Wall clock time and date at job start Sat Apr 11 2020 05:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00039 * 2 1 4 4 H 1.48497 * 109.47292 * 274.90543 * 3 2 1 5 5 H 1.48505 * 109.46906 * 34.90583 * 3 2 1 6 6 H 1.48505 * 109.46919 * 154.90410 * 3 2 1 7 7 C 1.38813 * 119.99606 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00458 * 339.74112 * 7 2 1 9 9 N 1.36941 * 119.99533 * 159.74535 * 7 2 1 10 10 C 1.46928 * 120.62546 * 152.75809 * 9 7 2 11 11 C 1.53190 * 108.77463 * 126.41687 * 10 9 7 12 12 C 1.53032 * 109.31769 * 54.62610 * 11 10 9 13 13 C 1.53037 * 109.54087 * 298.64191 * 12 11 10 14 14 H 1.09000 * 109.49408 * 301.37495 * 13 12 11 15 15 C 1.53002 * 109.49746 * 181.31621 * 13 12 11 16 16 N 1.46499 * 109.46995 * 174.99832 * 15 13 12 17 17 C 1.34777 * 120.00061 * 179.97438 * 16 15 13 18 18 O 1.21566 * 120.00060 * 0.02562 * 17 16 15 19 19 C 1.47728 * 120.00122 * 179.97438 * 17 16 15 20 20 C 1.39665 * 120.11308 * 359.72403 * 19 17 16 21 21 C 1.37832 * 119.90128 * 179.74932 * 20 19 17 22 22 C 1.38642 * 120.13302 * 0.52735 * 21 20 19 23 23 F 1.35099 * 119.88184 * 179.76650 * 22 21 20 24 24 C 1.38733 * 120.23009 * 359.74861 * 22 21 20 25 25 Cl 1.73601 * 119.95430 * 180.02562 * 24 22 21 26 26 C 1.37961 * 120.09640 * 359.97268 * 24 22 21 27 27 C 1.46923 * 120.63496 * 332.77841 * 9 7 2 28 28 H 0.97000 * 119.99933 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.58953 * 6.62137 * 10 9 7 30 30 H 1.09002 * 109.58183 * 246.19738 * 10 9 7 31 31 H 1.09008 * 109.49600 * 294.67710 * 11 10 9 32 32 H 1.09005 * 109.52363 * 174.60178 * 11 10 9 33 33 H 1.08999 * 109.46136 * 178.61600 * 12 11 10 34 34 H 1.09008 * 109.44475 * 58.65267 * 12 11 10 35 35 H 1.08995 * 109.47294 * 54.99738 * 15 13 12 36 36 H 1.09003 * 109.46723 * 294.99620 * 15 13 12 37 37 H 0.97002 * 120.00046 * 0.02562 * 16 15 13 38 38 H 1.08006 * 120.04449 * 0.02562 * 20 19 17 39 39 H 1.07999 * 119.93006 * 180.27534 * 21 20 19 40 40 H 1.07996 * 120.07068 * 180.02562 * 26 24 22 41 41 H 1.08994 * 109.58770 * 113.79914 * 27 9 7 42 42 H 1.09007 * 109.58066 * 353.37282 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3940 2.1063 -1.3949 5 1 1.5033 2.6205 0.8012 6 1 3.5958 1.4124 0.5938 7 6 2.0102 -1.2022 -0.0005 8 1 1.5203 -2.1087 0.3229 9 7 3.3161 -1.2387 -0.4111 10 6 4.2335 -2.2655 0.1015 11 6 4.8804 -2.9857 -1.0857 12 6 5.5405 -1.9551 -2.0044 13 6 4.4779 -0.9944 -2.5429 14 1 3.7184 -1.5585 -3.0843 15 6 5.1337 0.0153 -3.4870 16 7 4.1008 0.8583 -4.0942 17 6 4.4473 1.8260 -4.9660 18 8 5.6169 1.9990 -5.2489 19 6 3.4058 2.6757 -5.5788 20 6 2.0607 2.4746 -5.2608 21 6 1.0930 3.2733 -5.8311 22 6 1.4512 4.2682 -6.7277 23 9 0.4981 5.0451 -7.2873 24 6 2.7851 4.4691 -7.0519 25 17 3.2257 5.7175 -8.1749 26 6 3.7621 3.6789 -6.4823 27 6 3.8265 -0.2516 -1.3722 28 1 -0.4850 0.8400 -0.0004 29 1 3.6782 -2.9829 0.7057 30 1 5.0066 -1.7944 0.7085 31 1 4.1168 -3.5312 -1.6404 32 1 5.6340 -3.6840 -0.7215 33 1 6.0228 -2.4670 -2.8372 34 1 6.2867 -1.3932 -1.4424 35 1 5.6746 -0.5169 -4.2694 36 1 5.8285 0.6397 -2.9253 37 1 3.1676 0.7205 -3.8683 38 1 1.7799 1.6972 -4.5656 39 1 0.0532 3.1210 -5.5821 40 1 4.8003 3.8359 -6.7346 41 1 4.5664 0.3836 -0.8854 42 1 3.0025 0.3597 -1.7405 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269021787.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:45 Heat of formation + Delta-G solvation = -44.609682 kcal Electronic energy + Delta-G solvation = -27137.390149 eV Core-core repulsion = 23058.076140 eV Total energy + Delta-G solvation = -4079.314009 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.35070 -40.43664 -38.78369 -37.99657 -36.84850 -35.02493 -33.23356 -31.74879 -31.41884 -30.84027 -30.30969 -26.12209 -25.38117 -23.92437 -23.42838 -22.51588 -21.08165 -20.67989 -19.48782 -18.54870 -17.66463 -17.08093 -16.90387 -16.15593 -15.79848 -15.72115 -15.54792 -15.13047 -14.36203 -14.32496 -14.14975 -13.98951 -13.79578 -13.46977 -13.36072 -13.23725 -13.19640 -12.91999 -12.53813 -12.18385 -11.84214 -11.80896 -11.68713 -11.53725 -11.34535 -10.89765 -10.68546 -10.60497 -10.21249 -10.16954 -9.91770 -9.79557 -9.54944 -9.46191 -9.21614 -8.97709 -8.72891 -7.07422 -6.05257 -3.41154 0.22194 0.63921 1.59177 2.44172 3.05841 3.16736 3.37171 3.40218 3.42379 3.61006 4.21360 4.40482 4.41207 4.57224 4.69508 4.73525 5.05413 5.09478 5.15933 5.21881 5.34718 5.36536 5.46434 5.53437 5.62024 5.70831 5.75410 5.76306 5.94509 6.01975 6.04400 6.16439 6.22199 6.26468 6.36698 6.47413 6.48070 6.61580 6.62611 6.88921 7.41127 7.85729 8.07388 8.22970 8.84001 9.61305 9.99731 11.10492 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.013829 B = 0.003270 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.274325 B = 8561.229860 C = 9995.776372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.023 3.977 3 Si 0.878 3.122 4 H -0.290 1.290 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.258 4.258 8 H 0.087 0.913 9 N -0.606 5.606 10 C 0.146 3.854 11 C -0.135 4.135 12 C -0.101 4.101 13 C -0.121 4.121 14 H 0.081 0.919 15 C 0.125 3.875 16 N -0.717 5.717 17 C 0.560 3.440 18 O -0.537 6.537 19 C -0.132 4.132 20 C -0.049 4.049 21 C -0.144 4.144 22 C 0.133 3.867 23 F -0.122 7.122 24 C -0.085 4.085 25 Cl -0.045 7.045 26 C -0.024 4.024 27 C 0.134 3.866 28 H 0.263 0.737 29 H 0.063 0.937 30 H 0.022 0.978 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.405 0.595 38 H 0.148 0.852 39 H 0.156 0.844 40 H 0.157 0.843 41 H 0.027 0.973 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.308 4.407 -13.287 15.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.175 4.175 3 Si 0.709 3.291 4 H -0.218 1.218 5 H -0.231 1.231 6 H -0.195 1.195 7 C -0.387 4.387 8 H 0.104 0.896 9 N -0.329 5.329 10 C 0.020 3.980 11 C -0.174 4.174 12 C -0.139 4.139 13 C -0.141 4.141 14 H 0.099 0.901 15 C 0.002 3.998 16 N -0.369 5.369 17 C 0.346 3.654 18 O -0.416 6.416 19 C -0.135 4.135 20 C -0.068 4.068 21 C -0.163 4.163 22 C 0.113 3.887 23 F -0.100 7.100 24 C -0.113 4.113 25 Cl -0.016 7.016 26 C -0.044 4.044 27 C 0.008 3.992 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.040 0.960 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.241 0.759 38 H 0.166 0.834 39 H 0.174 0.826 40 H 0.175 0.825 41 H 0.045 0.955 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.982 4.726 -13.543 15.953 hybrid contribution -0.290 1.263 -0.025 1.297 sum 6.692 5.989 -13.569 16.272 Atomic orbital electron populations 1.69831 1.05625 1.26503 1.53048 1.25270 0.95201 0.97351 0.99715 0.87046 0.80272 0.84813 0.76992 1.21781 1.23092 1.19541 1.18966 0.84736 0.94789 1.40177 0.89555 1.44345 1.08557 1.32941 1.47065 1.20967 0.92433 0.91235 0.93360 1.21989 0.99460 0.97473 0.98446 1.21340 0.96937 0.96852 0.98756 1.22002 0.98531 0.96550 0.97039 0.90066 1.21530 0.90072 0.92287 0.95944 1.46023 1.11868 1.34503 1.44478 1.17948 0.87981 0.80197 0.79243 1.90777 1.18724 1.69980 1.62110 1.20003 0.93823 0.99007 1.00704 1.21452 0.91176 0.97635 0.96549 1.21153 1.02150 0.95392 0.97624 1.17653 0.84145 0.91747 0.95198 1.91565 1.62556 1.72751 1.83123 1.20837 0.92655 0.97418 1.00382 1.98396 1.92888 1.50786 1.59484 1.21036 1.00016 0.91055 0.92294 1.21371 0.96871 0.91810 0.89162 0.92741 0.91875 0.95959 0.91915 0.92515 0.92668 0.92263 0.91229 0.91296 0.75877 0.83433 0.82637 0.82514 0.95480 0.91418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.18 13.97 55.49 0.78 -25.40 16 2 C 0.02 0.64 5.24 -17.43 -0.09 0.54 16 3 Si 0.88 21.10 24.35 -169.99 -4.14 16.96 16 4 H -0.29 -6.42 6.70 56.52 0.38 -6.04 16 5 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 6 H -0.27 -6.54 6.45 56.52 0.36 -6.17 16 7 C -0.26 -6.78 10.04 -15.06 -0.15 -6.94 16 8 H 0.09 2.44 8.05 -52.49 -0.42 2.02 16 9 N -0.61 -13.35 2.77 -172.32 -0.48 -13.83 16 10 C 0.15 2.67 6.52 -3.71 -0.02 2.65 16 11 C -0.13 -1.99 6.08 -26.62 -0.16 -2.15 16 12 C -0.10 -1.39 5.17 -26.70 -0.14 -1.53 16 13 C -0.12 -1.85 2.37 -90.50 -0.21 -2.06 16 14 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 15 C 0.13 1.76 5.07 -4.04 -0.02 1.74 16 16 N -0.72 -10.05 5.28 -61.29 -0.32 -10.38 16 17 C 0.56 8.12 7.77 -12.38 -0.10 8.02 16 18 O -0.54 -9.13 16.34 5.31 0.09 -9.04 16 19 C -0.13 -1.64 5.87 -104.97 -0.62 -2.25 16 20 C -0.05 -0.55 9.54 -39.20 -0.37 -0.92 16 21 C -0.14 -1.48 10.01 -39.58 -0.40 -1.88 16 22 C 0.13 1.47 7.28 -39.25 -0.29 1.19 16 23 F -0.12 -1.38 16.83 2.25 0.04 -1.35 16 24 C -0.09 -0.96 6.32 -39.50 -0.25 -1.20 16 25 Cl -0.04 -0.47 28.60 -51.86 -1.48 -1.95 16 26 C -0.02 -0.29 9.37 -39.16 -0.37 -0.65 16 27 C 0.13 2.62 3.28 -3.72 -0.01 2.61 16 28 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.81 8.14 -51.92 -0.42 0.38 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.40 5.41 5.73 -40.82 -0.23 5.18 16 38 H 0.15 1.51 6.40 -52.48 -0.34 1.18 16 39 H 0.16 1.29 8.06 -52.49 -0.42 0.86 16 40 H 0.16 1.76 7.65 -52.49 -0.40 1.36 16 41 H 0.03 0.55 6.98 -51.93 -0.36 0.19 16 42 H 0.07 1.42 3.71 -51.93 -0.19 1.23 16 LS Contribution 356.28 15.07 5.37 5.37 Total: -1.00 -30.13 356.28 -8.71 -38.85 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -5.36 Total: 3.61 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -3.20 Total: -2.83 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: -0.03 Total: -49.61 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.09 Total: -9.04 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.14 Total: 16.96 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.48 Total: -1.95 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.13 -8.71 -38.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269021787.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.764 kcal (2) G-P(sol) polarization free energy of solvation -30.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds