Wall clock time and date at job start Sat Apr 11 2020 05:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00154 * 2 1 4 4 H 1.48500 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47113 * 300.00274 * 3 2 1 6 6 H 1.48502 * 109.46685 * 59.99964 * 3 2 1 7 7 C 1.38818 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99906 * 197.36818 * 7 2 1 9 9 N 1.36938 * 119.99919 * 17.36889 * 7 2 1 10 10 C 1.46927 * 120.63058 * 27.67806 * 9 7 2 11 11 C 1.53192 * 108.77698 * 126.38869 * 10 9 7 12 12 C 1.53044 * 109.31315 * 54.63062 * 11 10 9 13 13 C 1.53039 * 109.54013 * 298.63968 * 12 11 10 14 14 H 1.08997 * 109.49372 * 301.37854 * 13 12 11 15 15 C 1.53000 * 109.49448 * 181.31471 * 13 12 11 16 16 N 1.46509 * 109.46780 * 175.06635 * 15 13 12 17 17 C 1.34779 * 119.99481 * 180.02562 * 16 15 13 18 18 O 1.21557 * 120.00351 * 359.97438 * 17 16 15 19 19 C 1.47774 * 119.99218 * 180.02562 * 17 16 15 20 20 C 1.39606 * 120.14907 * 359.97438 * 19 17 16 21 21 C 1.38124 * 119.84172 * 180.02562 * 20 19 17 22 22 F 1.35103 * 119.93437 * 180.27966 * 21 20 19 23 23 C 1.38619 * 120.12838 * 0.02562 * 21 20 19 24 24 C 1.38247 * 120.29223 * 0.02562 * 23 21 20 25 25 C 1.38145 * 120.15874 * 359.97438 * 24 23 21 26 26 Cl 1.73603 * 120.06687 * 179.97438 * 25 24 23 27 27 C 1.46929 * 120.60686 * 207.65451 * 9 7 2 28 28 H 0.96997 * 120.00193 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.58841 * 6.60377 * 10 9 7 30 30 H 1.09002 * 109.70321 * 246.24446 * 10 9 7 31 31 H 1.09003 * 109.50016 * 294.68426 * 11 10 9 32 32 H 1.08996 * 109.50052 * 174.58967 * 11 10 9 33 33 H 1.08993 * 109.45921 * 178.61432 * 12 11 10 34 34 H 1.08999 * 109.44514 * 58.65322 * 12 11 10 35 35 H 1.08999 * 109.47688 * 55.06287 * 15 13 12 36 36 H 1.08998 * 109.46921 * 295.06191 * 15 13 12 37 37 H 0.97002 * 119.99762 * 359.97438 * 16 15 13 38 38 H 1.08006 * 120.08233 * 359.97438 * 20 19 17 39 39 H 1.08004 * 119.85560 * 180.02562 * 23 21 20 40 40 H 1.07996 * 119.91550 * 180.02562 * 24 23 21 41 41 H 1.08992 * 109.56674 * 113.80756 * 27 9 7 42 42 H 1.09008 * 109.61577 * 353.37686 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3963 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0533 -1.2234 0.2797 9 7 1.3724 -2.3612 -0.3530 10 6 0.2280 -2.3349 -1.2741 11 6 0.5013 -3.3050 -2.4278 12 6 0.8194 -4.6901 -1.8599 13 6 2.0749 -4.6100 -0.9884 14 1 2.9088 -4.2405 -1.5851 15 6 2.4107 -6.0014 -0.4478 16 7 3.6762 -5.9467 0.2885 17 6 4.1738 -7.0629 0.8568 18 8 3.5725 -8.1148 0.7589 19 6 5.4500 -7.0077 1.5999 20 6 6.1428 -5.8011 1.7146 21 6 7.3353 -5.7568 2.4102 22 9 8.0045 -4.5890 2.5272 23 6 7.8442 -6.9071 2.9928 24 6 7.1631 -8.1050 2.8816 25 6 5.9694 -8.1630 2.1887 26 17 5.1165 -9.6687 2.0501 27 6 1.8201 -3.6545 0.1816 28 1 -0.4850 0.8400 -0.0004 29 1 0.0986 -1.3267 -1.6675 30 1 -0.6756 -2.6401 -0.7464 31 1 1.3500 -2.9473 -3.0108 32 1 -0.3793 -3.3673 -3.0671 33 1 0.9901 -5.3881 -2.6794 34 1 -0.0198 -5.0365 -1.2567 35 1 2.5034 -6.7013 -1.2781 36 1 1.6159 -6.3332 0.2202 37 1 4.1562 -5.1074 0.3662 38 1 5.7478 -4.9046 1.2599 39 1 8.7768 -6.8673 3.5360 40 1 7.5649 -8.9974 3.3383 41 1 1.0480 -4.0685 0.8300 42 1 2.7412 -3.5172 0.7482 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295768204.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:14 Heat of formation + Delta-G solvation = -40.894893 kcal Electronic energy + Delta-G solvation = -26879.054232 eV Core-core repulsion = 22799.901309 eV Total energy + Delta-G solvation = -4079.152924 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.28172 -40.42160 -38.69224 -37.70780 -36.58732 -34.91594 -33.16728 -32.03178 -30.61274 -30.48447 -30.18021 -25.95067 -25.31569 -24.20939 -22.97338 -22.14625 -21.08767 -20.67793 -19.24647 -18.49408 -17.19262 -16.95218 -16.76420 -16.18508 -16.05522 -15.57414 -15.36885 -14.88156 -14.73894 -14.33971 -13.90635 -13.82212 -13.66353 -13.46080 -13.25829 -12.88786 -12.80431 -12.38374 -12.23687 -12.20310 -12.00187 -11.52915 -11.39825 -11.30716 -11.04835 -10.75129 -10.52412 -10.25120 -10.20995 -9.96800 -9.76082 -9.70986 -9.55884 -9.45651 -9.07481 -8.90113 -8.50266 -6.71849 -5.82779 -3.25527 0.20475 0.54203 1.85393 2.48528 3.02764 3.31070 3.34027 3.42232 3.43774 3.71005 4.11612 4.24486 4.44804 4.57227 4.69599 4.98126 5.08644 5.17966 5.25901 5.38656 5.39816 5.41930 5.50506 5.56957 5.60168 5.79284 5.90477 5.95804 6.15894 6.19090 6.27679 6.33525 6.41212 6.54941 6.66377 6.72837 6.82240 6.91747 7.36567 7.43644 7.64301 7.75089 8.11333 8.40314 9.16828 9.80372 10.36870 11.25460 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.012271 B = 0.003076 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.235137 B = 9100.271822 C =11056.189095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.003 3.997 3 Si 0.901 3.099 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.255 4.255 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.169 3.831 11 C -0.142 4.142 12 C -0.099 4.099 13 C -0.119 4.119 14 H 0.073 0.927 15 C 0.128 3.872 16 N -0.716 5.716 17 C 0.550 3.450 18 O -0.515 6.515 19 C -0.096 4.096 20 C -0.110 4.110 21 C 0.100 3.900 22 F -0.129 7.129 23 C -0.120 4.120 24 C -0.092 4.092 25 C -0.001 4.001 26 Cl -0.023 7.023 27 C 0.154 3.846 28 H 0.253 0.747 29 H 0.087 0.913 30 H 0.018 0.982 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.047 0.953 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.401 0.599 38 H 0.151 0.849 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.019 0.981 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.636 -16.036 2.922 21.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.195 4.195 3 Si 0.731 3.269 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.384 4.384 8 H 0.083 0.917 9 N -0.314 5.314 10 C 0.043 3.957 11 C -0.181 4.181 12 C -0.137 4.137 13 C -0.139 4.139 14 H 0.092 0.908 15 C 0.005 3.995 16 N -0.368 5.368 17 C 0.336 3.664 18 O -0.391 6.391 19 C -0.100 4.100 20 C -0.130 4.130 21 C 0.080 3.920 22 F -0.108 7.108 23 C -0.139 4.139 24 C -0.111 4.111 25 C -0.029 4.029 26 Cl 0.007 6.993 27 C 0.027 3.973 28 H 0.064 0.936 29 H 0.105 0.895 30 H 0.036 0.964 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.237 0.763 38 H 0.169 0.831 39 H 0.167 0.833 40 H 0.167 0.833 41 H 0.037 0.963 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 13.000 -16.716 2.839 21.366 hybrid contribution 0.719 1.519 0.090 1.683 sum 13.719 -15.197 2.929 20.682 Atomic orbital electron populations 1.70047 1.05284 1.25435 1.53704 1.25032 0.95261 0.98413 1.00836 0.86254 0.79366 0.84014 0.77315 1.20246 1.21532 1.21717 1.19198 0.92665 0.84865 1.41711 0.91694 1.44045 1.35876 1.01152 1.50293 1.20800 0.88503 0.98455 0.87952 1.22171 1.00126 0.95916 0.99874 1.21334 0.96655 0.97786 0.97954 1.21973 0.98964 0.93501 0.99507 0.90826 1.21520 0.84307 0.98187 0.95489 1.46017 1.25049 1.11136 1.54588 1.17909 0.84428 0.84443 0.79655 1.90873 1.59900 1.28960 1.59363 1.19700 0.96822 0.92326 1.01161 1.21369 0.93958 0.98447 0.99199 1.17549 0.92062 0.82216 1.00141 1.91572 1.79376 1.45579 1.94225 1.21303 1.01421 0.90990 1.00223 1.20925 0.93030 0.98685 0.98452 1.21058 0.94237 0.88640 0.98958 1.98432 1.76281 1.28364 1.96250 1.20900 0.97435 0.86918 0.92080 0.93648 0.89522 0.96433 0.92748 0.93144 0.93381 0.92420 0.91620 0.91219 0.76262 0.83139 0.83297 0.83252 0.96264 0.93289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.70 11.19 55.49 0.62 -25.08 16 2 C 0.00 0.09 4.91 -17.43 -0.09 0.01 16 3 Si 0.90 21.22 29.59 -169.99 -5.03 16.19 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 7 C -0.25 -6.75 9.58 -15.06 -0.14 -6.90 16 8 H 0.07 1.67 7.89 -52.49 -0.41 1.26 16 9 N -0.59 -14.20 3.00 -172.31 -0.52 -14.72 16 10 C 0.17 3.91 5.31 -3.71 -0.02 3.89 16 11 C -0.14 -2.60 6.08 -26.61 -0.16 -2.76 16 12 C -0.10 -1.57 5.17 -26.69 -0.14 -1.71 16 13 C -0.12 -1.87 2.37 -90.50 -0.21 -2.08 16 14 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 15 C 0.13 1.78 5.07 -4.04 -0.02 1.76 16 16 N -0.72 -9.17 5.28 -61.27 -0.32 -9.49 16 17 C 0.55 7.48 7.76 -12.36 -0.10 7.39 16 18 O -0.51 -8.32 13.96 5.32 0.07 -8.24 16 19 C -0.10 -1.09 5.88 -104.95 -0.62 -1.71 16 20 C -0.11 -1.09 9.52 -39.11 -0.37 -1.46 16 21 C 0.10 0.93 7.29 -39.48 -0.29 0.64 16 22 F -0.13 -1.33 17.26 2.25 0.04 -1.29 16 23 C -0.12 -0.88 10.02 -39.44 -0.40 -1.27 16 24 C -0.09 -0.71 9.81 -39.61 -0.39 -1.09 16 25 C 0.00 -0.01 6.35 -39.07 -0.25 -0.26 16 26 Cl -0.02 -0.27 26.02 -51.86 -1.35 -1.62 16 27 C 0.15 2.99 5.60 -3.71 -0.02 2.97 16 28 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.09 2.27 6.04 -51.93 -0.31 1.95 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.40 4.60 5.73 -40.82 -0.23 4.37 16 38 H 0.15 1.33 6.41 -52.48 -0.34 1.00 16 39 H 0.15 0.69 8.06 -52.48 -0.42 0.27 16 40 H 0.15 0.76 8.06 -52.49 -0.42 0.33 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.05 0.91 7.14 -51.92 -0.37 0.54 16 LS Contribution 359.24 15.07 5.41 5.41 Total: -1.00 -30.69 359.24 -9.73 -40.43 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -5.45 Total: 1.01 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -3.21 Total: -2.59 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: -0.22 Total: -49.30 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.07 Total: -8.24 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -1.35 Total: -1.62 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.69 -9.73 -40.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295768204.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.467 kcal (2) G-P(sol) polarization free energy of solvation -30.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds