Wall clock time and date at job start Sat Apr 11 2020 05:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86805 * 119.99583 * 2 1 4 4 H 1.48504 * 109.46739 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46983 * 299.99510 * 3 2 1 6 6 H 1.48496 * 109.47296 * 60.00209 * 3 2 1 7 7 C 1.38795 * 120.00316 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00374 * 180.02562 * 7 2 1 9 9 S 1.76207 * 119.99748 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99628 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47126 * 180.02562 * 10 9 7 12 12 O 1.21285 * 119.99937 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00274 * 180.02562 * 11 10 9 14 14 C 1.46932 * 120.62958 * 179.97438 * 13 11 10 15 15 C 1.53192 * 108.77496 * 233.62816 * 14 13 11 16 16 C 1.53038 * 109.31372 * 305.36764 * 15 14 13 17 17 O 1.42901 * 109.46183 * 181.38622 * 16 15 14 18 18 C 1.35723 * 117.00218 * 150.00078 * 17 16 15 19 19 N 1.32223 * 119.69751 * 359.97438 * 18 17 16 20 20 C 1.31963 * 121.67618 * 180.02562 * 19 18 17 21 21 C 1.38069 * 120.87575 * 359.97438 * 20 19 18 22 22 C 1.38790 * 119.30490 * 0.25946 * 21 20 19 23 23 C 1.38571 * 118.46805 * 359.52114 * 22 21 20 24 24 F 1.35102 * 120.46977 * 180.22511 * 23 22 21 25 25 C 1.53044 * 109.54058 * 61.36284 * 16 15 14 26 26 C 1.46920 * 120.62959 * 0.02562 * 13 11 10 27 27 H 0.96997 * 120.00496 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47624 * 59.99991 * 10 9 7 29 29 H 1.09005 * 109.47085 * 299.99534 * 10 9 7 30 30 H 1.09003 * 109.58273 * 113.84324 * 14 13 11 31 31 H 1.08992 * 109.70160 * 353.48931 * 14 13 11 32 32 H 1.08991 * 109.49718 * 185.41752 * 15 14 13 33 33 H 1.09003 * 109.52079 * 65.33334 * 15 14 13 34 34 H 1.08998 * 109.46005 * 301.36004 * 16 15 14 35 35 H 1.07998 * 119.56724 * 180.02562 * 20 19 18 36 36 H 1.08002 * 120.34312 * 179.97438 * 21 20 19 37 37 H 1.08004 * 120.76707 * 179.74732 * 22 21 20 38 38 H 1.08999 * 109.49542 * 58.58760 * 25 16 15 39 39 H 1.08998 * 109.50046 * 178.68268 * 25 16 15 40 40 H 1.09002 * 109.58759 * 246.15929 * 26 13 11 41 41 H 1.08993 * 109.59127 * 6.44192 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0019 10 6 2.5159 -3.8913 0.0029 11 6 1.9875 -5.3027 0.0036 12 8 0.7912 -5.5023 0.0038 13 7 2.8443 -6.3430 0.0049 14 6 2.3443 -7.7246 0.0061 15 6 2.9848 -8.4798 1.1749 16 6 4.5077 -8.3626 1.0795 17 8 5.1095 -9.0931 2.1502 18 6 6.3348 -9.6288 1.9184 19 7 6.9115 -9.4599 0.7406 20 6 8.1013 -9.9639 0.4730 21 6 8.7924 -10.6913 1.4215 22 6 8.2208 -10.8963 2.6695 23 6 6.9724 -10.3505 2.9220 24 9 6.3805 -10.5213 4.1244 25 6 4.9148 -6.8904 1.1745 26 6 4.2960 -6.1172 0.0063 27 1 -0.4851 0.8400 -0.0004 28 1 3.1245 -3.7305 0.8927 29 1 3.1245 -3.7320 -0.8873 30 1 2.6106 -8.2104 -0.9327 31 1 1.2605 -7.7230 0.1221 32 1 2.6973 -9.5302 1.1306 33 1 2.6451 -8.0490 2.1168 34 1 4.8443 -8.7714 0.1267 35 1 8.5408 -9.8048 -0.5006 36 1 9.7655 -11.1002 1.1931 37 1 8.7387 -11.4650 3.4277 38 1 4.5569 -6.4741 2.1162 39 1 6.0008 -6.8096 1.1300 40 1 4.7219 -6.4715 -0.9324 41 1 4.5002 -5.0527 0.1213 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278486409.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:59 Heat of formation + Delta-G solvation = -101.198258 kcal Electronic energy + Delta-G solvation = -26342.607912 eV Core-core repulsion = 22262.883745 eV Total energy + Delta-G solvation = -4079.724168 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.93222 -41.79952 -41.04612 -39.46515 -37.65126 -34.59148 -33.75236 -33.31258 -32.46150 -31.13235 -30.33953 -27.69745 -26.40556 -24.62353 -24.50682 -24.05048 -22.17364 -20.49409 -19.66341 -19.60262 -18.72979 -18.20668 -18.06113 -17.34084 -16.96834 -16.87545 -16.69241 -16.36006 -16.02437 -15.93430 -15.59550 -15.14476 -14.93784 -14.71675 -14.50498 -14.45574 -14.31881 -13.97970 -13.60863 -13.45540 -13.28911 -13.19303 -13.11912 -12.93170 -12.91566 -12.60550 -12.35080 -11.74519 -11.70733 -11.60961 -11.16344 -10.91583 -10.85449 -10.77035 -10.26879 -9.81122 -9.45029 -8.68065 -8.35117 -6.13530 -0.07551 0.10176 1.24256 1.41323 1.44884 1.50542 1.56761 1.79603 2.05336 2.26580 2.60005 2.99074 2.99459 3.22015 3.30061 3.53423 3.61168 3.69138 3.80227 3.92292 3.98368 4.01837 4.11876 4.20335 4.23628 4.33463 4.43556 4.55372 4.60358 4.62322 4.69615 4.73585 4.84181 4.93427 4.96591 5.02680 5.11971 5.41661 5.45730 5.48068 6.12904 6.19120 6.21362 6.68748 7.06137 7.09007 8.74401 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.019356 B = 0.002173 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.230275 B =12881.643156 C =13551.992240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.012 3.988 3 Si 1.000 3.000 4 H -0.256 1.256 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.125 4.125 11 C 0.535 3.465 12 O -0.564 6.564 13 N -0.610 5.610 14 C 0.118 3.882 15 C -0.124 4.124 16 C 0.099 3.901 17 O -0.314 6.314 18 C 0.277 3.723 19 N -0.529 5.529 20 C 0.128 3.872 21 C -0.169 4.169 22 C -0.070 4.070 23 C -0.004 4.004 24 F -0.142 7.142 25 C -0.142 4.142 26 C 0.111 3.889 27 H 0.271 0.729 28 H 0.105 0.895 29 H 0.111 0.889 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.060 0.940 34 H 0.104 0.896 35 H 0.200 0.800 36 H 0.187 0.813 37 H 0.178 0.822 38 H 0.059 0.941 39 H 0.091 0.909 40 H 0.101 0.899 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.050 -25.152 0.858 34.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.821 3.179 4 H -0.179 1.179 5 H -0.198 1.198 6 H -0.200 1.200 7 C -0.691 4.691 8 H 0.101 0.899 9 S 0.075 5.925 10 C -0.276 4.276 11 C 0.323 3.677 12 O -0.442 6.442 13 N -0.344 5.344 14 C -0.004 4.004 15 C -0.163 4.163 16 C 0.043 3.957 17 O -0.222 6.222 18 C 0.097 3.903 19 N -0.252 5.252 20 C -0.028 4.028 21 C -0.189 4.189 22 C -0.096 4.096 23 C -0.027 4.027 24 F -0.121 7.121 25 C -0.180 4.180 26 C -0.011 4.011 27 H 0.080 0.920 28 H 0.123 0.877 29 H 0.129 0.871 30 H 0.114 0.886 31 H 0.101 0.899 32 H 0.118 0.882 33 H 0.079 0.921 34 H 0.122 0.878 35 H 0.217 0.783 36 H 0.204 0.796 37 H 0.196 0.804 38 H 0.078 0.922 39 H 0.109 0.891 40 H 0.119 0.881 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 21.482 -24.895 0.502 32.886 hybrid contribution 1.415 0.898 1.038 1.971 sum 22.897 -23.997 1.539 33.204 Atomic orbital electron populations 1.70189 1.07990 1.28556 1.48067 1.26145 0.95986 1.03365 0.93759 0.84893 0.78636 0.76265 0.78068 1.17940 1.19844 1.20028 1.23216 0.95319 0.91847 1.58753 0.89875 1.85599 1.10573 0.99321 1.97020 1.23381 1.03465 0.94325 1.06408 1.20128 0.85960 0.86643 0.74972 1.90677 1.17148 1.85752 1.50607 1.48157 1.07262 1.05609 1.73409 1.21612 1.00093 0.79873 0.98812 1.21968 0.92718 1.02329 0.99244 1.22373 0.92188 0.90757 0.90415 1.86346 1.27744 1.66107 1.41962 1.20099 0.87168 0.92771 0.90235 1.67433 1.14714 1.25056 1.18045 1.23272 0.87527 0.90632 1.01327 1.22397 1.03546 1.00888 0.92060 1.21953 0.90984 0.96674 0.99954 1.18113 0.95753 1.06914 0.81876 1.91489 1.83962 1.94225 1.42421 1.22266 1.02002 0.94561 0.99195 1.21890 0.77711 1.02062 0.99435 0.91995 0.87664 0.87101 0.88550 0.89909 0.88244 0.92104 0.87848 0.78292 0.79563 0.80439 0.92205 0.89072 0.88125 0.88582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.39 13.22 21.65 0.29 -56.10 16 2 C 0.01 0.69 5.49 84.86 0.47 1.16 16 3 Si 1.00 43.78 29.55 68.60 2.03 45.81 16 4 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 5 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.54 -31.21 9.50 67.95 0.65 -30.56 16 8 H 0.08 4.43 7.80 -2.91 -0.02 4.40 16 9 S -0.15 -8.58 20.57 -56.49 -1.16 -9.75 16 10 C -0.12 -5.07 4.50 71.24 0.32 -4.75 16 11 C 0.54 20.61 7.72 87.66 0.68 21.29 16 12 O -0.56 -26.78 15.28 -3.04 -0.05 -26.82 16 13 N -0.61 -16.83 2.97 -819.01 -2.43 -19.26 16 14 C 0.12 2.75 6.43 86.36 0.56 3.30 16 15 C -0.12 -2.57 5.73 30.67 0.18 -2.40 16 16 C 0.10 1.95 2.34 30.62 0.07 2.02 16 17 O -0.31 -7.29 9.63 -90.46 -0.87 -8.16 16 18 C 0.28 5.52 7.46 84.84 0.63 6.15 16 19 N -0.53 -8.32 8.65 -308.76 -2.67 -10.99 16 20 C 0.13 1.03 11.17 84.63 0.95 1.98 16 21 C -0.17 -0.84 10.10 22.36 0.23 -0.62 16 22 C -0.07 -0.66 10.16 22.48 0.23 -0.43 16 23 C 0.00 -0.08 7.35 22.55 0.17 0.09 16 24 F -0.14 -3.17 17.13 44.97 0.77 -2.40 16 25 C -0.14 -2.81 5.70 30.66 0.17 -2.63 16 26 C 0.11 2.25 6.34 86.35 0.55 2.80 16 27 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 28 H 0.11 3.93 7.69 -2.40 -0.02 3.91 16 29 H 0.11 4.02 7.94 -2.39 -0.02 4.00 16 30 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.08 2.31 7.01 -2.39 -0.02 2.29 16 32 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.10 1.84 6.98 -2.39 -0.02 1.82 16 35 H 0.20 0.20 8.06 -2.91 -0.02 0.18 16 36 H 0.19 -0.52 8.06 -2.91 -0.02 -0.55 16 37 H 0.18 0.66 8.06 -2.91 -0.02 0.64 16 38 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.10 1.97 5.93 -2.39 -0.01 1.96 16 Total: -1.00 -81.84 363.03 2.79 -79.05 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 1.06 Total: 11.23 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: 5.83 Total: -2.60 kcal Atomic # 7 Polarization: -81.54 SS G_CDS: -4.82 Total: -86.36 kcal Atomic # 8 Polarization: -34.07 SS G_CDS: -0.92 Total: -34.98 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.77 Total: -2.40 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.75 kcal Total: -81.84 2.79 -79.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278486409.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.149 kcal (2) G-P(sol) polarization free energy of solvation -81.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds