Wall clock time and date at job start Sat Apr 11 2020 05:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86799 * 119.99849 * 2 1 4 4 H 1.48495 * 109.47540 * 240.00304 * 3 2 1 5 5 H 1.48500 * 109.47349 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46943 * 120.00158 * 3 2 1 7 7 C 1.38802 * 120.00177 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99862 * 179.97438 * 7 2 1 9 9 S 1.76197 * 119.99673 * 359.97438 * 7 2 1 10 10 C 1.81007 * 99.99883 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47042 * 180.02562 * 10 9 7 12 12 O 1.21273 * 120.00028 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99737 * 180.02562 * 11 10 9 14 14 C 1.46964 * 120.59288 * 179.97438 * 13 11 10 15 15 C 1.53374 * 108.63589 * 235.24347 * 14 13 11 16 16 N 1.46963 * 108.63691 * 310.57928 * 15 14 13 17 17 C 1.34777 * 120.59386 * 235.20446 * 16 15 14 18 18 O 1.21274 * 120.00135 * 0.27313 * 17 16 15 19 19 C 1.50706 * 119.99766 * 179.97438 * 17 16 15 20 20 N 1.46500 * 109.46949 * 179.97438 * 19 17 16 21 21 C 1.34593 * 126.43882 * 124.71195 * 20 19 17 22 22 N 1.31079 * 106.68029 * 179.87822 * 21 20 19 23 23 N 1.28844 * 107.98726 * 0.38782 * 22 21 20 24 24 N 1.28738 * 109.39875 * 359.75074 * 23 22 21 25 25 C 1.46968 * 118.81077 * 55.47157 * 16 15 14 26 26 C 1.46973 * 120.59419 * 0.02562 * 13 11 10 27 27 H 0.97003 * 120.00140 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.46873 * 59.99332 * 10 9 7 29 29 H 1.08999 * 109.46688 * 300.00025 * 10 9 7 30 30 H 1.09000 * 109.60599 * 115.50580 * 14 13 11 31 31 H 1.08994 * 109.60989 * 354.99164 * 14 13 11 32 32 H 1.08994 * 109.60933 * 190.83073 * 15 14 13 33 33 H 1.08997 * 109.74815 * 70.40256 * 15 14 13 34 34 H 1.09000 * 109.47161 * 299.99737 * 19 17 16 35 35 H 1.09001 * 109.46740 * 59.99879 * 19 17 16 36 36 H 1.08002 * 126.65879 * 0.02562 * 21 20 19 37 37 H 1.09004 * 109.60917 * 64.27446 * 25 16 15 38 38 H 1.09008 * 109.60767 * 184.77975 * 25 16 15 39 39 H 1.08997 * 109.60526 * 244.50045 * 26 13 11 40 40 H 1.09000 * 109.60597 * 5.00342 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6966 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7913 -5.5022 -0.0011 13 7 2.8442 -6.3431 -0.0008 14 6 2.3432 -7.7247 -0.0008 15 6 2.9545 -8.4678 1.1935 16 7 4.4066 -8.2409 1.1945 17 6 5.2633 -9.2813 1.1957 18 8 4.8381 -10.4171 1.1910 19 6 6.7498 -9.0332 1.1961 20 7 7.4588 -10.3153 1.1981 21 6 8.3857 -10.7175 0.3090 22 7 8.7637 -11.9177 0.6765 23 7 8.0973 -12.2391 1.7313 24 7 7.3079 -11.2731 2.0493 25 6 4.9076 -6.8593 1.2001 26 6 4.2964 -6.1162 0.0009 27 1 -0.4850 0.8401 0.0004 28 1 3.1246 -3.7313 0.8894 29 1 3.1245 -3.7313 -0.8905 30 1 2.6345 -8.2193 -0.9274 31 1 1.2569 -7.7198 0.0884 32 1 2.7510 -9.5348 1.1036 33 1 2.5248 -8.0903 2.1213 34 1 7.0240 -8.4674 0.3058 35 1 7.0232 -8.4659 2.0858 36 1 8.7494 -10.1589 -0.5408 37 1 4.6132 -6.3672 2.1272 38 1 5.9943 -6.8639 1.1146 39 1 4.7269 -6.4961 -0.9256 40 1 4.4998 -5.0492 0.0911 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330480388.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:29 Heat of formation + Delta-G solvation = 78.490632 kcal Electronic energy + Delta-G solvation = -26428.055680 eV Core-core repulsion = 22408.336120 eV Total energy + Delta-G solvation = -4019.719560 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.110 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.56506 -41.00197 -39.57042 -37.32865 -35.92737 -34.41034 -32.86871 -32.53526 -32.38886 -29.94166 -29.61413 -27.49800 -25.60214 -24.48249 -24.24798 -23.94921 -22.77663 -20.73233 -19.15689 -18.50110 -18.19558 -17.65151 -17.08187 -16.72627 -16.50925 -16.23260 -16.08970 -15.80286 -15.66191 -14.90400 -14.63471 -14.46606 -14.14575 -13.97656 -13.52432 -13.48960 -13.13012 -12.93489 -12.65017 -12.52647 -12.12104 -12.09025 -11.99711 -11.74152 -11.60819 -11.52392 -11.15741 -11.12976 -10.86629 -10.83018 -10.43391 -9.93258 -9.73253 -9.58320 -9.16370 -8.68032 -8.36601 -6.63140 -6.31957 -4.04154 0.79741 1.30481 1.77458 1.90571 2.16779 2.71116 2.81663 3.14822 3.14916 3.21150 3.36926 3.40526 3.63646 3.75856 4.02028 4.08843 4.17701 4.26218 4.31717 4.54136 4.65324 4.79295 4.87870 4.96987 4.98973 5.03328 5.16532 5.24808 5.25645 5.36047 5.49764 5.57067 5.57677 5.67548 5.82684 5.90826 6.28062 6.57970 7.24968 7.34053 7.48028 8.22606 8.23546 8.30775 9.13066 10.75255 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.024141 B = 0.002069 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.583990 B =13528.451956 C =14434.031721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.152 4.152 11 C 0.536 3.464 12 O -0.509 6.509 13 N -0.623 5.623 14 C 0.101 3.899 15 C 0.100 3.900 16 N -0.604 5.604 17 C 0.505 3.495 18 O -0.509 6.509 19 C 0.096 3.904 20 N -0.302 5.302 21 C 0.161 3.839 22 N -0.306 5.306 23 N -0.077 5.077 24 N -0.063 5.063 25 C 0.085 3.915 26 C 0.094 3.906 27 H 0.270 0.730 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.109 0.891 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.145 0.855 35 H 0.137 0.863 36 H 0.236 0.764 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.074 0.926 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.859 -13.998 0.170 21.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.686 4.686 8 H 0.090 0.910 9 S 0.168 5.832 10 C -0.302 4.302 11 C 0.324 3.676 12 O -0.382 6.382 13 N -0.361 5.361 14 C -0.023 4.023 15 C -0.023 4.023 16 N -0.339 5.339 17 C 0.289 3.711 18 O -0.383 6.383 19 C -0.030 4.030 20 N -0.105 5.105 21 C -0.137 4.137 22 N -0.153 5.153 23 N -0.071 5.071 24 N -0.050 5.050 25 C -0.039 4.039 26 C -0.030 4.030 27 H 0.080 0.920 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.088 0.912 31 H 0.127 0.873 32 H 0.123 0.877 33 H 0.099 0.901 34 H 0.163 0.837 35 H 0.155 0.845 36 H 0.252 0.748 37 H 0.107 0.893 38 H 0.113 0.887 39 H 0.093 0.907 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 14.633 -15.959 0.991 21.675 hybrid contribution 1.989 2.436 -0.630 3.207 sum 16.622 -13.522 0.361 21.430 Atomic orbital electron populations 1.70000 1.05971 1.27715 1.46409 1.25001 0.95040 0.99076 0.94431 0.86220 0.79256 0.81215 0.78784 1.19915 1.20775 1.19919 1.22787 0.94793 0.91549 1.59492 0.90954 1.85493 1.04638 0.96369 1.96716 1.23559 1.06777 0.95225 1.04688 1.20418 0.86221 0.86162 0.74793 1.90715 1.15128 1.85054 1.47348 1.48066 1.05981 1.05840 1.76182 1.21911 1.01608 0.81312 0.97458 1.22142 0.77916 1.02711 0.99507 1.47994 1.07092 1.05782 1.73032 1.20117 0.87589 0.85503 0.77884 1.90859 1.78052 1.21333 1.48052 1.22078 0.91328 0.81100 1.08515 1.48190 1.28145 1.14857 1.19267 1.27774 0.92576 0.94742 0.98657 1.75016 1.21701 1.10145 1.08440 1.78700 1.03162 1.17556 1.07723 1.79036 1.17883 0.93605 1.14437 1.22448 0.99229 0.81472 1.00706 1.22156 0.81001 1.02286 0.97599 0.92017 0.89168 0.89167 0.91224 0.87291 0.87653 0.90137 0.83720 0.84488 0.74771 0.89325 0.88749 0.90727 0.87504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.01 13.22 55.49 0.73 -24.28 16 2 C 0.07 2.01 5.49 -17.43 -0.10 1.91 16 3 Si 0.92 20.21 29.55 -169.99 -5.02 15.19 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.54 -14.30 9.50 30.94 0.29 -14.00 16 8 H 0.07 1.78 7.80 -52.49 -0.41 1.38 16 9 S -0.06 -1.48 20.57 -107.50 -2.21 -3.69 16 10 C -0.15 -2.64 4.50 36.00 0.16 -2.48 16 11 C 0.54 8.65 7.72 -10.99 -0.08 8.56 16 12 O -0.51 -10.44 15.27 5.56 0.08 -10.36 16 13 N -0.62 -6.75 2.95 -172.25 -0.51 -7.25 16 14 C 0.10 0.97 6.59 -3.60 -0.02 0.95 16 15 C 0.10 0.82 6.59 -3.60 -0.02 0.80 16 16 N -0.60 -3.82 2.94 -172.25 -0.51 -4.33 16 17 C 0.50 3.65 7.71 -10.98 -0.08 3.56 16 18 O -0.51 -6.26 15.11 5.56 0.08 -6.18 16 19 C 0.10 0.28 5.31 -5.19 -0.03 0.25 16 20 N -0.30 -2.17 3.19 -63.73 -0.20 -2.37 16 21 C 0.16 0.97 12.79 -90.39 -1.16 -0.19 16 22 N -0.31 -3.28 12.36 29.59 0.37 -2.91 16 23 N -0.08 -1.01 13.43 60.35 0.81 -0.20 16 24 N -0.06 -0.74 12.29 60.35 0.74 0.00 16 25 C 0.09 0.32 6.53 -3.40 -0.02 0.30 16 26 C 0.09 0.58 6.52 -3.39 -0.02 0.55 16 27 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 28 H 0.09 1.38 7.72 -51.92 -0.40 0.98 16 29 H 0.09 1.42 7.91 -51.92 -0.41 1.01 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.11 1.25 6.99 -51.93 -0.36 0.89 16 32 H 0.11 0.95 6.99 -51.93 -0.36 0.58 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.15 -0.26 7.67 -51.93 -0.40 -0.66 16 35 H 0.14 0.06 7.90 -51.93 -0.41 -0.35 16 36 H 0.24 0.00 8.06 -52.49 -0.42 -0.42 16 37 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.09 -0.05 5.91 -51.92 -0.31 -0.35 16 39 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.11 0.64 5.91 -51.93 -0.31 0.33 16 LS Contribution 355.21 15.07 5.35 5.35 Total: -1.00 -40.81 355.21 -5.98 -46.80 By element: Atomic # 1 Polarization: -1.38 SS G_CDS: -4.62 Total: -6.00 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -1.08 Total: 0.22 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: 1.43 Total: -41.33 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: 0.17 Total: -16.53 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 16 Polarization: -1.48 SS G_CDS: -2.21 Total: -3.69 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -40.81 -5.98 -46.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330480388.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.287 kcal (2) G-P(sol) polarization free energy of solvation -40.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds