Wall clock time and date at job start Sat Apr 11 2020 05:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86802 * 120.00148 * 2 1 4 4 H 1.48504 * 109.47172 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47352 * 300.00703 * 3 2 1 6 6 H 1.48509 * 109.46835 * 60.00652 * 3 2 1 7 7 C 1.38819 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99672 * 163.06197 * 7 2 1 9 9 N 1.36934 * 119.99611 * 343.06512 * 7 2 1 10 10 C 1.46924 * 120.63421 * 331.84736 * 9 7 2 11 11 C 1.53189 * 108.77846 * 233.58871 * 10 9 7 12 12 C 1.53040 * 109.31447 * 305.36561 * 11 10 9 13 13 N 1.46497 * 109.46088 * 181.38446 * 12 11 10 14 14 C 1.34779 * 119.99618 * 154.97291 * 13 12 11 15 15 O 1.21280 * 120.00136 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99419 * 180.27238 * 14 13 12 17 17 C 1.50700 * 109.46732 * 179.72092 * 16 14 13 18 18 C 1.38235 * 120.01064 * 264.72458 * 17 16 14 19 19 C 1.38222 * 120.05058 * 179.77145 * 18 17 16 20 20 C 1.38262 * 120.06141 * 0.50651 * 19 18 17 21 21 C 1.38280 * 120.01044 * 359.74809 * 20 19 18 22 22 Cl 1.73593 * 120.02554 * 179.97438 * 21 20 19 23 23 C 1.38406 * 120.00212 * 85.00315 * 17 16 14 24 24 F 1.35100 * 120.03322 * 0.02562 * 23 17 16 25 25 C 1.53040 * 109.52597 * 61.36802 * 12 11 10 26 26 C 1.46927 * 120.62970 * 151.82815 * 9 7 2 27 27 H 0.97003 * 120.00144 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.58673 * 113.80027 * 10 9 7 29 29 H 1.09000 * 109.70299 * 353.44699 * 10 9 7 30 30 H 1.08997 * 109.50168 * 185.41138 * 11 10 9 31 31 H 1.09001 * 109.52168 * 65.33454 * 11 10 9 32 32 H 1.09001 * 109.45946 * 301.36078 * 12 11 10 33 33 H 0.97000 * 119.99993 * 334.96826 * 13 12 11 34 34 H 1.08992 * 109.47390 * 299.72516 * 16 14 13 35 35 H 1.08998 * 109.46962 * 59.72736 * 16 14 13 36 36 H 1.07999 * 119.97303 * 0.02562 * 18 17 16 37 37 H 1.07995 * 119.96929 * 180.25592 * 19 18 17 38 38 H 1.07994 * 119.99328 * 179.76965 * 20 19 18 39 39 H 1.09003 * 109.49756 * 58.58226 * 25 12 11 40 40 H 1.09004 * 109.49806 * 178.67852 * 25 12 11 41 41 H 1.08998 * 109.58724 * 246.19876 * 26 9 7 42 42 H 1.09007 * 109.58642 * 6.48249 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8915 2.3964 1.2127 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2223 -0.2730 9 7 1.3700 -2.3625 0.3444 10 6 0.2262 -2.3409 1.2662 11 6 0.4976 -3.3208 2.4120 12 6 0.8121 -4.7020 1.8329 13 7 1.0398 -5.6495 2.9268 14 6 0.8358 -6.9672 2.7303 15 8 0.4643 -7.3686 1.6478 16 6 1.0641 -7.9412 3.8574 17 6 0.7612 -9.3390 3.3824 18 6 -0.4868 -9.8898 3.6060 19 6 -0.7671 -11.1700 3.1665 20 6 0.2034 -11.9056 2.5119 21 6 1.4543 -11.3590 2.2916 22 17 2.6734 -12.2825 1.4703 23 6 1.7343 -10.0735 2.7274 24 9 2.9562 -9.5383 2.5138 25 6 2.0675 -4.6177 0.9618 26 6 1.8137 -3.6528 -0.2006 27 1 -0.4850 0.8401 0.0004 28 1 -0.6770 -2.6411 0.7349 29 1 0.0968 -1.3359 1.6678 30 1 -0.3829 -3.3861 3.0511 31 1 1.3471 -2.9698 2.9979 32 1 -0.0280 -5.0417 1.2272 33 1 1.3373 -5.3285 3.7924 34 1 2.1032 -7.8848 4.1815 35 1 0.4091 -7.6911 4.6920 36 1 -1.2447 -9.3180 4.1208 37 1 -1.7439 -11.5976 3.3383 38 1 -0.0156 -12.9071 2.1723 39 1 2.9024 -4.2542 1.5610 40 1 2.3046 -5.6063 0.5686 41 1 1.0401 -4.0600 -0.8516 42 1 2.7331 -3.5125 -0.7692 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589400405.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:33 Heat of formation + Delta-G solvation = -67.726686 kcal Electronic energy + Delta-G solvation = -26809.935409 eV Core-core repulsion = 22729.618971 eV Total energy + Delta-G solvation = -4080.316438 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.05006 -41.16087 -40.00482 -38.89212 -37.60620 -35.99652 -34.17765 -33.70166 -31.83250 -31.41715 -31.24442 -28.82868 -26.78334 -24.17151 -23.89285 -23.79387 -22.91615 -21.39289 -20.90427 -18.96689 -18.70526 -17.96934 -17.85209 -17.46395 -16.93533 -16.74470 -16.59635 -16.05339 -15.59460 -15.46476 -15.36865 -14.97564 -14.70429 -14.55691 -14.47210 -14.30995 -14.05681 -13.98878 -13.41799 -13.19480 -13.03481 -12.69518 -12.62162 -12.53372 -12.48871 -12.41104 -12.22303 -12.01041 -11.96251 -11.89094 -11.56353 -11.37223 -10.92942 -10.57876 -10.00050 -9.86033 -9.70623 -8.72417 -7.89297 -5.35213 -0.02983 0.02036 0.95736 1.46865 1.48832 1.59676 1.66498 2.14257 2.50856 2.55053 3.07408 3.26633 3.39806 3.63458 3.81410 3.83749 3.96151 4.01728 4.08630 4.18466 4.30213 4.32056 4.44612 4.51520 4.62227 4.68131 4.81289 4.84218 4.90984 4.95266 5.02850 5.03192 5.14253 5.17392 5.27192 5.30142 5.46020 5.56285 5.63496 5.70377 5.71891 6.37603 6.62532 7.13252 7.31389 7.82159 8.35257 9.17930 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.025428 B = 0.002228 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.890436 B =12561.592104 C =13112.412710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.049 4.049 3 Si 0.969 3.031 4 H -0.268 1.268 5 H -0.294 1.294 6 H -0.286 1.286 7 C -0.264 4.264 8 H 0.066 0.934 9 N -0.609 5.609 10 C 0.178 3.822 11 C -0.127 4.127 12 C 0.163 3.837 13 N -0.710 5.710 14 C 0.510 3.490 15 O -0.581 6.581 16 C -0.096 4.096 17 C -0.101 4.101 18 C -0.076 4.076 19 C -0.109 4.109 20 C -0.086 4.086 21 C -0.092 4.092 22 Cl -0.062 7.062 23 C 0.092 3.908 24 F -0.142 7.142 25 C -0.124 4.124 26 C 0.145 3.855 27 H 0.251 0.749 28 H -0.006 1.006 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.416 0.584 34 H 0.120 0.880 35 H 0.153 0.847 36 H 0.166 0.834 37 H 0.175 0.825 38 H 0.164 0.836 39 H 0.066 0.934 40 H 0.053 0.947 41 H 0.005 0.995 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.863 -24.213 14.725 28.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.244 4.244 3 Si 0.797 3.203 4 H -0.192 1.192 5 H -0.221 1.221 6 H -0.212 1.212 7 C -0.394 4.394 8 H 0.083 0.917 9 N -0.333 5.333 10 C 0.051 3.949 11 C -0.166 4.166 12 C 0.058 3.942 13 N -0.362 5.362 14 C 0.297 3.703 15 O -0.461 6.461 16 C -0.135 4.135 17 C -0.102 4.102 18 C -0.094 4.094 19 C -0.127 4.127 20 C -0.105 4.105 21 C -0.120 4.120 22 Cl -0.033 7.033 23 C 0.072 3.928 24 F -0.120 7.120 25 C -0.164 4.164 26 C 0.019 3.981 27 H 0.061 0.939 28 H 0.012 0.988 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.253 0.747 34 H 0.138 0.862 35 H 0.171 0.829 36 H 0.184 0.816 37 H 0.192 0.808 38 H 0.181 0.819 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.023 0.977 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.043 -24.420 13.868 28.103 hybrid contribution 0.942 1.241 -0.526 1.644 sum -0.102 -23.180 13.342 26.746 Atomic orbital electron populations 1.70185 1.06674 1.25943 1.55303 1.25819 0.96069 1.01519 1.01042 0.85188 0.78554 0.79686 0.76868 1.19197 1.22113 1.21208 1.19540 0.92830 0.85845 1.41181 0.91657 1.44355 1.36024 1.02086 1.50785 1.20582 0.87594 0.97883 0.88805 1.22243 1.02120 0.93464 0.98818 1.20602 0.96796 0.88618 0.88158 1.46030 1.68556 1.05908 1.15709 1.21073 0.76217 0.83305 0.89668 1.90724 1.47882 1.78905 1.28575 1.20695 1.07144 0.88166 0.97491 1.19579 0.94242 0.95826 1.00565 1.21467 0.94497 0.95830 0.97607 1.21599 1.00541 0.93866 0.96692 1.21348 0.89603 1.01884 0.97650 1.21224 0.93858 0.92582 1.04327 1.98376 1.54915 1.72611 1.77440 1.17608 0.81782 0.91850 1.01585 1.91481 1.41321 1.86227 1.92981 1.22164 0.98120 0.98278 0.97874 1.20943 0.97191 0.86120 0.93876 0.93947 0.98822 0.91774 0.90088 0.91083 0.92541 0.74704 0.86181 0.82950 0.81602 0.80759 0.81869 0.91534 0.92831 0.97698 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.07 11.19 21.65 0.24 -54.83 16 2 C -0.05 -2.73 4.92 84.87 0.42 -2.31 16 3 Si 0.97 44.55 29.59 68.60 2.03 46.58 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 7 C -0.26 -14.60 9.58 84.04 0.81 -13.80 16 8 H 0.07 3.55 7.88 -2.91 -0.02 3.53 16 9 N -0.61 -31.03 2.99 -699.09 -2.09 -33.12 16 10 C 0.18 8.43 5.30 86.36 0.46 8.89 16 11 C -0.13 -4.37 5.55 30.67 0.17 -4.20 16 12 C 0.16 5.45 2.42 45.02 0.11 5.56 16 13 N -0.71 -17.22 5.08 -442.41 -2.25 -19.47 16 14 C 0.51 13.07 7.79 87.66 0.68 13.75 16 15 O -0.58 -20.85 15.70 -3.03 -0.05 -20.90 16 16 C -0.10 -1.50 5.61 29.10 0.16 -1.34 16 17 C -0.10 -1.91 4.38 -19.82 -0.09 -1.99 16 18 C -0.08 -1.03 9.68 22.27 0.22 -0.81 16 19 C -0.11 -1.23 10.04 22.27 0.22 -1.01 16 20 C -0.09 -1.26 9.83 22.29 0.22 -1.04 16 21 C -0.09 -1.94 6.33 22.37 0.14 -1.80 16 22 Cl -0.06 -1.33 28.62 -2.72 -0.08 -1.40 16 23 C 0.09 2.16 7.22 22.40 0.16 2.33 16 24 F -0.14 -3.88 16.14 44.97 0.73 -3.15 16 25 C -0.12 -4.56 5.65 30.67 0.17 -4.38 16 26 C 0.14 6.45 6.52 86.36 0.56 7.02 16 27 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 28 H -0.01 -0.33 8.14 -2.38 -0.02 -0.35 16 29 H 0.06 3.40 6.07 -2.39 -0.01 3.38 16 30 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.06 2.21 7.58 -2.39 -0.02 2.19 16 33 H 0.42 6.97 8.60 -92.71 -0.80 6.17 16 34 H 0.12 1.60 7.79 -2.39 -0.02 1.59 16 35 H 0.15 1.09 8.05 -2.39 -0.02 1.07 16 36 H 0.17 1.25 8.06 -2.91 -0.02 1.22 16 37 H 0.18 0.71 8.06 -2.91 -0.02 0.69 16 38 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 39 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 40 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 42 H 0.05 2.41 7.93 -2.38 -0.02 2.39 16 Total: -1.00 -74.74 366.66 3.20 -71.54 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: 0.25 Total: 9.91 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: 4.42 Total: 4.84 kcal Atomic # 7 Polarization: -103.32 SS G_CDS: -4.10 Total: -107.42 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.05 Total: -20.90 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.73 Total: -3.15 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -0.08 Total: -1.40 kcal Total: -74.74 3.20 -71.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589400405.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.813 kcal (2) G-P(sol) polarization free energy of solvation -74.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds