Wall clock time and date at job start Sat Apr 11 2020 05:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38345 * 119.91043 * 2 1 4 4 C 1.38551 * 120.28053 * 179.97438 * 3 2 1 5 5 F 1.35099 * 119.94993 * 179.97438 * 4 3 2 6 6 C 1.38201 * 120.09804 * 0.02562 * 4 3 2 7 7 C 1.39575 * 119.81981 * 359.97438 * 6 4 3 8 8 C 1.43204 * 120.14131 * 180.02562 * 7 6 4 9 9 N 4.80135 * 134.64730 * 179.97438 * 2 1 3 10 10 C 1.37931 * 119.90711 * 179.72515 * 2 1 3 11 11 S 1.76194 * 120.05465 * 0.02562 * 10 2 1 12 12 O 1.42098 * 106.40299 * 22.11282 * 11 10 2 13 13 O 1.42094 * 106.40332 * 155.03832 * 11 10 2 14 14 N 1.65611 * 107.22010 * 268.57678 * 11 10 2 15 15 C 1.46499 * 119.99720 * 64.99863 * 14 11 10 16 16 C 1.52998 * 109.47132 * 165.00386 * 15 14 11 17 17 C 1.53000 * 109.46912 * 299.99877 * 16 15 14 18 18 C 1.52998 * 109.47144 * 59.99494 * 16 15 14 19 19 C 1.50699 * 109.47341 * 179.97438 * 16 15 14 20 20 H 1.07996 * 120.00101 * 358.10918 * 19 16 15 21 21 C 1.37877 * 119.99827 * 178.10310 * 19 16 15 22 22 N 1.31517 * 119.99850 * 195.60391 * 21 19 16 23 23 Si 1.86795 * 120.00087 * 15.60201 * 21 19 16 24 24 H 1.48501 * 109.47166 * 84.51803 * 23 21 19 25 25 H 1.48506 * 109.47047 * 204.51679 * 23 21 19 26 26 H 1.48497 * 109.47360 * 324.51390 * 23 21 19 27 27 H 1.09001 * 109.46743 * 96.16534 * 1 2 3 28 28 H 1.08995 * 109.46955 * 216.17243 * 1 2 3 29 29 H 1.09003 * 109.46691 * 336.17079 * 1 2 3 30 30 H 1.08006 * 119.86014 * 359.97438 * 3 2 1 31 31 H 1.08003 * 120.08571 * 180.02562 * 6 4 3 32 32 H 0.96994 * 119.99796 * 244.99864 * 14 11 10 33 33 H 1.09005 * 109.47213 * 284.99845 * 15 14 11 34 34 H 1.09000 * 109.47568 * 44.99713 * 15 14 11 35 35 H 1.09002 * 109.46917 * 68.53191 * 17 16 15 36 36 H 1.09000 * 109.46966 * 188.53086 * 17 16 15 37 37 H 1.09000 * 109.47075 * 308.53106 * 17 16 15 38 38 H 1.09005 * 109.47094 * 60.00607 * 18 16 15 39 39 H 1.09000 * 109.47161 * 180.02562 * 18 16 15 40 40 H 1.09001 * 109.47535 * 300.00200 * 18 16 15 41 41 H 0.97005 * 120.00018 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1969 1.1992 0.0000 4 6 3.5824 1.2081 0.0005 5 9 4.2493 2.3831 0.0000 6 6 4.2832 0.0170 0.0005 7 6 3.5914 -1.1953 0.0005 8 6 4.3106 -2.4336 0.0011 9 7 4.8812 -3.4159 0.0015 10 6 2.1948 -1.1956 0.0057 11 16 1.3128 -2.7209 0.0124 12 8 0.0189 -2.4385 -0.5026 13 8 2.1820 -3.6895 -0.5581 14 7 1.1008 -3.1578 1.5957 15 6 0.2716 -2.3333 2.4782 16 6 -0.0681 -3.1233 3.7437 17 6 -0.8340 -4.3918 3.3626 18 6 1.2239 -3.5060 4.4683 19 6 -0.9205 -2.2750 4.6518 20 1 -1.1673 -1.2621 4.3701 21 6 -1.3854 -2.7921 5.8424 22 7 -2.3620 -2.1891 6.4845 23 14 -0.6282 -4.3492 6.5434 24 1 0.5877 -4.0014 7.3217 25 1 -1.6102 -5.0202 7.4328 26 1 -0.2604 -5.2641 5.4330 27 1 -0.3633 -0.1104 -1.0218 28 1 -0.3633 -0.8295 0.6065 29 1 -0.3633 0.9401 0.4152 30 1 1.6532 2.1324 -0.0004 31 1 5.3632 0.0242 0.0014 32 1 1.5256 -3.9595 1.9386 33 1 0.8173 -1.4295 2.7498 34 1 -0.6488 -2.0606 1.9620 35 1 -0.1678 -5.0734 2.8337 36 1 -1.2070 -4.8759 4.2652 37 1 -1.6727 -4.1299 2.7176 38 1 1.7696 -2.6022 4.7398 39 1 0.9819 -4.0692 5.3696 40 1 1.8408 -4.1194 3.8116 41 1 -2.6888 -2.5527 7.3223 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601436052.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:51 Heat of formation + Delta-G solvation = -39.079851 kcal Electronic energy + Delta-G solvation = -28236.694169 eV Core-core repulsion = 24159.663657 eV Total energy + Delta-G solvation = -4077.030511 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.50174 -39.94804 -37.78520 -37.30187 -36.40618 -35.89955 -33.42179 -33.22684 -31.62259 -31.36145 -27.58796 -26.39245 -25.80393 -24.84321 -24.67960 -22.85461 -19.70185 -19.39066 -19.10799 -18.07627 -17.42127 -17.35439 -16.66682 -16.19592 -16.13396 -15.64826 -15.23132 -14.71273 -14.43811 -14.32945 -14.09568 -13.89548 -13.61771 -13.55905 -13.42263 -13.07821 -12.97662 -12.89008 -12.67658 -12.41491 -12.15379 -12.05643 -11.97374 -11.87675 -11.83322 -11.69663 -11.44056 -10.89157 -10.48648 -10.29419 -10.19468 -10.06675 -9.60728 -9.38389 -9.22719 -9.16650 -8.71520 -8.47930 -6.21013 -4.17740 -0.12551 0.35097 0.45603 2.37718 2.41693 2.99823 3.18890 3.21972 3.26322 3.30562 3.36757 3.70670 3.73202 3.98793 4.31282 4.32399 4.42254 4.76141 4.88163 5.03096 5.10646 5.18188 5.36503 5.41134 5.44934 5.56751 5.79302 5.85917 5.95132 5.96301 6.06512 6.23480 6.33801 6.41217 6.53307 6.59468 6.65605 6.86044 7.12484 7.20428 7.21563 7.38508 7.67987 8.36595 8.82589 9.44268 10.91605 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.013537 B = 0.004102 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.852469 B = 6825.082336 C = 7330.840872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 C -0.154 4.154 4 C 0.160 3.840 5 F -0.124 7.124 6 C -0.140 4.140 7 C 0.118 3.882 8 C 0.219 3.781 9 N -0.347 5.347 10 C -0.661 4.661 11 S 2.685 3.315 12 O -0.943 6.943 13 O -0.958 6.958 14 N -1.108 6.108 15 C 0.133 3.867 16 C 0.037 3.963 17 C -0.147 4.147 18 C -0.149 4.149 19 C -0.517 4.517 20 H 0.078 0.922 21 C 0.079 3.921 22 N -0.888 5.888 23 Si 0.875 3.125 24 H -0.286 1.286 25 H -0.304 1.304 26 H -0.244 1.244 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.155 0.845 31 H 0.154 0.846 32 H 0.418 0.582 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.025 0.975 36 H 0.057 0.943 37 H 0.050 0.950 38 H 0.053 0.947 39 H 0.042 0.958 40 H 0.030 0.970 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.647 6.759 -13.191 17.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.058 3.942 3 C -0.174 4.174 4 C 0.140 3.860 5 F -0.102 7.102 6 C -0.163 4.163 7 C 0.114 3.886 8 C -0.098 4.098 9 N -0.022 5.022 10 C -0.748 4.748 11 S 2.771 3.229 12 O -0.932 6.932 13 O -0.948 6.948 14 N -0.871 5.871 15 C 0.009 3.991 16 C 0.034 3.966 17 C -0.204 4.204 18 C -0.206 4.206 19 C -0.555 4.555 20 H 0.096 0.904 21 C -0.124 4.124 22 N -0.524 5.524 23 Si 0.707 3.293 24 H -0.213 1.213 25 H -0.232 1.232 26 H -0.169 1.169 27 H 0.121 0.879 28 H 0.119 0.881 29 H 0.102 0.898 30 H 0.172 0.828 31 H 0.172 0.828 32 H 0.255 0.745 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.044 0.956 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.049 0.951 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.062 5.029 -13.840 17.835 hybrid contribution 0.992 0.216 1.116 1.509 sum 11.054 5.245 -12.724 17.652 Atomic orbital electron populations 1.21604 0.87675 1.05511 1.05889 1.19523 0.97266 0.89954 0.87469 1.21422 0.92171 1.00064 1.03726 1.17572 0.90224 0.80980 0.97179 1.91580 1.80615 1.44991 1.93049 1.21129 1.01493 0.89681 1.03952 1.14965 0.89608 0.87309 0.96751 1.25223 0.95284 0.92909 0.96373 1.81175 1.07909 1.08498 1.04613 1.31212 1.03758 1.21976 1.17842 1.02252 0.74166 0.73090 0.73349 1.93636 1.37178 1.84794 1.77624 1.93619 1.67276 1.57757 1.76113 1.55554 1.64017 1.37497 1.30081 1.21640 0.92878 0.92827 0.91789 1.18618 0.92924 0.93589 0.91456 1.22352 0.99562 0.97638 1.00856 1.22339 0.98631 1.00165 0.99447 1.20686 1.30918 1.00546 1.03307 0.90442 1.24930 0.93770 0.96709 0.97006 1.69957 1.24287 1.41212 1.16965 0.87500 0.78161 0.84868 0.78793 1.21324 1.23201 1.16945 0.87902 0.88077 0.89816 0.82780 0.82835 0.74500 0.92071 0.90179 0.95602 0.92415 0.93101 0.92779 0.93917 0.95134 0.92525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 8.33 36.01 0.30 -1.22 16 2 C 0.06 0.61 5.87 -104.69 -0.61 -0.01 16 3 C -0.15 -1.30 9.64 -39.43 -0.38 -1.68 16 4 C 0.16 1.40 7.29 -39.48 -0.29 1.11 16 5 F -0.12 -1.08 17.26 2.25 0.04 -1.04 16 6 C -0.14 -1.26 9.73 -39.10 -0.38 -1.64 16 7 C 0.12 1.34 5.73 -106.94 -0.61 0.73 16 8 C 0.22 2.95 12.56 -22.47 -0.28 2.67 16 9 N -0.35 -5.39 18.17 41.84 0.76 -4.63 16 10 C -0.66 -7.83 5.98 -39.16 -0.23 -8.07 16 11 S 2.68 37.71 5.22 -107.50 -0.56 37.15 16 12 O -0.94 -14.29 13.75 -57.17 -0.79 -15.08 16 13 O -0.96 -15.57 15.10 -57.17 -0.86 -16.43 16 14 N -1.11 -16.18 5.43 -10.61 -0.06 -16.24 16 15 C 0.13 2.20 4.24 -4.04 -0.02 2.18 16 16 C 0.04 0.74 0.51 -155.66 -0.08 0.66 16 17 C -0.15 -2.93 7.52 37.16 0.28 -2.65 16 18 C -0.15 -2.86 7.63 37.16 0.28 -2.57 16 19 C -0.52 -12.81 8.62 -34.44 -0.30 -13.11 16 20 H 0.08 2.05 7.99 -52.49 -0.42 1.63 16 21 C 0.08 2.09 5.30 -17.82 -0.09 2.00 16 22 N -0.89 -25.36 13.96 55.43 0.77 -24.59 16 23 Si 0.87 20.33 22.81 -169.99 -3.88 16.46 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.24 -5.20 4.59 56.52 0.26 -4.94 16 27 H 0.10 0.97 7.87 -51.93 -0.41 0.56 16 28 H 0.10 1.22 3.44 -51.93 -0.18 1.04 16 29 H 0.08 0.65 8.04 -51.93 -0.42 0.24 16 30 H 0.15 0.92 8.06 -52.48 -0.42 0.50 16 31 H 0.15 1.02 8.06 -52.48 -0.42 0.59 16 32 H 0.42 5.89 6.52 -34.48 -0.22 5.66 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.08 1.31 6.30 -51.93 -0.33 0.98 16 35 H 0.02 0.44 7.45 -51.93 -0.39 0.06 16 36 H 0.06 1.23 3.96 -51.93 -0.21 1.02 16 37 H 0.05 0.99 8.13 -51.93 -0.42 0.57 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.04 0.88 2.56 -51.93 -0.13 0.75 16 40 H 0.03 0.50 6.60 -51.93 -0.34 0.15 16 41 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 LS Contribution 339.00 15.07 5.11 5.11 Total: -1.00 -30.95 339.00 -6.32 -37.27 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -4.43 Total: 3.62 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: -2.42 Total: -21.60 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: 1.48 Total: -45.46 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -1.65 Total: -31.51 kcal Atomic # 9 Polarization: -1.08 SS G_CDS: 0.04 Total: -1.04 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -3.88 Total: 16.46 kcal Atomic # 16 Polarization: 37.71 SS G_CDS: -0.56 Total: 37.15 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.95 -6.32 -37.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601436052.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.809 kcal (2) G-P(sol) polarization free energy of solvation -30.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds