Wall clock time and date at job start Sat Apr 11 2020 05:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30700 * 1 3 3 Si 1.86807 * 119.99700 * 2 1 4 4 H 1.48492 * 109.46855 * 269.99819 * 3 2 1 5 5 H 1.48497 * 109.47021 * 29.99876 * 3 2 1 6 6 H 1.48500 * 109.47176 * 149.99825 * 3 2 1 7 7 C 1.40147 * 120.00543 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00665 * 197.92240 * 7 2 1 9 9 C 1.40973 * 119.99600 * 17.93064 * 7 2 1 10 10 C 1.40964 * 120.10052 * 24.69160 * 9 7 2 11 11 C 1.36203 * 119.89254 * 180.02562 * 10 9 7 12 12 C 1.40120 * 120.10842 * 0.02562 * 11 10 9 13 13 C 1.47449 * 119.90602 * 179.97438 * 12 11 10 14 14 N 1.32157 * 126.58753 * 179.71392 * 13 12 11 15 15 C 1.34820 * 105.51048 * 179.89145 * 14 13 12 16 16 C 1.48461 * 126.29332 * 180.13488 * 15 14 13 17 17 N 1.33980 * 125.64608 * 359.94512 * 16 15 14 18 18 C 1.30639 * 109.78615 * 179.81671 * 17 16 15 19 19 N 1.34567 * 108.29084 * 0.44518 * 18 17 16 20 20 C 1.46498 * 126.74607 * 179.70766 * 19 18 17 21 21 C 1.50704 * 109.47213 * 125.00523 * 20 19 18 22 22 N 1.34776 * 120.00304 * 180.02562 * 21 20 19 23 23 O 1.21283 * 119.99452 * 359.97438 * 21 20 19 24 24 N 1.31477 * 125.64583 * 180.25865 * 16 15 14 25 25 N 1.30905 * 107.40658 * 0.37314 * 15 14 13 26 26 O 1.21271 * 110.36930 * 359.75843 * 25 15 14 27 27 C 1.40134 * 120.20070 * 0.25264 * 12 11 10 28 28 C 1.36215 * 120.09689 * 359.47873 * 27 12 11 29 29 H 0.96992 * 120.00633 * 359.97438 * 1 2 3 30 30 H 1.07993 * 120.05301 * 0.02562 * 10 9 7 31 31 H 1.08003 * 119.94825 * 180.02562 * 11 10 9 32 32 H 1.07999 * 125.85236 * 180.14000 * 18 17 16 33 33 H 1.09006 * 109.47041 * 244.99788 * 20 19 18 34 34 H 1.08991 * 109.47374 * 5.00210 * 20 19 18 35 35 H 0.96996 * 119.99891 * 359.97438 * 22 21 20 36 36 H 0.97002 * 119.99923 * 179.97438 * 22 21 20 37 37 H 1.07989 * 119.95370 * 179.72179 * 27 12 11 38 38 H 1.07996 * 120.04860 * 180.25548 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6178 0.0000 4 1 2.4884 2.0464 -1.4000 5 1 1.4383 2.6527 0.7000 6 1 3.5385 1.4404 0.7001 7 6 2.0079 -1.2136 0.0005 8 1 3.0485 -1.2362 0.2883 9 6 1.3544 -2.4050 -0.3748 10 6 0.2262 -2.3569 -1.2186 11 6 -0.4023 -3.5106 -1.5781 12 6 0.0706 -4.7438 -1.1103 13 6 -0.6135 -5.9899 -1.5019 14 7 -0.2795 -7.2177 -1.1446 15 6 -1.1842 -8.0238 -1.7355 16 6 -1.2389 -9.5042 -1.6371 17 7 -0.3900 -10.2723 -0.9411 18 6 -0.7264 -11.5285 -1.0659 19 7 -1.8079 -11.5988 -1.8636 20 6 -2.5153 -12.8136 -2.2760 21 6 -3.9740 -12.6917 -1.9178 22 7 -4.8246 -13.6973 -2.2037 23 8 -4.3824 -11.6889 -1.3713 24 7 -2.1248 -10.2788 -2.2233 25 7 -2.0023 -7.2617 -2.4162 26 8 -1.6923 -6.0955 -2.2949 27 6 1.1883 -4.7961 -0.2666 28 6 1.8264 -3.6479 0.0938 29 1 -0.4851 0.8399 0.0004 30 1 -0.1393 -1.4069 -1.5793 31 1 -1.2665 -3.4748 -2.2249 32 1 -0.2201 -12.3671 -0.6112 33 1 -2.4155 -12.9440 -3.3536 34 1 -2.0863 -13.6752 -1.7645 35 1 -4.4978 -14.4994 -2.6404 36 1 -5.7634 -13.6189 -1.9728 37 1 1.5466 -5.7484 0.0952 38 1 2.6902 -3.6895 0.7407 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356754797.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:13 Heat of formation + Delta-G solvation = 121.222434 kcal Electronic energy + Delta-G solvation = -26738.398256 eV Core-core repulsion = 22585.087735 eV Total energy + Delta-G solvation = -4153.310521 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.107 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -46.38473 -43.27519 -40.47856 -39.57680 -36.94544 -36.01361 -35.17517 -34.69420 -33.90323 -32.50067 -31.57399 -31.22576 -29.33088 -27.76047 -26.11126 -24.87361 -23.43109 -23.06032 -22.62718 -21.89634 -21.31813 -19.39587 -19.17890 -19.09396 -18.70598 -18.16625 -17.40064 -17.36379 -16.84891 -16.75021 -16.18664 -15.92146 -15.77281 -15.65448 -15.26105 -14.77161 -14.51209 -14.01687 -13.92208 -13.81707 -13.68260 -13.33247 -13.14051 -12.94662 -12.84136 -12.72668 -12.40493 -12.05006 -11.78381 -11.68293 -11.43442 -11.37981 -11.29019 -11.09574 -11.01746 -10.75076 -10.46204 -9.62162 -9.33017 -8.84079 -6.49551 -0.37930 0.05902 0.83676 1.00111 1.16270 1.26753 1.43468 1.48222 1.57731 1.64107 1.87836 2.03699 2.13959 2.16992 2.43100 2.63931 2.79565 3.54871 3.62300 3.66860 3.87286 4.02213 4.13405 4.25080 4.38352 4.40984 4.58778 4.72731 4.91832 4.95238 4.99378 5.03512 5.15208 5.26285 5.56853 5.68256 5.78290 5.82325 5.95475 5.98745 6.15202 6.38689 6.48997 6.70690 6.78323 6.81943 7.15145 7.27023 8.09675 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.038188 B = 0.001839 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.032378 B =15221.647123 C =15696.219486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.035 3.965 3 Si 0.991 3.009 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.252 1.252 7 C -0.446 4.446 8 H 0.098 0.902 9 C 0.102 3.898 10 C -0.191 4.191 11 C -0.050 4.050 12 C -0.208 4.208 13 C 0.277 3.723 14 N -0.504 5.504 15 C 0.246 3.754 16 C 0.277 3.723 17 N -0.546 5.546 18 C 0.281 3.719 19 N -0.366 5.366 20 C 0.104 3.896 21 C 0.494 3.506 22 N -0.826 5.826 23 O -0.588 6.588 24 N -0.279 5.279 25 N -0.394 5.394 26 O 0.061 5.939 27 C -0.018 4.018 28 C -0.239 4.239 29 H 0.300 0.700 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.296 0.704 33 H 0.153 0.847 34 H 0.204 0.796 35 H 0.425 0.575 36 H 0.409 0.591 37 H 0.116 0.884 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.870 -25.236 -4.470 25.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.186 4.186 3 Si 0.811 3.189 4 H -0.184 1.184 5 H -0.191 1.191 6 H -0.175 1.175 7 C -0.473 4.473 8 H 0.116 0.884 9 C 0.098 3.902 10 C -0.210 4.210 11 C -0.070 4.070 12 C -0.213 4.213 13 C 0.067 3.933 14 N -0.240 5.240 15 C -0.027 4.027 16 C -0.004 4.004 17 N -0.274 5.274 18 C -0.013 4.013 19 N -0.159 5.159 20 C -0.019 4.019 21 C 0.277 3.723 22 N -0.392 5.392 23 O -0.466 6.466 24 N -0.112 5.112 25 N -0.110 5.110 26 O 0.004 5.996 27 C -0.038 4.038 28 C -0.259 4.259 29 H 0.112 0.888 30 H 0.135 0.865 31 H 0.134 0.866 32 H 0.311 0.689 33 H 0.170 0.830 34 H 0.221 0.779 35 H 0.258 0.742 36 H 0.240 0.760 37 H 0.134 0.866 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.951 -24.782 -4.676 25.526 hybrid contribution -0.444 0.441 0.006 0.626 sum -4.395 -24.340 -4.670 25.171 Atomic orbital electron populations 1.69786 1.09471 1.32143 1.29617 1.27053 0.95527 1.05241 0.90804 0.85035 0.79192 0.74807 0.79877 1.18383 1.19125 1.17546 1.20274 0.99118 0.91826 1.36035 0.88441 1.18214 0.90940 0.93323 0.87683 1.20947 1.00430 0.96906 1.02742 1.20620 0.97862 0.91257 0.97276 1.16745 1.03781 0.85387 1.15397 1.26760 0.84556 0.94670 0.87266 1.72299 1.25972 0.98818 1.26864 1.22056 0.91186 0.93067 0.96403 1.19746 0.93037 0.89191 0.98432 1.70415 1.29219 1.02523 1.25235 1.27411 0.86784 0.96547 0.90596 1.50345 1.23595 1.04784 1.37132 1.22328 0.88655 0.83968 1.06944 1.21110 0.90040 0.83040 0.78112 1.43571 1.12412 1.20036 1.63213 1.90914 1.79396 1.32244 1.44074 1.78358 1.20378 0.89550 1.22890 1.74830 1.22904 0.89713 1.23519 1.85328 1.39553 1.21222 1.53466 1.20458 0.92178 0.98056 0.93082 1.20852 1.05106 0.91962 1.07980 0.88815 0.86471 0.86638 0.68901 0.82989 0.77914 0.74166 0.75987 0.86641 0.86316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -36.79 10.96 21.86 0.24 -36.55 16 2 C 0.03 1.53 5.13 85.32 0.44 1.97 16 3 Si 0.99 33.23 29.60 68.60 2.03 35.26 16 4 H -0.26 -8.52 7.11 99.48 0.71 -7.81 16 5 H -0.27 -8.58 7.11 99.48 0.71 -7.87 16 6 H -0.25 -8.17 7.11 99.48 0.71 -7.47 16 7 C -0.45 -21.27 9.03 23.40 0.21 -21.05 16 8 H 0.10 4.34 7.91 -2.91 -0.02 4.32 16 9 C 0.10 5.12 5.57 -21.27 -0.12 5.00 16 10 C -0.19 -9.46 8.63 22.46 0.19 -9.27 16 11 C -0.05 -2.36 9.65 22.25 0.21 -2.14 16 12 C -0.21 -9.88 5.89 -19.93 -0.12 -10.00 16 13 C 0.28 13.10 7.98 87.15 0.70 13.80 16 14 N -0.50 -24.16 11.25 -302.03 -3.40 -27.55 16 15 C 0.25 11.44 8.14 137.39 1.12 12.56 16 16 C 0.28 11.18 8.08 137.49 1.11 12.29 16 17 N -0.55 -18.27 11.21 -193.04 -2.16 -20.43 16 18 C 0.28 5.23 12.61 180.37 2.27 7.50 16 19 N -0.37 -7.50 3.41 -355.84 -1.21 -8.71 16 20 C 0.10 0.61 7.03 85.63 0.60 1.22 16 21 C 0.49 6.96 8.14 87.66 0.71 7.67 16 22 N -0.83 -2.89 8.87 -173.53 -1.54 -4.43 16 23 O -0.59 -17.93 16.58 -3.04 -0.05 -17.98 16 24 N -0.28 -9.96 11.85 -52.32 -0.62 -10.58 16 25 N -0.39 -18.57 12.19 -57.44 -0.70 -19.27 16 26 O 0.06 2.84 11.09 68.65 0.76 3.61 16 27 C -0.02 -0.83 9.63 22.26 0.21 -0.62 16 28 C -0.24 -11.23 9.73 22.47 0.22 -11.01 16 29 H 0.30 12.48 8.29 -92.71 -0.77 11.71 16 30 H 0.12 5.88 6.16 -2.91 -0.02 5.87 16 31 H 0.12 4.96 7.92 -2.91 -0.02 4.93 16 32 H 0.30 0.64 8.06 -2.91 -0.02 0.62 16 33 H 0.15 0.08 8.14 -2.38 -0.02 0.06 16 34 H 0.20 -1.60 8.08 -2.39 -0.02 -1.62 16 35 H 0.43 -2.58 8.83 -92.71 -0.82 -3.40 16 36 H 0.41 1.90 8.93 -92.71 -0.83 1.07 16 37 H 0.12 5.10 7.85 -2.92 -0.02 5.07 16 38 H 0.12 5.06 8.06 -2.91 -0.02 5.04 16 Total: -1.00 -88.84 351.82 0.65 -88.19 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -0.47 Total: 10.53 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 7.77 Total: 7.92 kcal Atomic # 7 Polarization: -118.13 SS G_CDS: -9.40 Total: -127.53 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: 0.71 Total: -14.37 kcal Atomic # 14 Polarization: 33.23 SS G_CDS: 2.03 Total: 35.26 kcal Total: -88.84 0.65 -88.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356754797.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.416 kcal (2) G-P(sol) polarization free energy of solvation -88.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds