Wall clock time and date at job start Sat Apr 11 2020 05:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86790 * 120.00224 * 2 1 4 4 H 1.48507 * 109.47205 * 239.99700 * 3 2 1 5 5 H 1.48502 * 109.47245 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47514 * 119.99316 * 3 2 1 7 7 C 1.37874 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00167 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00334 * 0.02562 * 7 2 1 10 10 S 1.81398 * 109.47177 * 179.97438 * 9 7 2 11 11 C 1.81403 * 102.99832 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47178 * 180.02562 * 11 10 9 13 13 O 1.21286 * 119.99942 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00352 * 180.02562 * 12 11 10 15 15 C 1.47076 * 120.88425 * 180.02562 * 14 12 11 16 16 C 1.53245 * 108.52345 * 231.20450 * 15 14 12 17 17 N 1.46897 * 109.33840 * 306.17368 * 16 15 14 18 18 C 1.46907 * 110.99850 * 187.25089 * 17 16 15 19 19 C 1.50693 * 109.46912 * 169.99784 * 18 17 16 20 20 C 1.38433 * 122.53989 * 269.95178 * 19 18 17 21 21 C 1.33389 * 114.92022 * 180.02562 * 20 19 18 22 22 S 1.75889 * 109.59326 * 359.97438 * 21 20 19 23 23 C 1.33388 * 122.54245 * 89.97860 * 19 18 17 24 24 C 1.46900 * 111.27353 * 63.10277 * 17 16 15 25 25 C 1.47084 * 120.87853 * 0.02562 * 14 12 11 26 26 H 0.97001 * 119.99518 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.46686 * 60.00053 * 9 7 2 28 28 H 1.08991 * 109.47087 * 300.00364 * 9 7 2 29 29 H 1.09001 * 109.47278 * 60.00283 * 11 10 9 30 30 H 1.08996 * 109.47540 * 300.00087 * 11 10 9 31 31 H 1.08998 * 109.62989 * 111.49559 * 15 14 12 32 32 H 1.08997 * 109.78970 * 351.01316 * 15 14 12 33 33 H 1.08998 * 109.49075 * 186.20799 * 16 15 14 34 34 H 1.09002 * 109.48906 * 66.13302 * 16 15 14 35 35 H 1.09003 * 109.46771 * 49.99855 * 18 17 16 36 36 H 1.08992 * 109.46706 * 290.00009 * 18 17 16 37 37 H 1.07998 * 122.53579 * 0.04200 * 20 19 18 38 38 H 1.07995 * 125.20209 * 180.26467 * 21 20 19 39 39 H 1.08006 * 125.20143 * 359.97438 * 23 19 18 40 40 H 1.09000 * 109.49333 * 56.85042 * 24 17 16 41 41 H 1.08998 * 109.49480 * 176.93690 * 24 17 16 42 42 H 1.08994 * 109.62970 * 248.50116 * 25 14 12 43 43 H 1.09002 * 109.62981 * 8.89248 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 16 2.4297 -3.8780 0.0005 11 6 1.3514 -5.3367 -0.0003 12 6 2.1953 -6.5852 0.0003 13 8 3.4051 -6.4995 0.0016 14 7 1.6057 -7.7972 -0.0007 15 6 2.4105 -9.0282 0.0004 16 6 1.9165 -9.9338 -1.1329 17 7 0.4683 -10.1382 -0.9960 18 6 -0.0157 -11.1364 -1.9592 19 6 -1.4409 -11.5003 -1.6318 20 6 -1.7665 -12.5368 -0.7740 21 6 -3.0744 -12.7266 -0.5927 22 16 -3.9777 -11.5515 -1.5396 23 6 -2.4844 -10.8485 -2.1471 24 6 -0.2643 -8.8727 -1.1365 25 6 0.1403 -7.9237 -0.0028 26 1 -0.4849 0.8401 -0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8902 29 1 0.7225 -5.3232 -0.8905 30 1 0.7219 -5.3237 0.8895 31 1 2.2946 -9.5406 0.9554 32 1 3.4605 -8.7828 -0.1582 33 1 2.4265 -10.8955 -1.0784 34 1 2.1284 -9.4632 -2.0930 35 1 0.6090 -12.0279 -1.9033 36 1 0.0314 -10.7222 -2.9662 37 1 -1.0183 -13.1455 -0.2881 38 1 -3.5115 -13.4829 0.0423 39 1 -2.4218 -10.0159 -2.8323 40 1 -0.0221 -8.4169 -2.0965 41 1 -1.3359 -9.0651 -1.0846 42 1 -0.1935 -8.3302 0.9518 43 1 -0.3116 -6.9447 -0.1621 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413010939.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:20 Heat of formation + Delta-G solvation = 13.003373 kcal Electronic energy + Delta-G solvation = -24024.461391 eV Core-core repulsion = 20515.902554 eV Total energy + Delta-G solvation = -3508.558837 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.32005 -39.03089 -37.42397 -34.61254 -33.12807 -31.90790 -30.44011 -29.72343 -28.49940 -28.00608 -25.37956 -23.92015 -23.09998 -22.87802 -21.45354 -19.15726 -19.08758 -17.91552 -17.23928 -16.60315 -15.99382 -15.87659 -15.73451 -15.49968 -15.34726 -15.00524 -14.55891 -14.30203 -13.83331 -13.58961 -13.39030 -13.29031 -13.05529 -12.68532 -12.58140 -12.43810 -12.32266 -12.23419 -12.01610 -11.85724 -11.60548 -11.51876 -11.42700 -10.98609 -10.83504 -10.72369 -10.00934 -9.72125 -9.54505 -9.19864 -8.95211 -8.78675 -8.74805 -8.59567 -8.51778 -6.63269 -6.18346 -4.21962 0.63807 1.31421 1.63993 2.26925 2.34031 2.75382 3.06271 3.30407 3.32792 3.38001 3.63227 3.84908 4.37289 4.38379 4.47724 4.58848 4.66447 4.79794 4.88589 4.90884 4.99224 5.09139 5.11884 5.18034 5.19017 5.25295 5.31968 5.37074 5.44346 5.53863 5.60431 5.62638 5.66532 5.80208 6.01859 6.09977 6.37067 6.57890 6.64745 7.09006 7.10043 7.32781 7.76892 8.02899 8.26385 8.79930 9.40934 10.93184 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.017240 B = 0.002060 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.777838 B =13591.883710 C =14931.169776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.065 3.935 3 Si 0.907 3.093 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.510 4.510 8 H 0.067 0.933 9 C 0.075 3.925 10 S -0.236 6.236 11 C -0.129 4.129 12 C 0.536 3.464 13 O -0.515 6.515 14 N -0.619 5.619 15 C 0.119 3.881 16 C 0.043 3.957 17 N -0.531 5.531 18 C 0.113 3.887 19 C -0.092 4.092 20 C -0.116 4.116 21 C -0.215 4.215 22 S 0.095 5.905 23 C -0.210 4.210 24 C 0.036 3.964 25 C 0.113 3.887 26 H 0.266 0.734 27 H 0.035 0.965 28 H 0.035 0.965 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.041 0.959 35 H 0.086 0.914 36 H 0.044 0.956 37 H 0.141 0.859 38 H 0.163 0.837 39 H 0.162 0.838 40 H 0.040 0.960 41 H 0.091 0.909 42 H 0.077 0.923 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.752 -28.894 -3.368 30.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.139 4.139 3 Si 0.734 3.266 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.549 4.549 8 H 0.085 0.915 9 C -0.072 4.072 10 S -0.011 6.011 11 C -0.279 4.279 12 C 0.323 3.677 13 O -0.389 6.389 14 N -0.355 5.355 15 C -0.004 4.004 16 C -0.086 4.086 17 N -0.256 5.256 18 C -0.016 4.016 19 C -0.105 4.105 20 C -0.146 4.146 21 C -0.350 4.350 22 S 0.358 5.642 23 C -0.346 4.346 24 C -0.092 4.092 25 C -0.011 4.011 26 H 0.075 0.925 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.117 0.883 30 H 0.119 0.881 31 H 0.091 0.909 32 H 0.115 0.885 33 H 0.106 0.894 34 H 0.059 0.941 35 H 0.105 0.895 36 H 0.062 0.938 37 H 0.158 0.842 38 H 0.181 0.819 39 H 0.180 0.820 40 H 0.059 0.941 41 H 0.110 0.890 42 H 0.095 0.905 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.785 -28.575 -3.107 29.779 hybrid contribution 0.297 0.792 -0.583 1.027 sum -7.488 -27.783 -3.689 29.010 Atomic orbital electron populations 1.69945 1.06134 1.27404 1.49775 1.24958 0.94991 0.99270 0.94650 0.86397 0.79386 0.81759 0.79033 1.19884 1.21093 1.19855 1.20609 0.93501 0.88638 1.52197 0.91452 1.21154 0.94446 0.91613 1.00000 1.87247 1.17484 0.98376 1.97957 1.23390 1.02381 0.96375 1.05783 1.20020 0.88439 0.83710 0.75524 1.90715 1.14090 1.86022 1.48080 1.48107 1.06896 1.05451 1.75080 1.21617 0.96546 0.83769 0.98420 1.22515 0.87828 1.00125 0.98118 1.61920 1.03724 1.09007 1.50973 1.20739 0.91378 0.95974 0.93542 1.18772 0.95466 0.97056 0.99225 1.20035 0.95769 0.99036 0.99790 1.25608 0.97169 1.05168 1.07082 1.84386 1.09474 1.27938 1.42363 1.25557 0.95096 1.06039 1.07918 1.22594 0.99618 0.89345 0.97680 1.21838 0.79957 1.00055 0.99234 0.92489 0.94713 0.94646 0.88304 0.88136 0.90865 0.88486 0.89401 0.94106 0.89542 0.93755 0.84180 0.81936 0.82046 0.94136 0.89046 0.90453 0.89023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.01 13.29 55.43 0.74 -25.28 16 2 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 3 Si 0.91 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.51 -14.60 9.13 -34.44 -0.31 -14.91 16 8 H 0.07 1.94 7.71 -52.49 -0.40 1.54 16 9 C 0.07 1.96 5.70 36.01 0.21 2.17 16 10 S -0.24 -5.46 20.79 -107.50 -2.24 -7.69 16 11 C -0.13 -2.20 4.79 36.00 0.17 -2.03 16 12 C 0.54 8.93 7.73 -10.99 -0.08 8.85 16 13 O -0.51 -10.53 15.32 5.55 0.09 -10.45 16 14 N -0.62 -7.77 3.01 -172.44 -0.52 -8.29 16 15 C 0.12 1.27 6.59 -3.60 -0.02 1.25 16 16 C 0.04 0.36 5.62 -3.70 -0.02 0.34 16 17 N -0.53 -4.35 4.62 -235.74 -1.09 -5.44 16 18 C 0.11 0.78 5.23 -4.98 -0.03 0.75 16 19 C -0.09 -0.67 4.80 -106.25 -0.51 -1.18 16 20 C -0.12 -0.80 9.98 -41.20 -0.41 -1.22 16 21 C -0.21 -1.40 11.23 29.04 0.33 -1.08 16 22 S 0.09 0.65 23.34 -107.50 -2.51 -1.86 16 23 C -0.21 -1.49 9.20 29.04 0.27 -1.22 16 24 C 0.04 0.31 5.39 -3.68 -0.02 0.29 16 25 C 0.11 1.11 6.51 -3.58 -0.02 1.09 16 26 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 27 H 0.03 0.93 8.14 -51.92 -0.42 0.51 16 28 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.10 1.52 7.66 -51.92 -0.40 1.12 16 30 H 0.10 1.56 8.00 -51.93 -0.42 1.14 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.10 1.17 7.07 -51.93 -0.37 0.80 16 33 H 0.09 0.57 7.99 -51.93 -0.41 0.15 16 34 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.09 0.50 7.96 -51.93 -0.41 0.09 16 36 H 0.04 0.31 8.10 -51.93 -0.42 -0.12 16 37 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.16 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.16 0.98 8.02 -52.48 -0.42 0.56 16 40 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.09 0.72 5.78 -51.93 -0.30 0.42 16 42 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.09 0.86 6.02 -51.93 -0.31 0.55 16 LS Contribution 376.16 15.07 5.67 5.67 Total: -1.00 -32.93 376.16 -11.83 -44.75 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -6.38 Total: -2.84 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: -0.56 Total: -5.17 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: -0.87 Total: -39.01 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.09 Total: -10.45 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -4.81 SS G_CDS: -4.74 Total: -9.55 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.93 -11.83 -44.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413010939.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.756 kcal (2) G-P(sol) polarization free energy of solvation -32.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds