Wall clock time and date at job start Sat Apr 11 2020 05:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86793 * 120.00507 * 2 1 4 4 H 1.48502 * 109.47323 * 274.35143 * 3 2 1 5 5 H 1.48497 * 109.47157 * 34.35364 * 3 2 1 6 6 H 1.48496 * 109.47300 * 154.35181 * 3 2 1 7 7 C 1.38823 * 119.99601 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99818 * 162.59686 * 7 2 1 9 9 N 1.36929 * 119.99710 * 342.59309 * 7 2 1 10 10 C 1.46932 * 120.62923 * 152.28799 * 9 7 2 11 11 C 1.53193 * 108.89365 * 126.33970 * 10 9 7 12 12 C 1.53349 * 109.14947 * 54.58000 * 11 10 9 13 13 C 1.52995 * 109.42091 * 178.67009 * 12 11 10 14 14 N 1.46498 * 109.47509 * 295.12909 * 13 12 11 15 15 C 1.34773 * 120.00110 * 179.97438 * 14 13 12 16 16 O 1.21555 * 120.00082 * 0.02562 * 15 14 13 17 17 C 1.47781 * 119.99916 * 180.02562 * 15 14 13 18 18 C 1.39604 * 120.14179 * 359.72530 * 17 15 14 19 19 C 1.38124 * 119.83727 * 179.74136 * 18 17 15 20 20 F 1.35099 * 119.93757 * 180.25606 * 19 18 17 21 21 C 1.38626 * 120.12764 * 0.53235 * 19 18 17 22 22 C 1.38238 * 120.29176 * 359.72642 * 21 19 18 23 23 C 1.38149 * 120.16199 * 0.02562 * 22 21 19 24 24 Cl 1.73594 * 120.07086 * 179.97438 * 23 22 21 25 25 C 1.53038 * 109.60966 * 298.71388 * 12 11 10 26 26 C 1.46927 * 120.63500 * 332.30825 * 9 7 2 27 27 H 0.97000 * 119.99465 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.58789 * 246.20114 * 10 9 7 29 29 H 1.09000 * 109.58152 * 6.48462 * 10 9 7 30 30 H 1.08996 * 109.49449 * 174.66041 * 11 10 9 31 31 H 1.08996 * 109.49932 * 294.75815 * 11 10 9 32 32 H 1.09005 * 109.42157 * 58.74728 * 12 11 10 33 33 H 1.09002 * 109.46902 * 55.13125 * 13 12 11 34 34 H 1.09003 * 109.46943 * 175.12782 * 13 12 11 35 35 H 0.96998 * 119.99866 * 0.02562 * 14 13 12 36 36 H 1.07999 * 120.08307 * 359.97438 * 18 17 15 37 37 H 1.08007 * 119.85429 * 179.69507 * 21 19 18 38 38 H 1.07999 * 119.92048 * 179.97438 * 22 21 19 39 39 H 1.09002 * 109.49898 * 301.42152 * 25 12 11 40 40 H 1.09001 * 109.50239 * 181.32239 * 25 12 11 41 41 H 1.08997 * 109.58712 * 353.38030 * 26 9 7 42 42 H 1.09003 * 109.58223 * 113.65521 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4059 2.0994 -1.3960 5 1 1.4969 2.6243 0.7900 6 1 3.5908 1.4151 0.6060 7 6 2.0102 -1.2023 -0.0005 8 1 3.0531 -1.2236 -0.2803 9 7 1.3724 -2.3611 0.3537 10 6 1.8185 -3.6547 -0.1814 11 6 2.0771 -4.6120 0.9864 12 6 0.8196 -4.6900 1.8607 13 6 1.0597 -5.6701 3.0107 14 7 1.2451 -7.0196 2.4716 15 6 1.4729 -8.0532 3.3060 16 8 1.5240 -7.8658 4.5059 17 6 1.6605 -9.4144 2.7621 18 6 1.5967 -9.6340 1.3850 19 6 1.7783 -10.9079 0.8830 20 9 1.7220 -11.1218 -0.4497 21 6 2.0124 -11.9684 1.7446 22 6 2.0713 -11.7579 3.1096 23 6 1.8965 -10.4879 3.6243 24 17 1.9703 -10.2264 5.3388 25 6 0.5025 -3.3049 2.4290 26 6 0.2288 -2.3345 1.2757 27 1 -0.4849 0.8401 0.0004 28 1 1.0455 -4.0685 -0.8288 29 1 2.7374 -3.5171 -0.7513 30 1 2.3168 -5.6021 0.5989 31 1 2.9115 -4.2421 1.5822 32 1 -0.0201 -5.0361 1.2579 33 1 1.9524 -5.3729 3.5611 34 1 0.2000 -5.6615 3.6808 35 1 1.2047 -7.1691 1.5141 36 1 1.4095 -8.8092 0.7134 37 1 2.1489 -12.9636 1.3476 38 1 2.2537 -12.5885 3.7753 39 1 1.3517 -2.9474 3.0114 40 1 -0.3777 -3.3669 3.0689 41 1 0.1000 -1.3262 1.6692 42 1 -0.6744 -2.6382 0.7463 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340698595.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:05 Heat of formation + Delta-G solvation = -40.148146 kcal Electronic energy + Delta-G solvation = -26568.835830 eV Core-core repulsion = 22489.715288 eV Total energy + Delta-G solvation = -4079.120542 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.40426 -40.51477 -38.77314 -37.72626 -36.66382 -35.05434 -33.11825 -31.97212 -30.72875 -30.68671 -29.72947 -27.03784 -24.83219 -23.89126 -23.01714 -22.25015 -21.16199 -20.77604 -19.25192 -18.63436 -17.30130 -17.05297 -16.76887 -16.33789 -16.16783 -15.63523 -15.37975 -14.92581 -14.77867 -14.12016 -14.00903 -13.88702 -13.68805 -13.52573 -13.31893 -13.08561 -12.95885 -12.39420 -12.35766 -12.10002 -11.90009 -11.61490 -11.44945 -11.36842 -11.00615 -10.72173 -10.54083 -10.26917 -10.24137 -9.96471 -9.80865 -9.77716 -9.57624 -9.45845 -9.15846 -8.98568 -8.47909 -6.69004 -5.80463 -3.22080 0.10939 0.43904 1.77874 2.39467 2.93917 3.21893 3.36494 3.44106 3.46640 3.60044 4.01263 4.14080 4.47306 4.48918 4.59519 4.90806 5.04295 5.09623 5.18157 5.28237 5.34180 5.39383 5.41205 5.49044 5.57831 5.81719 5.89126 6.00053 6.05857 6.09399 6.28864 6.33399 6.41482 6.57376 6.65533 6.72955 6.78250 6.94900 7.32151 7.37634 7.64351 7.78520 8.03236 8.43796 9.20209 9.83889 10.40220 11.28175 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.019444 B = 0.002319 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.716328 B =12071.703730 C =13063.800769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.252 4.252 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.145 3.855 11 C -0.128 4.128 12 C -0.091 4.091 13 C 0.124 3.876 14 N -0.717 5.717 15 C 0.549 3.451 16 O -0.512 6.512 17 C -0.096 4.096 18 C -0.111 4.111 19 C 0.099 3.901 20 F -0.130 7.130 21 C -0.120 4.120 22 C -0.091 4.091 23 C -0.001 4.001 24 Cl -0.021 7.021 25 C -0.132 4.132 26 C 0.171 3.829 27 H 0.254 0.746 28 H 0.016 0.984 29 H 0.053 0.947 30 H 0.046 0.954 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.399 0.601 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.058 0.942 40 H 0.051 0.949 41 H 0.088 0.912 42 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.388 -25.434 5.077 26.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.382 4.382 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.018 3.982 11 C -0.167 4.167 12 C -0.110 4.110 13 C 0.001 3.999 14 N -0.369 5.369 15 C 0.334 3.666 16 O -0.388 6.388 17 C -0.100 4.100 18 C -0.131 4.131 19 C 0.079 3.921 20 F -0.108 7.108 21 C -0.139 4.139 22 C -0.110 4.110 23 C -0.029 4.029 24 Cl 0.009 6.991 25 C -0.172 4.172 26 C 0.045 3.955 27 H 0.064 0.936 28 H 0.034 0.966 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.234 0.766 36 H 0.167 0.833 37 H 0.167 0.833 38 H 0.168 0.832 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.106 0.894 42 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 2.318 -25.076 6.052 25.900 hybrid contribution 0.356 0.727 -0.735 1.093 sum 2.674 -24.349 5.317 25.066 Atomic orbital electron populations 1.70033 1.05272 1.25490 1.53956 1.25030 0.95275 0.98416 1.00970 0.86304 0.79259 0.83755 0.77608 1.21480 1.21538 1.20435 1.19178 0.92699 0.84910 1.41390 0.91752 1.44050 1.35959 1.01349 1.50142 1.20882 0.97520 0.87057 0.92692 1.22139 0.97022 0.98668 0.98881 1.21384 0.98765 0.95519 0.95319 1.21646 1.01828 0.79487 0.96896 1.46031 1.72352 1.08261 1.10244 1.17924 0.78118 0.83884 0.86676 1.90887 1.49355 1.84535 1.14008 1.19716 1.03613 0.94384 0.92303 1.21318 1.00369 0.96793 0.94628 1.17541 1.02649 0.93894 0.77984 1.91564 1.93737 1.95477 1.30053 1.21309 1.00429 0.99419 0.92743 1.20946 0.99478 0.95689 0.94889 1.21079 1.00791 0.93594 0.87424 1.98439 1.95846 1.96751 1.08091 1.22168 1.00412 0.94472 1.00138 1.20770 0.88584 0.98313 0.87808 0.93645 0.96626 0.92895 0.93568 0.92061 0.91269 0.91243 0.91428 0.76570 0.83301 0.83262 0.83195 0.92323 0.92990 0.89356 0.96434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.94 11.19 55.49 0.62 -25.32 16 2 C 0.00 0.04 4.91 -17.43 -0.09 -0.04 16 3 Si 0.90 21.53 29.59 -169.99 -5.03 16.50 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.25 -6.83 9.58 -15.06 -0.14 -6.98 16 8 H 0.06 1.72 7.89 -52.49 -0.41 1.30 16 9 N -0.59 -14.43 3.00 -172.31 -0.52 -14.95 16 10 C 0.15 2.89 6.50 -3.71 -0.02 2.86 16 11 C -0.13 -2.02 5.27 -26.45 -0.14 -2.16 16 12 C -0.09 -1.37 2.19 -90.42 -0.20 -1.57 16 13 C 0.12 1.67 5.06 -4.05 -0.02 1.65 16 14 N -0.72 -8.31 5.22 -61.28 -0.32 -8.63 16 15 C 0.55 6.96 7.76 -12.36 -0.10 6.87 16 16 O -0.51 -8.02 13.96 5.32 0.07 -7.94 16 17 C -0.10 -0.99 5.88 -104.94 -0.62 -1.60 16 18 C -0.11 -0.93 9.52 -39.11 -0.37 -1.30 16 19 C 0.10 0.77 7.29 -39.48 -0.29 0.48 16 20 F -0.13 -1.11 17.26 2.25 0.04 -1.08 16 21 C -0.12 -0.74 10.02 -39.44 -0.40 -1.13 16 22 C -0.09 -0.61 9.81 -39.61 -0.39 -1.00 16 23 C 0.00 -0.01 6.35 -39.07 -0.25 -0.25 16 24 Cl -0.02 -0.23 26.02 -51.86 -1.35 -1.58 16 25 C -0.13 -2.37 5.36 -26.61 -0.14 -2.52 16 26 C 0.17 3.94 5.31 -3.71 -0.02 3.92 16 27 H 0.25 7.04 8.31 -40.82 -0.34 6.71 16 28 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 1.05 7.93 -51.93 -0.41 0.63 16 30 H 0.05 0.59 7.16 -51.93 -0.37 0.22 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.40 3.78 5.68 -40.82 -0.23 3.54 16 36 H 0.15 1.00 6.41 -52.49 -0.34 0.66 16 37 H 0.15 0.53 8.06 -52.48 -0.42 0.11 16 38 H 0.15 0.64 8.06 -52.49 -0.42 0.21 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.09 2.31 6.04 -51.93 -0.31 1.99 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 359.06 15.07 5.41 5.41 Total: -1.00 -31.16 359.06 -9.69 -40.85 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -5.44 Total: -0.49 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -3.18 Total: -2.77 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: -0.22 Total: -48.90 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: 0.07 Total: -7.94 kcal Atomic # 9 Polarization: -1.11 SS G_CDS: 0.04 Total: -1.08 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -1.35 Total: -1.58 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.16 -9.69 -40.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340698595.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.705 kcal (2) G-P(sol) polarization free energy of solvation -31.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds