Wall clock time and date at job start Sat Apr 11 2020 05:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00142 * 2 1 4 4 H 1.48497 * 109.47049 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47033 * 299.99960 * 3 2 1 6 6 H 1.48503 * 109.47061 * 60.00217 * 3 2 1 7 7 C 1.38812 * 119.99722 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00355 * 163.21310 * 7 2 1 9 9 N 1.36939 * 119.99948 * 343.21501 * 7 2 1 10 10 C 1.46928 * 120.62948 * 151.91586 * 9 7 2 11 11 C 1.53193 * 108.77558 * 126.36714 * 10 9 7 12 12 C 1.53039 * 109.31182 * 54.63322 * 11 10 9 13 13 C 1.53033 * 109.54135 * 298.63679 * 12 11 10 14 14 H 1.08999 * 109.49781 * 301.41198 * 13 12 11 15 15 C 1.53003 * 109.50202 * 181.31824 * 13 12 11 16 16 N 1.46495 * 109.47273 * 174.99893 * 15 13 12 17 17 C 1.34780 * 120.00145 * 179.97438 * 16 15 13 18 18 O 1.21575 * 119.99861 * 0.02562 * 17 16 15 19 19 C 1.47690 * 120.00105 * 179.97438 * 17 16 15 20 20 C 1.39668 * 120.16358 * 0.02562 * 19 17 16 21 21 C 1.37849 * 119.90274 * 180.02562 * 20 19 17 22 22 C 1.38447 * 120.23522 * 359.97438 * 21 20 19 23 23 C 1.38303 * 120.32259 * 359.97438 * 22 21 20 24 24 Cl 1.73601 * 119.95439 * 179.97438 * 23 22 21 25 25 C 1.38433 * 120.09219 * 359.76183 * 23 22 21 26 26 F 1.35103 * 120.11471 * 180.25543 * 25 23 22 27 27 C 1.46924 * 120.63027 * 331.63476 * 9 7 2 28 28 H 0.97006 * 119.99968 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.58390 * 246.15183 * 10 9 7 30 30 H 1.09000 * 109.58614 * 6.43593 * 10 9 7 31 31 H 1.08999 * 109.49860 * 174.58252 * 11 10 9 32 32 H 1.08995 * 109.49557 * 294.65244 * 11 10 9 33 33 H 1.09005 * 109.46372 * 58.65789 * 12 11 10 34 34 H 1.08998 * 109.46124 * 178.62485 * 12 11 10 35 35 H 1.08999 * 109.46670 * 294.99892 * 15 13 12 36 36 H 1.08998 * 109.47208 * 54.99544 * 15 13 12 37 37 H 0.96999 * 120.00090 * 359.97438 * 16 15 13 38 38 H 1.08001 * 120.04863 * 0.02562 * 20 19 17 39 39 H 1.08009 * 119.88480 * 179.97438 * 21 20 19 40 40 H 1.07994 * 119.84109 * 180.02562 * 22 21 20 41 41 H 1.08996 * 109.58947 * 353.42115 * 27 9 7 42 42 H 1.09007 * 109.58852 * 113.84542 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0557 -1.2221 -0.2707 9 7 1.3692 -2.3630 0.3414 10 6 1.8153 -3.6527 -0.2028 11 6 2.0663 -4.6182 0.9598 12 6 0.8085 -4.7033 1.8275 13 6 0.4914 -3.3226 2.4061 14 1 1.3392 -2.9711 2.9941 15 6 -0.7471 -3.4153 3.2997 16 7 -0.9801 -2.1221 3.9472 17 6 -2.0241 -1.9664 4.7853 18 8 -2.7721 -2.8994 5.0043 19 6 -2.2588 -0.6627 5.4384 20 6 -1.4012 0.4113 5.1896 21 6 -1.6250 1.6256 5.8026 22 6 -2.6972 1.7848 6.6638 23 6 -3.5529 0.7280 6.9161 24 17 -4.8941 0.9380 7.9982 25 6 -3.3441 -0.4958 6.3037 26 9 -4.1827 -1.5270 6.5459 27 6 0.2262 -2.3430 1.2643 28 1 -0.4850 0.8401 -0.0004 29 1 1.0438 -4.0602 -0.8561 30 1 2.7362 -3.5117 -0.7687 31 1 2.3048 -5.6066 0.5669 32 1 2.8996 -4.2548 1.5610 33 1 -0.0298 -5.0435 1.2195 34 1 0.9760 -5.4084 2.6417 35 1 -1.6135 -3.6796 2.6934 36 1 -0.5896 -4.1795 4.0608 37 1 -0.3831 -1.3777 3.7727 38 1 -0.5641 0.2906 4.5180 39 1 -0.9614 2.4559 5.6103 40 1 -2.8668 2.7390 7.1402 41 1 0.1001 -1.3385 1.6683 42 1 -0.6777 -2.6414 0.7331 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268813444.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:39 Heat of formation + Delta-G solvation = -47.938669 kcal Electronic energy + Delta-G solvation = -27287.684566 eV Core-core repulsion = 23208.226202 eV Total energy + Delta-G solvation = -4079.458365 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.00813 -40.12886 -38.68802 -37.74331 -36.76725 -34.76799 -33.17733 -31.89875 -30.75561 -30.56918 -29.82566 -25.91611 -25.34584 -24.03278 -22.87537 -22.21484 -20.99538 -20.51311 -19.18857 -18.33814 -17.26431 -16.94102 -16.75659 -16.01031 -15.71174 -15.38101 -15.22968 -14.88216 -14.70391 -14.12296 -13.82788 -13.65259 -13.50876 -13.41920 -13.19817 -12.95545 -12.59567 -12.37884 -12.26941 -12.23989 -11.88439 -11.73818 -11.34268 -11.29642 -11.08940 -10.81451 -10.54743 -10.27691 -10.24937 -10.01330 -9.91047 -9.62534 -9.50477 -9.36353 -9.00469 -8.81068 -8.57405 -6.74561 -5.87840 -3.30687 0.37022 0.68292 1.66642 2.65037 3.20670 3.26255 3.36963 3.38989 3.47052 3.78857 4.36650 4.40209 4.47089 4.64080 4.81156 5.05201 5.15392 5.26317 5.46085 5.50551 5.51979 5.53811 5.56265 5.71017 5.74594 5.88890 5.91888 6.04811 6.22660 6.24848 6.28172 6.34370 6.44736 6.59756 6.61860 6.75841 6.80009 6.95995 7.22328 7.51710 7.62098 7.71046 8.27761 8.35317 9.12188 9.75291 10.33145 11.20132 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.012484 B = 0.003341 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.351937 B = 8378.555550 C =10266.707005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.899 3.101 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.251 4.251 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.143 3.857 11 C -0.133 4.133 12 C -0.100 4.100 13 C -0.128 4.128 14 H 0.070 0.930 15 C 0.131 3.869 16 N -0.709 5.709 17 C 0.556 3.444 18 O -0.530 6.530 19 C -0.157 4.157 20 C -0.048 4.048 21 C -0.124 4.124 22 C -0.060 4.060 23 C -0.089 4.089 24 Cl -0.048 7.048 25 C 0.167 3.833 26 F -0.102 7.102 27 C 0.179 3.821 28 H 0.253 0.747 29 H 0.018 0.982 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.048 0.952 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.405 0.595 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.086 0.914 42 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.962 1.580 13.400 13.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.728 3.272 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.380 4.380 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.016 3.984 11 C -0.172 4.172 12 C -0.138 4.138 13 C -0.149 4.149 14 H 0.088 0.912 15 C 0.007 3.993 16 N -0.361 5.361 17 C 0.341 3.659 18 O -0.408 6.408 19 C -0.161 4.161 20 C -0.067 4.067 21 C -0.142 4.142 22 C -0.079 4.079 23 C -0.117 4.117 24 Cl -0.019 7.019 25 C 0.146 3.854 26 F -0.080 7.080 27 C 0.053 3.947 28 H 0.063 0.937 29 H 0.035 0.965 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.241 0.759 38 H 0.165 0.835 39 H 0.165 0.835 40 H 0.165 0.835 41 H 0.104 0.896 42 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -3.735 1.005 13.606 14.145 hybrid contribution 0.385 1.163 -0.033 1.226 sum -3.349 2.168 13.573 14.147 Atomic orbital electron populations 1.70059 1.05112 1.25337 1.54095 1.25040 0.95268 0.98282 1.01046 0.86279 0.79477 0.84042 0.77361 1.20267 1.21706 1.21548 1.19248 0.92570 0.84709 1.41494 0.91653 1.44030 1.35895 1.01706 1.49857 1.20939 0.97564 0.86906 0.92949 1.21985 0.97323 0.98994 0.98895 1.21331 0.98370 0.95627 0.98515 1.22083 0.95813 0.98497 0.98496 0.91163 1.21458 0.98916 0.83635 0.95256 1.45915 1.29169 1.15563 1.45461 1.17812 0.81541 0.86849 0.79657 1.90830 1.46039 1.41216 1.62747 1.20117 0.97469 0.96650 1.01853 1.21498 0.97460 0.91360 0.96374 1.21175 0.97957 0.98106 0.96989 1.21172 0.92595 0.97633 0.96479 1.20897 0.95571 0.94657 1.00559 1.98391 1.44032 1.97262 1.62179 1.17358 0.88913 0.83788 0.95383 1.91632 1.68319 1.56064 1.92014 1.20708 0.88950 0.97454 0.87616 0.93680 0.96456 0.92882 0.93016 0.92412 0.92396 0.93325 0.91373 0.91976 0.75884 0.83491 0.83478 0.83524 0.89593 0.96284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.33 11.20 55.49 0.62 -23.71 16 2 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 3 Si 0.90 20.13 29.59 -169.99 -5.03 15.10 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.25 -6.46 9.58 -15.06 -0.14 -6.60 16 8 H 0.07 1.68 7.88 -52.49 -0.41 1.26 16 9 N -0.59 -13.92 3.00 -172.58 -0.52 -14.43 16 10 C 0.14 2.85 6.52 -3.71 -0.02 2.83 16 11 C -0.13 -2.17 6.08 -26.61 -0.16 -2.33 16 12 C -0.10 -1.57 5.17 -26.69 -0.14 -1.71 16 13 C -0.13 -2.19 2.36 -90.72 -0.21 -2.40 16 14 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 15 C 0.13 2.09 5.07 -4.04 -0.02 2.07 16 16 N -0.71 -10.97 5.28 -61.30 -0.32 -11.29 16 17 C 0.56 9.19 7.77 -12.40 -0.10 9.09 16 18 O -0.53 -10.47 15.34 5.30 0.08 -10.39 16 19 C -0.16 -2.19 5.88 -104.92 -0.62 -2.81 16 20 C -0.05 -0.54 9.54 -39.19 -0.37 -0.91 16 21 C -0.12 -1.12 10.03 -39.65 -0.40 -1.51 16 22 C -0.06 -0.54 9.82 -39.48 -0.39 -0.93 16 23 C -0.09 -1.02 6.32 -39.49 -0.25 -1.27 16 24 Cl -0.05 -0.51 28.61 -51.86 -1.48 -2.00 16 25 C 0.17 2.35 7.26 -38.93 -0.28 2.07 16 26 F -0.10 -1.67 15.12 2.25 0.03 -1.63 16 27 C 0.18 3.86 4.36 -3.93 -0.02 3.85 16 28 H 0.25 6.62 8.31 -40.82 -0.34 6.28 16 29 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.40 5.81 5.73 -40.82 -0.23 5.58 16 38 H 0.15 1.51 6.40 -52.49 -0.34 1.18 16 39 H 0.15 0.95 8.06 -52.48 -0.42 0.53 16 40 H 0.15 0.91 8.06 -52.49 -0.42 0.48 16 41 H 0.09 2.00 5.26 -51.93 -0.27 1.72 16 42 H 0.02 0.46 8.14 -51.92 -0.42 0.03 16 LS Contribution 361.04 15.07 5.44 5.44 Total: -1.00 -30.35 361.04 -9.84 -40.19 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -5.45 Total: 3.31 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -3.21 Total: -0.59 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: -0.22 Total: -49.43 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.08 Total: -10.39 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.03 Total: -1.63 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.03 Total: 15.10 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.48 Total: -2.00 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.35 -9.84 -40.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268813444.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.748 kcal (2) G-P(sol) polarization free energy of solvation -30.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds