60474 5.70275 5.81015 6.41787 6.46876 7.12869 7.18070 7.89560 8.42040 9.23129 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014962 B = 0.002765 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.004961 B =10125.492270 C =11698.919760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.054 4.054 3 Si 0.965 3.035 4 H -0.259 1.259 5 H -0.297 1.297 6 H -0.295 1.295 7 C -0.258 4.258 8 H 0.076 0.924 9 N -0.609 5.609 10 C 0.172 3.828 11 C -0.130 4.130 12 C -0.098 4.098 13 C -0.100 4.100 14 H 0.081 0.919 15 C 0.139 3.861 16 N -0.708 5.708 17 C 0.548 3.452 18 O -0.552 6.552 19 C -0.118 4.118 20 C -0.078 4.078 21 C -0.078 4.078 22 C -0.105 4.105 23 C 0.082 3.918 24 F -0.133 7.133 25 C -0.050 4.050 26 Cl -0.040 7.040 27 C 0.152 3.848 28 H 0.247 0.753 29 H -0.010 1.010 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.411 0.589 38 H 0.164 0.836 39 H 0.188 0.812 40 H 0.181 0.819 41 H 0.062 0.938 42 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.757 -12.908 -2.301 21.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.249 4.249 3 Si 0.794 3.206 4 H -0.183 1.183 5 H -0.224 1.224 6 H -0.222 1.222 7 C -0.388 4.388 8 H 0.094 0.906 9 N -0.332 5.332 10 C 0.047 3.953 11 C -0.169 4.169 12 C -0.136 4.136 13 C -0.120 4.120 14 H 0.099 0.901 15 C 0.015 3.985 16 N -0.361 5.361 17 C 0.335 3.665 18 O -0.431 6.431 19 C -0.122 4.122 20 C -0.097 4.097 21 C -0.096 4.096 22 C -0.123 4.123 23 C 0.062 3.938 24 F -0.112 7.112 25 C -0.079 4.079 26 Cl -0.010 7.010 27 C 0.026 3.974 28 H 0.057 0.943 29 H 0.008 0.992 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.249 0.751 38 H 0.182 0.818 39 H 0.205 0.795 40 H 0.199 0.801 41 H 0.080 0.920 42 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges 16.150 -13.699 -2.243 21.296 hybrid contribution -0.214 0.885 -0.302 0.960 sum 15.936 -12.814 -2.545 20.606 Atomic orbital electron populations 1.70206 1.06895 1.25627 1.55748 1.25825 0.95946 1.01642 1.01520 0.85236 0.79054 0.79937 0.76403 1.18253 1.22416 1.22221 1.19619 0.93082 0.85721 1.40370 0.90608 1.44314 1.35793 1.02336 1.50741 1.20620 0.87725 0.97717 0.89269 1.21995 1.00943 0.95925 0.97997 1.21337 0.96603 0.96759 0.98887 1.21727 0.99144 0.93319 0.97840 0.90054 1.21302 0.84654 0.96963 0.95568 1.45865 1.24579 1.11594 1.54014 1.18280 0.85003 0.83942 0.79300 1.90855 1.61119 1.30281 1.60853 1.19661 0.96741 0.93713 1.02105 1.21790 0.94852 0.95939 0.97113 1.21579 0.94487 0.99701 0.93837 1.21788 1.01394 0.89453 0.99689 1.17573 0.92851 0.85009 0.98334 1.91536 1.86574 1.51014 1.82040 1.21288 0.94716 0.89605 1.02314 1.98418 1.76543 1.29527 1.96529 1.21045 0.97254 0.85683 0.93401 0.94343 0.99192 0.93095 0.91494 0.92623 0.92849 0.90203 0.92414 0.90738 0.75069 0.81822 0.79519 0.80135 0.92001 0.97860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.50 11.19 21.65 0.24 -54.26 16 2 C -0.05 -2.91 4.92 84.86 0.42 -2.49 16 3 Si 0.97 42.76 29.59 68.60 2.03 44.79 16 4 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 5 H -0.30 -13.35 7.11 99.48 0.71 -12.64 16 6 H -0.30 -13.25 7.11 99.48 0.71 -12.54 16 7 C -0.26 -13.23 9.58 84.03 0.81 -12.43 16 8 H 0.08 3.65 7.88 -2.91 -0.02 3.62 16 9 N -0.61 -28.63 2.99 -699.05 -2.09 -30.72 16 10 C 0.17 8.05 5.30 86.36 0.46 8.51 16 11 C -0.13 -4.53 6.08 30.68 0.19 -4.34 16 12 C -0.10 -2.86 5.17 30.62 0.16 -2.70 16 13 C -0.10 -2.86 2.37 -10.71 -0.03 -2.89 16 14 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 15 C 0.14 3.55 5.07 86.38 0.44 3.99 16 16 N -0.71 -16.35 5.28 -466.04 -2.46 -18.81 16 17 C 0.55 14.49 7.76 86.76 0.67 15.17 16 18 O -0.55 -18.40 13.97 -3.91 -0.05 -18.46 16 19 C -0.12 -2.55 5.88 -20.08 -0.12 -2.66 16 20 C -0.08 -1.06 9.54 22.53 0.21 -0.85 16 21 C -0.08 -0.69 10.03 22.23 0.22 -0.47 16 22 C -0.10 -1.14 10.02 22.36 0.22 -0.92 16 23 C 0.08 1.55 7.27 22.36 0.16 1.71 16 24 F -0.13 -2.75 16.83 44.97 0.76 -2.00 16 25 C -0.05 -1.18 6.36 22.65 0.14 -1.04 16 26 Cl -0.04 -1.10 25.68 -2.72 -0.07 -1.17 16 27 C 0.15 5.62 5.60 86.36 0.48 6.11 16 28 H 0.25 13.99 8.31 -92.71 -0.77 13.21 16 29 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 30 H 0.05 2.72 6.07 -2.38 -0.01 2.71 16 31 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.41 7.70 5.73 -92.71 -0.53 7.16 16 38 H 0.16 1.56 6.40 -2.91 -0.02 1.54 16 39 H 0.19 0.27 8.06 -2.91 -0.02 0.24 16 40 H 0.18 0.81 8.06 -2.91 -0.02 0.78 16 41 H 0.06 2.09 7.14 -2.38 -0.02 2.08 16 42 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16 Total: -1.00 -70.13 358.73 3.32 -66.81 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: 0.52 Total: 9.11 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: 4.45 Total: 4.70 kcal Atomic # 7 Polarization: -99.48 SS G_CDS: -4.31 Total: -103.79 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.05 Total: -18.46 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.76 Total: -2.00 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.07 Total: -1.17 kcal Total: -70.13 3.32 -66.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267141546.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.835 kcal (2) G-P(sol) polarization free energy of solvation -70.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds