Wall clock time and date at job start Sat Apr 11 2020 05:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30700 * 1 3 3 Si 1.86807 * 119.99700 * 2 1 4 4 H 1.48492 * 109.46855 * 269.99819 * 3 2 1 5 5 H 1.48497 * 109.47021 * 29.99876 * 3 2 1 6 6 H 1.48500 * 109.47176 * 149.99825 * 3 2 1 7 7 C 1.40147 * 120.00543 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00665 * 197.92240 * 7 2 1 9 9 C 1.40973 * 119.99600 * 17.93064 * 7 2 1 10 10 C 1.40964 * 120.10052 * 24.69160 * 9 7 2 11 11 C 1.36203 * 119.89254 * 180.02562 * 10 9 7 12 12 C 1.40120 * 120.10842 * 0.02562 * 11 10 9 13 13 C 1.47449 * 119.90602 * 179.97438 * 12 11 10 14 14 N 1.32157 * 126.58753 * 179.71392 * 13 12 11 15 15 C 1.34820 * 105.51048 * 179.89145 * 14 13 12 16 16 C 1.48461 * 126.29332 * 180.13488 * 15 14 13 17 17 N 1.33980 * 125.64608 * 359.94512 * 16 15 14 18 18 C 1.30639 * 109.78615 * 179.81671 * 17 16 15 19 19 N 1.34567 * 108.29084 * 0.44518 * 18 17 16 20 20 C 1.46498 * 126.74607 * 179.70766 * 19 18 17 21 21 C 1.50704 * 109.47213 * 125.00523 * 20 19 18 22 22 N 1.34776 * 120.00304 * 180.02562 * 21 20 19 23 23 O 1.21283 * 119.99452 * 359.97438 * 21 20 19 24 24 N 1.31477 * 125.64583 * 180.25865 * 16 15 14 25 25 N 1.30905 * 107.40658 * 0.37314 * 15 14 13 26 26 O 1.21271 * 110.36930 * 359.75843 * 25 15 14 27 27 C 1.40134 * 120.20070 * 0.25264 * 12 11 10 28 28 C 1.36215 * 120.09689 * 359.47873 * 27 12 11 29 29 H 0.96992 * 120.00633 * 359.97438 * 1 2 3 30 30 H 1.07993 * 120.05301 * 0.02562 * 10 9 7 31 31 H 1.08003 * 119.94825 * 180.02562 * 11 10 9 32 32 H 1.07999 * 125.85236 * 180.14000 * 18 17 16 33 33 H 1.09006 * 109.47041 * 244.99788 * 20 19 18 34 34 H 1.08991 * 109.47374 * 5.00210 * 20 19 18 35 35 H 0.96996 * 119.99891 * 359.97438 * 22 21 20 36 36 H 0.97002 * 119.99923 * 179.97438 * 22 21 20 37 37 H 1.07989 * 119.95370 * 179.72179 * 27 12 11 38 38 H 1.07996 * 120.04860 * 180.25548 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6178 0.0000 4 1 2.4884 2.0464 -1.4000 5 1 1.4383 2.6527 0.7000 6 1 3.5385 1.4404 0.7001 7 6 2.0079 -1.2136 0.0005 8 1 3.0485 -1.2362 0.2883 9 6 1.3544 -2.4050 -0.3748 10 6 0.2262 -2.3569 -1.2186 11 6 -0.4023 -3.5106 -1.5781 12 6 0.0706 -4.7438 -1.1103 13 6 -0.6135 -5.9899 -1.5019 14 7 -0.2795 -7.2177 -1.1446 15 6 -1.1842 -8.0238 -1.7355 16 6 -1.2389 -9.5042 -1.6371 17 7 -0.3900 -10.2723 -0.9411 18 6 -0.7264 -11.5285 -1.0659 19 7 -1.8079 -11.5988 -1.8636 20 6 -2.5153 -12.8136 -2.2760 21 6 -3.9740 -12.6917 -1.9178 22 7 -4.8246 -13.6973 -2.2037 23 8 -4.3824 -11.6889 -1.3713 24 7 -2.1248 -10.2788 -2.2233 25 7 -2.0023 -7.2617 -2.4162 26 8 -1.6923 -6.0955 -2.2949 27 6 1.1883 -4.7961 -0.2666 28 6 1.8264 -3.6479 0.0938 29 1 -0.4851 0.8399 0.0004 30 1 -0.1393 -1.4069 -1.5793 31 1 -1.2665 -3.4748 -2.2249 32 1 -0.2201 -12.3671 -0.6112 33 1 -2.4155 -12.9440 -3.3536 34 1 -2.0863 -13.6752 -1.7645 35 1 -4.4978 -14.4994 -2.6404 36 1 -5.7634 -13.6189 -1.9728 37 1 1.5466 -5.7484 0.0952 38 1 2.6902 -3.6895 0.7407 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356754797.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:14 Heat of formation + Delta-G solvation = 149.866743 kcal Electronic energy + Delta-G solvation = -26737.156146 eV Core-core repulsion = 22585.087735 eV Total energy + Delta-G solvation = -4152.068411 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.107 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.65735 -42.24414 -39.80598 -37.77087 -35.34592 -34.43629 -34.24734 -33.88457 -32.31816 -31.22642 -29.81273 -29.45038 -28.53864 -25.97504 -24.67968 -23.31308 -22.29849 -21.59765 -21.13010 -20.84178 -19.86513 -18.36841 -17.75807 -17.60113 -17.35743 -17.19473 -16.43283 -16.04794 -15.68791 -15.39726 -15.26246 -14.72404 -14.46213 -14.10669 -14.04215 -13.49073 -13.27415 -12.85941 -12.23048 -12.11237 -12.06704 -11.91046 -11.60754 -11.46139 -11.31149 -11.10095 -10.84253 -10.66976 -10.35919 -10.25645 -10.14145 -10.06391 -10.00442 -9.97147 -9.61249 -9.46054 -9.11627 -7.79191 -7.50352 -7.13277 -4.67387 1.11335 1.54982 1.78299 2.03597 2.15844 2.77156 2.85567 2.91867 2.95257 3.00037 3.17796 3.42731 3.55079 3.66846 3.68586 3.92355 4.17454 4.28116 4.37965 4.41385 4.56889 5.21901 5.43823 5.45949 5.96848 6.02849 6.15251 6.19190 6.23565 6.36201 6.49418 6.64608 6.70971 6.71310 6.78002 6.95636 7.07805 7.36930 7.60198 7.68013 7.76433 7.80940 7.88014 7.96258 8.30099 8.51805 8.64095 8.86930 9.77002 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.038188 B = 0.001839 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.032378 B =15221.647123 C =15696.219486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.760 5.760 2 C 0.071 3.929 3 Si 0.917 3.083 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.426 4.426 8 H 0.089 0.911 9 C 0.128 3.872 10 C -0.175 4.175 11 C -0.051 4.051 12 C -0.197 4.197 13 C 0.281 3.719 14 N -0.492 5.492 15 C 0.247 3.753 16 C 0.315 3.685 17 N -0.499 5.499 18 C 0.258 3.742 19 N -0.377 5.377 20 C 0.114 3.886 21 C 0.500 3.500 22 N -0.853 5.853 23 O -0.504 6.504 24 N -0.249 5.249 25 N -0.378 5.378 26 O 0.065 5.935 27 C -0.016 4.016 28 C -0.233 4.233 29 H 0.290 0.710 30 H 0.124 0.876 31 H 0.101 0.899 32 H 0.227 0.773 33 H 0.122 0.878 34 H 0.135 0.865 35 H 0.402 0.598 36 H 0.407 0.593 37 H 0.108 0.892 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.795 -22.687 -4.413 23.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.382 5.382 2 C -0.152 4.152 3 Si 0.740 3.260 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.453 4.453 8 H 0.107 0.893 9 C 0.124 3.876 10 C -0.194 4.194 11 C -0.071 4.071 12 C -0.203 4.203 13 C 0.072 3.928 14 N -0.227 5.227 15 C -0.026 4.026 16 C 0.033 3.967 17 N -0.225 5.225 18 C -0.039 4.039 19 N -0.170 5.170 20 C -0.013 4.013 21 C 0.281 3.719 22 N -0.420 5.420 23 O -0.376 6.376 24 N -0.079 5.079 25 N -0.092 5.092 26 O 0.006 5.994 27 C -0.036 4.036 28 C -0.252 4.252 29 H 0.102 0.898 30 H 0.142 0.858 31 H 0.119 0.881 32 H 0.244 0.756 33 H 0.139 0.861 34 H 0.153 0.847 35 H 0.230 0.770 36 H 0.239 0.761 37 H 0.126 0.874 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.849 -22.122 -4.575 23.105 hybrid contribution -0.045 -0.050 0.011 0.068 sum -4.894 -22.173 -4.564 23.160 Atomic orbital electron populations 1.69757 1.07988 1.30549 1.29910 1.26179 0.94883 1.02192 0.91925 0.86141 0.80549 0.79468 0.79807 1.18763 1.19891 1.18134 1.19943 0.98572 0.91149 1.35623 0.89261 1.17871 0.90373 0.92291 0.87056 1.20951 0.99716 0.96892 1.01876 1.20482 0.97642 0.91576 0.97409 1.16633 1.03418 0.85221 1.15000 1.26758 0.84343 0.94635 0.87056 1.72326 1.25366 0.98613 1.26418 1.21499 0.92186 0.91316 0.97626 1.19914 0.90954 0.90078 0.95732 1.70533 1.28035 1.00188 1.23782 1.26215 0.87960 0.96868 0.92869 1.50066 1.23401 1.05435 1.38141 1.21549 0.90803 0.84875 1.04095 1.20531 0.88429 0.83618 0.79316 1.43736 1.12784 1.20355 1.65095 1.90926 1.77888 1.28939 1.39883 1.78533 1.20293 0.86657 1.22376 1.74874 1.22208 0.89644 1.22491 1.85357 1.39640 1.21019 1.53395 1.20347 0.92299 0.97750 0.93244 1.20678 1.04556 0.92287 1.07717 0.89834 0.85783 0.88067 0.75642 0.86058 0.84728 0.76951 0.76098 0.87427 0.87815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.64 10.96 55.56 0.61 -17.03 16 2 C 0.07 1.59 5.13 -17.32 -0.09 1.50 16 3 Si 0.92 16.60 29.60 -169.99 -5.03 11.57 16 4 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 5 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 6 H -0.26 -4.62 7.11 56.52 0.40 -4.22 16 7 C -0.43 -10.09 9.03 -37.83 -0.34 -10.43 16 8 H 0.09 2.00 7.91 -52.49 -0.42 1.58 16 9 C 0.13 3.14 5.57 -106.80 -0.60 2.54 16 10 C -0.17 -4.21 8.63 -39.28 -0.34 -4.55 16 11 C -0.05 -1.16 9.65 -39.61 -0.38 -1.54 16 12 C -0.20 -4.55 5.89 -104.73 -0.62 -5.16 16 13 C 0.28 6.40 7.98 -13.89 -0.11 6.29 16 14 N -0.49 -11.38 11.25 -10.22 -0.12 -11.49 16 15 C 0.25 5.52 8.14 -156.34 -1.27 4.24 16 16 C 0.31 6.23 8.08 -156.61 -1.27 4.96 16 17 N -0.50 -8.53 11.21 -12.37 -0.14 -8.67 16 18 C 0.26 2.82 12.61 -90.69 -1.14 1.68 16 19 N -0.38 -4.36 3.41 -63.82 -0.22 -4.58 16 20 C 0.11 0.59 7.03 -5.19 -0.04 0.55 16 21 C 0.50 4.08 8.14 -10.98 -0.09 3.99 16 22 N -0.85 -2.73 8.87 31.22 0.28 -2.46 16 23 O -0.50 -7.64 16.58 5.55 0.09 -7.55 16 24 N -0.25 -4.42 11.85 32.11 0.38 -4.04 16 25 N -0.38 -8.52 12.19 31.25 0.38 -8.14 16 26 O 0.07 1.45 11.09 16.37 0.18 1.63 16 27 C -0.02 -0.37 9.63 -39.60 -0.38 -0.75 16 28 C -0.23 -5.36 9.73 -39.28 -0.38 -5.74 16 29 H 0.29 6.05 8.29 -40.82 -0.34 5.71 16 30 H 0.12 3.01 6.16 -52.49 -0.32 2.69 16 31 H 0.10 2.10 7.92 -52.48 -0.42 1.68 16 32 H 0.23 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.12 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.13 -0.03 8.08 -51.93 -0.42 -0.45 16 35 H 0.40 -0.37 8.83 -40.82 -0.36 -0.73 16 36 H 0.41 1.34 8.93 -40.82 -0.36 0.97 16 37 H 0.11 2.33 7.85 -52.49 -0.41 1.91 16 38 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 351.82 15.07 5.30 5.30 Total: -1.00 -36.87 351.82 -8.44 -45.31 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -3.11 Total: 2.58 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: -7.05 Total: -2.42 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: 1.18 Total: -56.41 kcal Atomic # 8 Polarization: -6.19 SS G_CDS: 0.27 Total: -5.92 kcal Atomic # 14 Polarization: 16.60 SS G_CDS: -5.03 Total: 11.57 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -36.87 -8.44 -45.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356754797.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.174 kcal (2) G-P(sol) polarization free energy of solvation -36.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds