Wall clock time and date at job start Sat Apr 11 2020 05:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86799 * 119.99900 * 2 1 4 4 H 1.48498 * 109.47061 * 275.40945 * 3 2 1 5 5 H 1.48504 * 109.47339 * 35.41071 * 3 2 1 6 6 H 1.48496 * 109.47060 * 155.40831 * 3 2 1 7 7 C 1.39937 * 119.99964 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00017 * 341.72817 * 7 2 1 9 9 C 1.41400 * 119.99892 * 161.73548 * 7 2 1 10 10 C 1.40774 * 120.21700 * 330.19619 * 9 7 2 11 11 C 1.37623 * 119.85505 * 180.02562 * 10 9 7 12 12 C 1.38561 * 120.30835 * 359.72383 * 11 10 9 13 13 C 1.39118 * 120.44316 * 0.55264 * 12 11 10 14 14 O 1.35894 * 119.93476 * 179.71647 * 13 12 11 15 15 S 1.52195 * 114.00414 * 269.72869 * 14 13 12 16 16 O 1.42101 * 104.27853 * 191.07211 * 15 14 13 17 17 O 1.42095 * 104.27833 * 318.92875 * 15 14 13 18 18 C 1.81402 * 104.44750 * 75.00287 * 15 14 13 19 19 C 1.52996 * 109.47212 * 180.02562 * 18 15 14 20 20 C 1.52998 * 109.47466 * 179.97438 * 19 18 15 21 21 C 1.53180 * 109.54501 * 294.55850 * 20 19 18 22 22 C 1.53093 * 109.16151 * 183.15071 * 21 20 19 23 23 O 1.42901 * 109.41763 * 57.60772 * 22 21 20 24 24 C 1.42907 * 114.09677 * 298.83985 * 23 22 21 25 25 C 1.53088 * 109.41266 * 61.15644 * 24 23 22 26 26 C 1.38137 * 120.13346 * 359.44834 * 13 12 11 27 27 H 0.96997 * 120.00477 * 0.02562 * 1 2 3 28 28 H 1.07998 * 120.06543 * 0.02562 * 10 9 7 29 29 H 1.08001 * 119.84332 * 180.02562 * 11 10 9 30 30 H 1.08001 * 119.78269 * 180.29396 * 12 11 10 31 31 H 1.09007 * 109.47036 * 300.00069 * 18 15 14 32 32 H 1.08996 * 109.47578 * 59.99690 * 18 15 14 33 33 H 1.08997 * 109.47108 * 299.99807 * 19 18 15 34 34 H 1.09008 * 109.47221 * 59.99737 * 19 18 15 35 35 H 1.09001 * 109.54123 * 54.82281 * 20 19 18 36 36 H 1.08999 * 109.51822 * 303.05168 * 21 20 19 37 37 H 1.08994 * 109.51962 * 63.24445 * 21 20 19 38 38 H 1.08997 * 109.48124 * 297.61961 * 22 21 20 39 39 H 1.08999 * 109.47773 * 177.59110 * 22 21 20 40 40 H 1.08997 * 109.47652 * 301.17279 * 24 23 22 41 41 H 1.08996 * 109.48709 * 181.14778 * 24 23 22 42 42 H 1.09003 * 109.51993 * 182.48059 * 25 24 23 43 43 H 1.09005 * 109.52510 * 62.30249 * 25 24 23 44 44 H 1.08001 * 120.15512 * 180.24930 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3754 2.1124 -1.3938 5 1 1.5015 2.6170 0.8113 6 1 3.5922 1.4099 0.5826 7 6 2.0080 -1.2119 0.0005 8 1 1.5088 -2.1235 0.2942 9 6 3.3685 -1.2429 -0.3832 10 6 3.8631 -0.3112 -1.3155 11 6 5.1885 -0.3485 -1.6841 12 6 6.0399 -1.2952 -1.1376 13 6 5.5634 -2.2256 -0.2196 14 8 6.4062 -3.1532 0.3056 15 16 6.4772 -4.4473 -0.4922 16 8 7.1844 -5.3428 0.3548 17 8 5.1305 -4.7026 -0.8666 18 6 7.4742 -4.0273 -1.9483 19 6 7.6192 -5.2617 -2.8405 20 6 8.4594 -4.9073 -4.0690 21 6 7.7068 -3.8860 -4.9274 22 6 8.5191 -3.5970 -6.1925 23 8 8.7434 -4.8170 -6.9020 24 6 9.4842 -5.7924 -6.1657 25 6 8.7107 -6.1695 -4.8995 26 6 4.2363 -2.2048 0.1634 27 1 -0.4851 0.8400 -0.0004 28 1 3.2037 0.4311 -1.7404 29 1 5.5678 0.3666 -2.3991 30 1 7.0796 -1.3138 -1.4294 31 1 6.9829 -3.2309 -2.5075 32 1 8.4607 -3.6916 -1.6288 33 1 8.1102 -6.0583 -2.2816 34 1 6.6324 -5.5970 -3.1601 35 1 9.4124 -4.4854 -3.7495 36 1 6.7330 -4.2900 -5.2041 37 1 7.5724 -2.9637 -4.3622 38 1 9.4767 -3.1555 -5.9167 39 1 7.9682 -2.9032 -6.8275 40 1 10.4544 -5.3796 -5.8896 41 1 9.6287 -6.6801 -6.7814 42 1 9.2942 -6.8804 -4.3145 43 1 7.7572 -6.6197 -5.1756 44 1 3.8669 -2.9243 0.8791 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292333636.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:11 Heat of formation + Delta-G solvation = -152.450526 kcal Electronic energy + Delta-G solvation = -27899.023689 eV Core-core repulsion = 23908.244611 eV Total energy + Delta-G solvation = -3990.779079 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.24542 -39.72259 -37.22890 -36.85591 -35.96932 -35.75322 -33.74074 -31.64263 -31.15931 -30.65321 -29.46010 -26.12636 -25.43247 -23.82429 -22.94097 -22.27270 -21.07386 -20.33446 -19.92198 -18.30125 -17.50788 -16.95212 -16.52196 -16.31920 -16.21942 -15.94914 -15.48811 -15.01832 -14.91509 -14.72241 -14.59979 -14.17448 -13.68110 -13.25854 -13.01301 -12.92409 -12.76508 -12.58973 -12.44258 -12.36754 -12.13231 -11.90693 -11.81348 -11.72956 -11.61917 -11.57040 -11.26010 -11.21405 -10.90497 -10.70679 -10.68257 -10.62519 -10.35937 -10.08227 -9.85307 -9.73083 -9.41542 -8.05448 -7.92019 -7.17368 -4.74405 0.39863 2.07054 2.29867 2.64373 2.94973 3.07563 3.16260 3.62647 3.79466 3.85011 4.15055 4.24048 4.29888 4.41877 4.50118 4.69935 4.76346 4.84715 4.99104 5.07579 5.10776 5.19908 5.22766 5.38195 5.42428 5.50096 5.57617 5.60320 5.66329 5.71998 5.78847 5.80848 5.86606 5.92909 6.10968 6.19312 6.38743 6.48107 6.87005 6.93278 7.02398 7.14013 7.25727 7.56007 7.75130 8.11086 8.32063 8.52306 9.83543 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.014589 B = 0.003240 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.757936 B = 8639.406348 C = 9774.848769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.082 3.918 3 Si 0.911 3.089 4 H -0.266 1.266 5 H -0.287 1.287 6 H -0.241 1.241 7 C -0.431 4.431 8 H 0.099 0.901 9 C 0.099 3.901 10 C -0.230 4.230 11 C -0.058 4.058 12 C -0.268 4.268 13 C 0.089 3.911 14 O -0.666 6.666 15 S 2.596 3.404 16 O -0.948 6.948 17 O -0.943 6.943 18 C -0.657 4.657 19 C -0.103 4.103 20 C -0.081 4.081 21 C -0.158 4.158 22 C 0.061 3.939 23 O -0.385 6.385 24 C 0.061 3.939 25 C -0.156 4.156 26 C -0.168 4.168 27 H 0.290 0.710 28 H 0.110 0.890 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.144 0.856 32 H 0.132 0.868 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.049 0.951 39 H 0.095 0.905 40 H 0.049 0.951 41 H 0.093 0.907 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.486 -4.676 -9.377 18.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.139 4.139 3 Si 0.737 3.263 4 H -0.192 1.192 5 H -0.214 1.214 6 H -0.164 1.164 7 C -0.458 4.458 8 H 0.117 0.883 9 C 0.095 3.905 10 C -0.250 4.250 11 C -0.077 4.077 12 C -0.289 4.289 13 C 0.048 3.952 14 O -0.626 6.626 15 S 2.691 3.309 16 O -0.947 6.947 17 O -0.942 6.942 18 C -0.783 4.783 19 C -0.141 4.141 20 C -0.100 4.100 21 C -0.196 4.196 22 C -0.016 4.016 23 O -0.303 6.303 24 C -0.016 4.016 25 C -0.193 4.193 26 C -0.190 4.190 27 H 0.101 0.899 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.162 0.838 32 H 0.150 0.850 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.067 0.933 39 H 0.113 0.887 40 H 0.067 0.933 41 H 0.111 0.889 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 14.870 -4.996 -8.888 18.030 hybrid contribution 0.792 1.013 -0.062 1.287 sum 15.662 -3.982 -8.949 18.473 Atomic orbital electron populations 1.69678 1.08185 1.30826 1.32677 1.26244 0.94832 1.01972 0.90832 0.86295 0.81479 0.79389 0.79144 1.19231 1.21365 1.16445 1.19599 0.92658 0.96552 1.36988 0.88341 1.17532 0.92919 0.90227 0.89811 1.21198 0.95843 1.04619 1.03333 1.20408 0.93246 0.96349 0.97692 1.20355 0.99375 1.02607 1.06583 1.17998 0.87720 0.91102 0.98362 1.85584 1.68664 1.42953 1.65444 1.05430 0.75496 0.74172 0.75765 1.93578 1.76112 1.61460 1.63503 1.93675 1.32920 1.83479 1.84079 1.30936 1.17050 1.09166 1.21098 1.21322 1.02241 0.94635 0.95941 1.21136 0.98962 0.95794 0.94112 1.22359 1.00272 1.00297 0.96672 1.22597 0.98884 0.86437 0.93658 1.87936 1.75433 1.25613 1.41351 1.22560 0.93643 0.92263 0.93095 1.22303 1.02150 0.97877 0.97006 1.21194 0.90477 1.03923 1.03445 0.89940 0.87269 0.87337 0.87338 0.83832 0.84952 0.90288 0.89943 0.90621 0.90392 0.90136 0.93287 0.88707 0.93300 0.88909 0.90589 0.90555 0.86442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.86 13.93 55.55 0.77 -19.08 16 2 C 0.08 2.03 5.40 -17.34 -0.09 1.94 16 3 Si 0.91 19.17 24.52 -169.99 -4.17 15.00 16 4 H -0.27 -5.33 6.71 56.52 0.38 -4.95 16 5 H -0.29 -5.84 7.11 56.52 0.40 -5.43 16 6 H -0.24 -5.19 6.86 56.52 0.39 -4.80 16 7 C -0.43 -11.10 9.57 -37.74 -0.36 -11.46 16 8 H 0.10 2.68 8.06 -52.49 -0.42 2.25 16 9 C 0.10 2.39 5.10 -106.84 -0.55 1.85 16 10 C -0.23 -5.06 7.18 -38.85 -0.28 -5.34 16 11 C -0.06 -1.11 10.02 -39.69 -0.40 -1.51 16 12 C -0.27 -4.95 8.47 -39.14 -0.33 -5.28 16 13 C 0.09 1.85 4.79 -39.29 -0.19 1.66 16 14 O -0.67 -12.66 10.04 -51.73 -0.52 -13.18 16 15 S 2.60 43.87 5.17 -107.50 -0.56 43.31 16 16 O -0.95 -17.73 18.09 -67.04 -1.21 -18.94 16 17 O -0.94 -19.01 16.25 -67.04 -1.09 -20.10 16 18 C -0.66 -7.82 5.23 37.16 0.19 -7.63 16 19 C -0.10 -1.08 4.69 -26.73 -0.13 -1.21 16 20 C -0.08 -0.73 2.27 -90.44 -0.21 -0.94 16 21 C -0.16 -1.51 5.10 -26.59 -0.14 -1.64 16 22 C 0.06 0.55 6.84 37.21 0.25 0.80 16 23 O -0.38 -4.03 10.77 -35.23 -0.38 -4.41 16 24 C 0.06 0.49 6.84 37.20 0.25 0.75 16 25 C -0.16 -1.26 5.42 -26.60 -0.14 -1.40 16 26 C -0.17 -3.94 8.78 -38.72 -0.34 -4.28 16 27 H 0.29 6.52 8.30 -40.82 -0.34 6.18 16 28 H 0.11 2.34 4.73 -52.49 -0.25 2.09 16 29 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 30 H 0.11 1.60 7.51 -52.49 -0.39 1.21 16 31 H 0.14 1.68 5.14 -51.92 -0.27 1.41 16 32 H 0.13 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 0.74 6.75 -51.93 -0.35 0.39 16 38 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.12 2.72 8.06 -52.49 -0.42 2.30 16 LS Contribution 361.31 15.07 5.44 5.44 Total: -1.00 -30.30 361.31 -10.50 -40.80 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -6.35 Total: 4.85 kcal Atomic # 6 Polarization: -31.26 SS G_CDS: -2.44 Total: -33.71 kcal Atomic # 7 Polarization: -19.86 SS G_CDS: 0.77 Total: -19.08 kcal Atomic # 8 Polarization: -53.42 SS G_CDS: -3.20 Total: -56.62 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -4.17 Total: 15.00 kcal Atomic # 16 Polarization: 43.87 SS G_CDS: -0.56 Total: 43.31 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.30 -10.50 -40.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292333636.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.650 kcal (2) G-P(sol) polarization free energy of solvation -30.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds