Wall clock time and date at job start Sat Apr 11 2020 05:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86802 * 120.00148 * 2 1 4 4 H 1.48504 * 109.47172 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47352 * 300.00703 * 3 2 1 6 6 H 1.48509 * 109.46835 * 60.00652 * 3 2 1 7 7 C 1.38819 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99672 * 163.06197 * 7 2 1 9 9 N 1.36934 * 119.99611 * 343.06512 * 7 2 1 10 10 C 1.46924 * 120.63421 * 331.84736 * 9 7 2 11 11 C 1.53189 * 108.77846 * 233.58871 * 10 9 7 12 12 C 1.53040 * 109.31447 * 305.36561 * 11 10 9 13 13 N 1.46497 * 109.46088 * 181.38446 * 12 11 10 14 14 C 1.34779 * 119.99618 * 154.97291 * 13 12 11 15 15 O 1.21280 * 120.00136 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99419 * 180.27238 * 14 13 12 17 17 C 1.50700 * 109.46732 * 179.72092 * 16 14 13 18 18 C 1.38235 * 120.01064 * 264.72458 * 17 16 14 19 19 C 1.38222 * 120.05058 * 179.77145 * 18 17 16 20 20 C 1.38262 * 120.06141 * 0.50651 * 19 18 17 21 21 C 1.38280 * 120.01044 * 359.74809 * 20 19 18 22 22 Cl 1.73593 * 120.02554 * 179.97438 * 21 20 19 23 23 C 1.38406 * 120.00212 * 85.00315 * 17 16 14 24 24 F 1.35100 * 120.03322 * 0.02562 * 23 17 16 25 25 C 1.53040 * 109.52597 * 61.36802 * 12 11 10 26 26 C 1.46927 * 120.62970 * 151.82815 * 9 7 2 27 27 H 0.97003 * 120.00144 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.58673 * 113.80027 * 10 9 7 29 29 H 1.09000 * 109.70299 * 353.44699 * 10 9 7 30 30 H 1.08997 * 109.50168 * 185.41138 * 11 10 9 31 31 H 1.09001 * 109.52168 * 65.33454 * 11 10 9 32 32 H 1.09001 * 109.45946 * 301.36078 * 12 11 10 33 33 H 0.97000 * 119.99993 * 334.96826 * 13 12 11 34 34 H 1.08992 * 109.47390 * 299.72516 * 16 14 13 35 35 H 1.08998 * 109.46962 * 59.72736 * 16 14 13 36 36 H 1.07999 * 119.97303 * 0.02562 * 18 17 16 37 37 H 1.07995 * 119.96929 * 180.25592 * 19 18 17 38 38 H 1.07994 * 119.99328 * 179.76965 * 20 19 18 39 39 H 1.09003 * 109.49756 * 58.58226 * 25 12 11 40 40 H 1.09004 * 109.49806 * 178.67852 * 25 12 11 41 41 H 1.08998 * 109.58724 * 246.19876 * 26 9 7 42 42 H 1.09007 * 109.58642 * 6.48249 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8915 2.3964 1.2127 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2223 -0.2730 9 7 1.3700 -2.3625 0.3444 10 6 0.2262 -2.3409 1.2662 11 6 0.4976 -3.3208 2.4120 12 6 0.8121 -4.7020 1.8329 13 7 1.0398 -5.6495 2.9268 14 6 0.8358 -6.9672 2.7303 15 8 0.4643 -7.3686 1.6478 16 6 1.0641 -7.9412 3.8574 17 6 0.7612 -9.3390 3.3824 18 6 -0.4868 -9.8898 3.6060 19 6 -0.7671 -11.1700 3.1665 20 6 0.2034 -11.9056 2.5119 21 6 1.4543 -11.3590 2.2916 22 17 2.6734 -12.2825 1.4703 23 6 1.7343 -10.0735 2.7274 24 9 2.9562 -9.5383 2.5138 25 6 2.0675 -4.6177 0.9618 26 6 1.8137 -3.6528 -0.2006 27 1 -0.4850 0.8401 0.0004 28 1 -0.6770 -2.6411 0.7349 29 1 0.0968 -1.3359 1.6678 30 1 -0.3829 -3.3861 3.0511 31 1 1.3471 -2.9698 2.9979 32 1 -0.0280 -5.0417 1.2272 33 1 1.3373 -5.3285 3.7924 34 1 2.1032 -7.8848 4.1815 35 1 0.4091 -7.6911 4.6920 36 1 -1.2447 -9.3180 4.1208 37 1 -1.7439 -11.5976 3.3383 38 1 -0.0156 -12.9071 2.1723 39 1 2.9024 -4.2542 1.5610 40 1 2.3046 -5.6063 0.5686 41 1 1.0401 -4.0600 -0.8516 42 1 2.7331 -3.5125 -0.7692 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589400405.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:34 Heat of formation + Delta-G solvation = -48.081833 kcal Electronic energy + Delta-G solvation = -26809.083544 eV Core-core repulsion = 22729.618971 eV Total energy + Delta-G solvation = -4079.464573 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.17201 -40.13148 -39.11763 -37.36327 -36.81498 -34.43389 -33.23916 -32.09247 -30.74871 -30.20031 -29.54857 -27.89232 -24.96712 -23.18702 -22.83071 -22.24174 -21.67471 -20.22759 -19.29666 -18.01454 -17.25819 -17.09614 -16.71867 -16.45842 -15.83623 -15.63418 -15.00825 -14.84309 -14.75195 -13.98570 -13.80793 -13.63880 -13.61905 -13.54708 -13.22127 -13.05624 -12.89355 -12.50308 -12.36212 -11.95378 -11.78249 -11.73696 -11.46864 -11.22918 -11.13319 -10.87139 -10.74164 -10.49032 -10.27950 -10.04607 -9.92928 -9.73787 -9.54235 -9.13061 -8.98314 -8.73728 -8.47168 -6.69315 -5.80595 -3.22729 0.64898 0.71243 1.70152 2.71559 2.98897 3.35742 3.44031 3.44986 3.46661 3.78915 4.10947 4.40008 4.48751 4.65579 4.73721 4.83723 4.93196 5.09758 5.30587 5.32860 5.41946 5.49297 5.52510 5.58779 5.61510 5.77124 5.86504 5.92985 6.06932 6.25986 6.31674 6.33792 6.51405 6.56419 6.57689 6.79852 6.89795 6.99170 7.30064 7.57144 7.68731 7.79479 8.34755 8.43647 9.19897 9.82995 10.40134 11.28400 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.025428 B = 0.002228 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.890436 B =12561.592104 C =13112.412710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.251 4.251 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.174 3.826 11 C -0.146 4.146 12 C 0.151 3.849 13 N -0.723 5.723 14 C 0.512 3.488 15 O -0.533 6.533 16 C -0.106 4.106 17 C -0.084 4.084 18 C -0.075 4.075 19 C -0.117 4.117 20 C -0.086 4.086 21 C -0.074 4.074 22 Cl -0.052 7.052 23 C 0.126 3.874 24 F -0.123 7.123 25 C -0.139 4.139 26 C 0.148 3.852 27 H 0.253 0.747 28 H 0.020 0.980 29 H 0.092 0.908 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.396 0.604 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.020 0.980 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.529 -23.268 12.321 26.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.381 4.381 8 H 0.084 0.916 9 N -0.316 5.316 10 C 0.048 3.952 11 C -0.186 4.186 12 C 0.048 3.952 13 N -0.373 5.373 14 C 0.297 3.703 15 O -0.410 6.410 16 C -0.146 4.146 17 C -0.086 4.086 18 C -0.093 4.093 19 C -0.135 4.135 20 C -0.104 4.104 21 C -0.101 4.101 22 Cl -0.023 7.023 23 C 0.105 3.895 24 F -0.101 7.101 25 C -0.179 4.179 26 C 0.021 3.979 27 H 0.063 0.937 28 H 0.039 0.961 29 H 0.110 0.890 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.230 0.770 34 H 0.125 0.875 35 H 0.129 0.871 36 H 0.156 0.844 37 H 0.158 0.842 38 H 0.160 0.840 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.038 0.962 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.734 -23.451 11.417 26.093 hybrid contribution 0.910 1.029 0.282 1.402 sum 0.175 -22.422 11.699 25.291 Atomic orbital electron populations 1.70032 1.05258 1.25415 1.54099 1.25059 0.95300 0.98440 1.00924 0.86227 0.79380 0.83923 0.77272 1.20256 1.21717 1.21568 1.19241 0.92615 0.84722 1.41480 0.91591 1.44101 1.35817 1.01682 1.49958 1.20737 0.88906 0.97902 0.87689 1.22533 1.00502 0.94730 1.00821 1.21055 0.98527 0.88189 0.87433 1.46324 1.68686 1.06369 1.15932 1.20291 0.77758 0.83098 0.89195 1.90737 1.45785 1.78190 1.26252 1.20658 1.05256 0.90163 0.98494 1.19319 0.93705 0.95352 1.00231 1.21031 0.94887 0.95224 0.98154 1.21131 0.99522 0.94380 0.98488 1.20973 0.90457 1.00808 0.98184 1.20954 0.93015 0.92580 1.03580 1.98388 1.54248 1.72530 1.77162 1.17190 0.81724 0.90825 0.99734 1.91542 1.40154 1.85877 1.92561 1.22371 0.97132 0.99552 0.98878 1.20874 0.97909 0.86519 0.92643 0.93657 0.96144 0.89014 0.92762 0.92159 0.90049 0.77043 0.87517 0.87112 0.84354 0.84250 0.84031 0.92320 0.92751 0.96213 0.92550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.03 11.19 55.49 0.62 -25.41 16 2 C 0.00 0.03 4.92 -17.43 -0.09 -0.05 16 3 Si 0.90 21.53 29.59 -169.99 -5.03 16.50 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.25 -6.87 9.58 -15.06 -0.14 -7.01 16 8 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 9 N -0.59 -14.84 2.99 -172.32 -0.52 -15.36 16 10 C 0.17 4.06 5.30 -3.71 -0.02 4.04 16 11 C -0.15 -2.61 5.55 -26.61 -0.15 -2.76 16 12 C 0.15 2.60 2.42 -67.89 -0.16 2.43 16 13 N -0.72 -9.64 5.08 -53.77 -0.27 -9.91 16 14 C 0.51 7.06 7.79 -10.98 -0.09 6.97 16 15 O -0.53 -9.71 15.70 5.56 0.09 -9.62 16 16 C -0.11 -0.99 5.61 -29.03 -0.16 -1.15 16 17 C -0.08 -0.89 4.38 -104.56 -0.46 -1.35 16 18 C -0.07 -0.63 9.68 -39.59 -0.38 -1.01 16 19 C -0.12 -0.86 10.04 -39.58 -0.40 -1.25 16 20 C -0.09 -0.71 9.83 -39.56 -0.39 -1.10 16 21 C -0.07 -0.80 6.33 -39.43 -0.25 -1.05 16 22 Cl -0.05 -0.55 28.62 -51.86 -1.48 -2.04 16 23 C 0.13 1.51 7.22 -39.39 -0.28 1.23 16 24 F -0.12 -1.66 16.14 2.25 0.04 -1.63 16 25 C -0.14 -2.58 5.65 -26.61 -0.15 -2.73 16 26 C 0.15 3.22 6.52 -3.71 -0.02 3.20 16 27 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.09 2.37 6.07 -51.93 -0.31 2.06 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.08 1.59 7.58 -51.93 -0.39 1.19 16 33 H 0.40 4.04 8.60 -40.82 -0.35 3.69 16 34 H 0.11 0.87 7.79 -51.93 -0.40 0.46 16 35 H 0.11 0.67 8.05 -51.93 -0.42 0.25 16 36 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 37 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 38 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 1.21 7.93 -51.92 -0.41 0.80 16 LS Contribution 366.66 15.07 5.53 5.53 Total: -1.00 -32.90 366.66 -9.82 -42.73 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -5.65 Total: 0.80 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -3.15 Total: -1.59 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: -0.17 Total: -50.67 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.09 Total: -9.62 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.48 Total: -2.04 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.90 -9.82 -42.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589400405.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.356 kcal (2) G-P(sol) polarization free energy of solvation -32.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds