Wall clock time and date at job start Sat Apr 11 2020 05:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86805 * 119.99583 * 2 1 4 4 H 1.48504 * 109.46739 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46983 * 299.99510 * 3 2 1 6 6 H 1.48496 * 109.47296 * 60.00209 * 3 2 1 7 7 C 1.38795 * 120.00316 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00374 * 180.02562 * 7 2 1 9 9 S 1.76207 * 119.99748 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99628 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47126 * 180.02562 * 10 9 7 12 12 O 1.21285 * 119.99937 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00274 * 180.02562 * 11 10 9 14 14 C 1.46932 * 120.62958 * 179.97438 * 13 11 10 15 15 C 1.53192 * 108.77496 * 233.62816 * 14 13 11 16 16 C 1.53038 * 109.31372 * 305.36764 * 15 14 13 17 17 O 1.42901 * 109.46183 * 181.38622 * 16 15 14 18 18 C 1.35723 * 117.00218 * 150.00078 * 17 16 15 19 19 N 1.32223 * 119.69751 * 359.97438 * 18 17 16 20 20 C 1.31963 * 121.67618 * 180.02562 * 19 18 17 21 21 C 1.38069 * 120.87575 * 359.97438 * 20 19 18 22 22 C 1.38790 * 119.30490 * 0.25946 * 21 20 19 23 23 C 1.38571 * 118.46805 * 359.52114 * 22 21 20 24 24 F 1.35102 * 120.46977 * 180.22511 * 23 22 21 25 25 C 1.53044 * 109.54058 * 61.36284 * 16 15 14 26 26 C 1.46920 * 120.62959 * 0.02562 * 13 11 10 27 27 H 0.96997 * 120.00496 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47624 * 59.99991 * 10 9 7 29 29 H 1.09005 * 109.47085 * 299.99534 * 10 9 7 30 30 H 1.09003 * 109.58273 * 113.84324 * 14 13 11 31 31 H 1.08992 * 109.70160 * 353.48931 * 14 13 11 32 32 H 1.08991 * 109.49718 * 185.41752 * 15 14 13 33 33 H 1.09003 * 109.52079 * 65.33334 * 15 14 13 34 34 H 1.08998 * 109.46005 * 301.36004 * 16 15 14 35 35 H 1.07998 * 119.56724 * 180.02562 * 20 19 18 36 36 H 1.08002 * 120.34312 * 179.97438 * 21 20 19 37 37 H 1.08004 * 120.76707 * 179.74732 * 22 21 20 38 38 H 1.08999 * 109.49542 * 58.58760 * 25 16 15 39 39 H 1.08998 * 109.50046 * 178.68268 * 25 16 15 40 40 H 1.09002 * 109.58759 * 246.15929 * 26 13 11 41 41 H 1.08993 * 109.59127 * 6.44192 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0019 10 6 2.5159 -3.8913 0.0029 11 6 1.9875 -5.3027 0.0036 12 8 0.7912 -5.5023 0.0038 13 7 2.8443 -6.3430 0.0049 14 6 2.3443 -7.7246 0.0061 15 6 2.9848 -8.4798 1.1749 16 6 4.5077 -8.3626 1.0795 17 8 5.1095 -9.0931 2.1502 18 6 6.3348 -9.6288 1.9184 19 7 6.9115 -9.4599 0.7406 20 6 8.1013 -9.9639 0.4730 21 6 8.7924 -10.6913 1.4215 22 6 8.2208 -10.8963 2.6695 23 6 6.9724 -10.3505 2.9220 24 9 6.3805 -10.5213 4.1244 25 6 4.9148 -6.8904 1.1745 26 6 4.2960 -6.1172 0.0063 27 1 -0.4851 0.8400 -0.0004 28 1 3.1245 -3.7305 0.8927 29 1 3.1245 -3.7320 -0.8873 30 1 2.6106 -8.2104 -0.9327 31 1 1.2605 -7.7230 0.1221 32 1 2.6973 -9.5302 1.1306 33 1 2.6451 -8.0490 2.1168 34 1 4.8443 -8.7714 0.1267 35 1 8.5408 -9.8048 -0.5006 36 1 9.7655 -11.1002 1.1931 37 1 8.7387 -11.4650 3.4277 38 1 4.5569 -6.4741 2.1162 39 1 6.0008 -6.8096 1.1300 40 1 4.7219 -6.4715 -0.9324 41 1 4.5002 -5.0527 0.1213 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278486409.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:00 Heat of formation + Delta-G solvation = -76.945928 kcal Electronic energy + Delta-G solvation = -26341.556252 eV Core-core repulsion = 22262.883745 eV Total energy + Delta-G solvation = -4078.672508 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.23613 -41.10478 -39.92386 -38.57859 -36.51109 -32.85018 -32.60482 -32.42872 -31.49207 -30.45581 -28.93037 -25.67135 -25.37818 -23.98872 -23.68498 -23.27572 -21.15175 -19.23903 -18.96590 -18.08143 -17.69929 -17.58094 -16.71004 -16.60819 -15.84778 -15.66659 -15.37470 -15.20764 -14.92099 -14.80484 -14.37609 -14.12232 -13.92564 -13.86513 -13.55252 -13.35235 -13.07553 -12.80338 -12.75111 -12.56909 -12.26584 -12.02284 -11.84625 -11.45805 -11.07207 -11.01864 -10.86588 -10.80532 -10.73941 -10.31859 -10.22158 -9.79477 -9.37654 -9.07530 -8.85577 -8.60670 -8.22246 -6.50182 -6.21721 -3.92297 0.44216 0.59853 2.42130 2.90074 3.04623 3.10390 3.21593 3.25805 3.31022 3.56554 3.60141 3.82086 4.15864 4.19816 4.36737 4.42888 4.46985 4.59434 4.80177 4.86703 4.96297 5.04849 5.09143 5.13513 5.21999 5.31335 5.34064 5.41933 5.46770 5.55386 5.58420 5.64238 5.83761 5.84833 5.86988 5.89763 6.05237 6.11061 6.58858 6.80018 7.21913 7.51074 7.59912 8.35340 8.53290 9.23690 10.85754 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.019356 B = 0.002173 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.230275 B =12881.643156 C =13551.992240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.151 4.151 11 C 0.537 3.463 12 O -0.515 6.515 13 N -0.623 5.623 14 C 0.119 3.881 15 C -0.132 4.132 16 C 0.093 3.907 17 O -0.292 6.292 18 C 0.304 3.696 19 N -0.514 5.514 20 C 0.132 3.868 21 C -0.188 4.188 22 C -0.075 4.075 23 C 0.027 3.973 24 F -0.123 7.123 25 C -0.150 4.150 26 C 0.115 3.885 27 H 0.268 0.732 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.168 0.832 36 H 0.147 0.853 37 H 0.153 0.847 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.831 -24.157 1.859 31.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.682 4.682 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.302 4.302 11 C 0.325 3.675 12 O -0.389 6.389 13 N -0.360 5.360 14 C -0.004 4.004 15 C -0.170 4.170 16 C 0.037 3.963 17 O -0.199 6.199 18 C 0.124 3.876 19 N -0.237 5.237 20 C -0.023 4.023 21 C -0.208 4.208 22 C -0.101 4.101 23 C 0.004 3.996 24 F -0.102 7.102 25 C -0.189 4.189 26 C -0.009 4.009 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.086 0.914 31 H 0.121 0.879 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.112 0.888 35 H 0.185 0.815 36 H 0.165 0.835 37 H 0.171 0.829 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 17.208 -23.855 1.500 29.452 hybrid contribution 2.540 0.798 0.754 2.767 sum 19.747 -23.057 2.254 30.441 Atomic orbital electron populations 1.70024 1.05948 1.27347 1.46935 1.24996 0.95032 0.99043 0.94557 0.86116 0.79579 0.81892 0.77901 1.19618 1.20560 1.20573 1.22894 0.94906 0.91594 1.58828 0.90894 1.85414 1.04974 0.96380 1.96691 1.23561 1.06518 0.95351 1.04740 1.20345 0.86182 0.86197 0.74808 1.90693 1.15150 1.85208 1.47879 1.48165 1.06354 1.05789 1.75654 1.21452 1.01042 0.81054 0.96820 1.22069 0.92199 1.01800 1.00955 1.22472 0.92794 0.90994 0.90028 1.86391 1.26523 1.65493 1.41464 1.19937 0.87196 0.91391 0.89126 1.67437 1.13322 1.24287 1.18679 1.22579 0.88506 0.91529 0.99714 1.21932 1.02597 1.02797 0.93449 1.21548 0.92380 0.97584 0.98628 1.17688 0.94257 1.05257 0.82357 1.91546 1.83388 1.93899 1.41370 1.22361 1.01538 0.94505 1.00470 1.21626 0.79864 1.01652 0.97734 0.92234 0.89227 0.89198 0.91443 0.87923 0.89933 0.90154 0.88806 0.81469 0.83492 0.82918 0.90416 0.90202 0.91023 0.88594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.21 13.22 55.49 0.73 -25.47 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.43 29.55 -169.99 -5.02 16.40 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.53 -15.21 9.50 30.94 0.29 -14.91 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 10 C -0.15 -3.08 4.50 36.01 0.16 -2.91 16 11 C 0.54 10.22 7.72 -10.99 -0.08 10.14 16 12 O -0.52 -11.76 15.28 5.55 0.08 -11.68 16 13 N -0.62 -8.85 2.97 -172.80 -0.51 -9.36 16 14 C 0.12 1.43 6.43 -3.71 -0.02 1.40 16 15 C -0.13 -1.39 5.73 -26.61 -0.15 -1.54 16 16 C 0.09 0.97 2.34 -26.69 -0.06 0.91 16 17 O -0.29 -3.40 9.63 -18.88 -0.18 -3.58 16 18 C 0.30 3.16 7.46 -17.07 -0.13 3.03 16 19 N -0.51 -4.62 8.65 -13.27 -0.11 -4.73 16 20 C 0.13 0.78 11.17 -17.56 -0.20 0.58 16 21 C -0.19 -0.86 10.10 -39.44 -0.40 -1.26 16 22 C -0.08 -0.45 10.16 -39.25 -0.40 -0.85 16 23 C 0.03 0.25 7.35 -39.14 -0.29 -0.04 16 24 F -0.12 -1.34 17.13 2.25 0.04 -1.30 16 25 C -0.15 -1.58 5.70 -26.63 -0.15 -1.73 16 26 C 0.11 1.28 6.34 -3.74 -0.02 1.26 16 27 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.09 1.70 7.69 -51.92 -0.40 1.30 16 29 H 0.09 1.68 7.94 -51.91 -0.41 1.27 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.10 1.39 7.01 -51.93 -0.36 1.03 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.09 0.94 6.98 -51.93 -0.36 0.57 16 35 H 0.17 0.48 8.06 -52.49 -0.42 0.06 16 36 H 0.15 0.22 8.06 -52.49 -0.42 -0.20 16 37 H 0.15 0.53 8.06 -52.48 -0.42 0.11 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.10 1.09 5.93 -51.93 -0.31 0.78 16 LS Contribution 363.03 15.07 5.47 5.47 Total: -1.00 -35.52 363.03 -8.46 -43.98 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -5.20 Total: -1.91 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -1.55 Total: -3.93 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: 0.11 Total: -39.57 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.10 Total: -15.26 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.52 -8.46 -43.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278486409.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.964 kcal (2) G-P(sol) polarization free energy of solvation -35.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds