Wall clock time and date at job start Sat Apr 11 2020 05:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38345 * 119.91043 * 2 1 4 4 C 1.38551 * 120.28053 * 179.97438 * 3 2 1 5 5 F 1.35099 * 119.94993 * 179.97438 * 4 3 2 6 6 C 1.38201 * 120.09804 * 0.02562 * 4 3 2 7 7 C 1.39575 * 119.81981 * 359.97438 * 6 4 3 8 8 C 1.43204 * 120.14131 * 180.02562 * 7 6 4 9 9 N 4.80135 * 134.64730 * 179.97438 * 2 1 3 10 10 C 1.37931 * 119.90711 * 179.72515 * 2 1 3 11 11 S 1.76194 * 120.05465 * 0.02562 * 10 2 1 12 12 O 1.42098 * 106.40299 * 22.11282 * 11 10 2 13 13 O 1.42094 * 106.40332 * 155.03832 * 11 10 2 14 14 N 1.65611 * 107.22010 * 268.57678 * 11 10 2 15 15 C 1.46499 * 119.99720 * 64.99863 * 14 11 10 16 16 C 1.52998 * 109.47132 * 165.00386 * 15 14 11 17 17 C 1.53000 * 109.46912 * 299.99877 * 16 15 14 18 18 C 1.52998 * 109.47144 * 59.99494 * 16 15 14 19 19 C 1.50699 * 109.47341 * 179.97438 * 16 15 14 20 20 H 1.07996 * 120.00101 * 358.10918 * 19 16 15 21 21 C 1.37877 * 119.99827 * 178.10310 * 19 16 15 22 22 N 1.31517 * 119.99850 * 195.60391 * 21 19 16 23 23 Si 1.86795 * 120.00087 * 15.60201 * 21 19 16 24 24 H 1.48501 * 109.47166 * 84.51803 * 23 21 19 25 25 H 1.48506 * 109.47047 * 204.51679 * 23 21 19 26 26 H 1.48497 * 109.47360 * 324.51390 * 23 21 19 27 27 H 1.09001 * 109.46743 * 96.16534 * 1 2 3 28 28 H 1.08995 * 109.46955 * 216.17243 * 1 2 3 29 29 H 1.09003 * 109.46691 * 336.17079 * 1 2 3 30 30 H 1.08006 * 119.86014 * 359.97438 * 3 2 1 31 31 H 1.08003 * 120.08571 * 180.02562 * 6 4 3 32 32 H 0.96994 * 119.99796 * 244.99864 * 14 11 10 33 33 H 1.09005 * 109.47213 * 284.99845 * 15 14 11 34 34 H 1.09000 * 109.47568 * 44.99713 * 15 14 11 35 35 H 1.09002 * 109.46917 * 68.53191 * 17 16 15 36 36 H 1.09000 * 109.46966 * 188.53086 * 17 16 15 37 37 H 1.09000 * 109.47075 * 308.53106 * 17 16 15 38 38 H 1.09005 * 109.47094 * 60.00607 * 18 16 15 39 39 H 1.09000 * 109.47161 * 180.02562 * 18 16 15 40 40 H 1.09001 * 109.47535 * 300.00200 * 18 16 15 41 41 H 0.97005 * 120.00018 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1969 1.1992 0.0000 4 6 3.5824 1.2081 0.0005 5 9 4.2493 2.3831 0.0000 6 6 4.2832 0.0170 0.0005 7 6 3.5914 -1.1953 0.0005 8 6 4.3106 -2.4336 0.0011 9 7 4.8812 -3.4159 0.0015 10 6 2.1948 -1.1956 0.0057 11 16 1.3128 -2.7209 0.0124 12 8 0.0189 -2.4385 -0.5026 13 8 2.1820 -3.6895 -0.5581 14 7 1.1008 -3.1578 1.5957 15 6 0.2716 -2.3333 2.4782 16 6 -0.0681 -3.1233 3.7437 17 6 -0.8340 -4.3918 3.3626 18 6 1.2239 -3.5060 4.4683 19 6 -0.9205 -2.2750 4.6518 20 1 -1.1673 -1.2621 4.3701 21 6 -1.3854 -2.7921 5.8424 22 7 -2.3620 -2.1891 6.4845 23 14 -0.6282 -4.3492 6.5434 24 1 0.5877 -4.0014 7.3217 25 1 -1.6102 -5.0202 7.4328 26 1 -0.2604 -5.2641 5.4330 27 1 -0.3633 -0.1104 -1.0218 28 1 -0.3633 -0.8295 0.6065 29 1 -0.3633 0.9401 0.4152 30 1 1.6532 2.1324 -0.0004 31 1 5.3632 0.0242 0.0014 32 1 1.5256 -3.9595 1.9386 33 1 0.8173 -1.4295 2.7498 34 1 -0.6488 -2.0606 1.9620 35 1 -0.1678 -5.0734 2.8337 36 1 -1.2070 -4.8759 4.2652 37 1 -1.6727 -4.1299 2.7176 38 1 1.7696 -2.6022 4.7398 39 1 0.9819 -4.0692 5.3696 40 1 1.8408 -4.1194 3.8116 41 1 -2.6888 -2.5527 7.3223 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601436052.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:51 Heat of formation + Delta-G solvation = -60.549941 kcal Electronic energy + Delta-G solvation = -28237.625182 eV Core-core repulsion = 24159.663657 eV Total energy + Delta-G solvation = -4077.961524 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.18640 -40.75123 -39.06519 -38.64778 -37.47391 -37.06491 -34.94835 -34.09204 -33.13841 -32.40951 -28.36744 -27.94495 -27.30354 -26.47989 -25.68094 -23.65023 -21.01809 -20.76081 -19.98463 -19.15622 -18.47490 -18.22679 -17.91477 -17.40668 -17.03692 -16.86451 -16.81426 -15.85662 -15.46220 -15.29745 -15.12904 -14.99704 -14.75327 -14.61175 -14.43099 -14.38467 -14.32823 -14.15239 -13.95662 -13.73349 -13.68411 -13.36001 -13.22298 -13.10806 -12.79346 -12.59837 -12.52022 -12.32250 -11.98161 -11.89139 -11.76506 -11.68640 -11.01129 -10.53666 -10.50099 -10.38748 -10.24371 -10.13541 -8.24899 -6.22325 -0.98981 -0.67868 -0.31934 1.37597 1.40608 1.42682 1.50577 1.55410 1.90496 2.27755 2.34348 2.39117 2.65627 2.97511 3.07941 3.12323 3.52560 3.73553 3.87550 4.03587 4.08851 4.30237 4.38403 4.44709 4.49006 4.54634 4.58901 4.77902 4.81780 4.86731 4.93048 4.99064 5.05149 5.09835 5.14184 5.28638 5.33647 5.50545 5.58482 5.76904 5.84886 6.01712 6.21273 6.38828 6.82631 7.42460 8.90919 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.013537 B = 0.004102 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.852469 B = 6825.082336 C = 7330.840872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.056 3.944 3 C -0.139 4.139 4 C 0.165 3.835 5 F -0.120 7.120 6 C -0.125 4.125 7 C 0.102 3.898 8 C 0.237 3.763 9 N -0.392 5.392 10 C -0.666 4.666 11 S 2.695 3.305 12 O -0.959 6.959 13 O -0.982 6.982 14 N -1.107 6.107 15 C 0.142 3.858 16 C 0.029 3.971 17 C -0.150 4.150 18 C -0.151 4.151 19 C -0.505 4.505 20 H 0.050 0.950 21 C 0.025 3.975 22 N -0.939 5.939 23 Si 0.921 3.079 24 H -0.285 1.285 25 H -0.319 1.319 26 H -0.211 1.211 27 H 0.107 0.893 28 H 0.080 0.920 29 H 0.107 0.893 30 H 0.184 0.816 31 H 0.178 0.822 32 H 0.421 0.579 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.053 0.947 36 H 0.042 0.958 37 H 0.047 0.953 38 H 0.058 0.942 39 H 0.029 0.971 40 H 0.062 0.938 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.416 7.717 -14.433 19.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.054 3.946 3 C -0.159 4.159 4 C 0.145 3.855 5 F -0.098 7.098 6 C -0.146 4.146 7 C 0.097 3.903 8 C -0.080 4.080 9 N -0.067 5.067 10 C -0.756 4.756 11 S 2.786 3.214 12 O -0.949 6.949 13 O -0.972 6.972 14 N -0.870 5.870 15 C 0.017 3.983 16 C 0.027 3.973 17 C -0.207 4.207 18 C -0.208 4.208 19 C -0.543 4.543 20 H 0.068 0.932 21 C -0.173 4.173 22 N -0.579 5.579 23 Si 0.752 3.248 24 H -0.213 1.213 25 H -0.249 1.249 26 H -0.135 1.135 27 H 0.125 0.875 28 H 0.098 0.902 29 H 0.126 0.874 30 H 0.202 0.798 31 H 0.196 0.804 32 H 0.258 0.742 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.047 0.953 40 H 0.080 0.920 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.839 5.939 -15.107 20.091 hybrid contribution 0.443 0.124 1.404 1.478 sum 12.281 6.063 -13.703 19.374 Atomic orbital electron populations 1.21656 0.87719 1.05963 1.05972 1.19574 0.97302 0.90002 0.87706 1.21706 0.92236 1.00488 1.01468 1.17574 0.90326 0.80947 0.96618 1.91604 1.80555 1.44702 1.92904 1.21349 1.02745 0.88768 1.01782 1.14957 0.89280 0.87220 0.98834 1.25550 0.94459 0.92913 0.95040 1.81180 1.09349 1.09682 1.06483 1.30754 1.03836 1.21118 1.19865 1.01633 0.73691 0.73370 0.72711 1.93620 1.38264 1.85169 1.77804 1.93596 1.67743 1.59438 1.76374 1.55423 1.63970 1.37702 1.29937 1.21399 0.93560 0.92867 0.90468 1.18626 0.92893 0.93483 0.92347 1.22335 1.00085 0.97883 1.00405 1.22302 0.98331 1.00888 0.99262 1.21031 1.30058 0.99874 1.03382 0.93164 1.25631 0.94218 0.99655 0.97766 1.70092 1.26608 1.43484 1.17721 0.86749 0.76841 0.82499 0.78695 1.21283 1.24879 1.13478 0.87509 0.90169 0.87413 0.79822 0.80439 0.74189 0.90671 0.90333 0.92792 0.93917 0.93388 0.92295 0.95282 0.91964 0.92944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 8.33 71.24 0.59 -2.24 16 2 C 0.06 0.99 5.87 -19.91 -0.12 0.87 16 3 C -0.14 -1.81 9.64 22.37 0.22 -1.59 16 4 C 0.17 2.24 7.29 22.34 0.16 2.40 16 5 F -0.12 -1.60 17.26 44.97 0.78 -0.82 16 6 C -0.12 -1.81 9.73 22.58 0.22 -1.59 16 7 C 0.10 2.07 5.73 -21.37 -0.12 1.95 16 8 C 0.24 6.06 12.56 88.33 1.11 7.17 16 9 N -0.39 -11.86 18.17 19.00 0.35 -11.51 16 10 C -0.67 -14.39 5.98 22.54 0.13 -14.25 16 11 S 2.70 72.42 5.22 -56.49 -0.30 72.13 16 12 O -0.96 -28.24 13.75 -128.00 -1.76 -30.00 16 13 O -0.98 -31.13 15.10 -128.00 -1.93 -33.06 16 14 N -1.11 -30.37 5.43 -187.49 -1.02 -31.39 16 15 C 0.14 4.48 4.24 86.38 0.37 4.84 16 16 C 0.03 1.12 0.51 -52.93 -0.03 1.10 16 17 C -0.15 -5.70 7.52 71.98 0.54 -5.16 16 18 C -0.15 -5.40 7.63 71.98 0.55 -4.86 16 19 C -0.50 -25.12 8.62 25.60 0.22 -24.89 16 20 H 0.05 2.71 7.99 -2.91 -0.02 2.69 16 21 C 0.03 1.36 5.30 84.65 0.45 1.81 16 22 N -0.94 -55.31 13.96 21.45 0.30 -55.01 16 23 Si 0.92 41.80 22.81 68.60 1.56 43.36 16 24 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 25 H -0.32 -15.17 7.11 99.48 0.71 -14.46 16 26 H -0.21 -8.40 4.59 99.48 0.46 -7.94 16 27 H 0.11 1.82 7.87 -2.39 -0.02 1.80 16 28 H 0.08 1.83 3.44 -2.39 -0.01 1.82 16 29 H 0.11 1.37 8.04 -2.39 -0.02 1.35 16 30 H 0.18 1.29 8.06 -2.91 -0.02 1.27 16 31 H 0.18 1.68 8.06 -2.91 -0.02 1.65 16 32 H 0.42 10.90 6.52 -96.75 -0.63 10.27 16 33 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 34 H 0.08 2.50 6.30 -2.39 -0.02 2.49 16 35 H 0.05 1.73 7.45 -2.39 -0.02 1.71 16 36 H 0.04 1.74 3.96 -2.39 -0.01 1.73 16 37 H 0.05 1.82 8.13 -2.39 -0.02 1.80 16 38 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 39 H 0.03 1.12 2.56 -2.39 -0.01 1.12 16 40 H 0.06 1.82 6.60 -2.39 -0.02 1.81 16 41 H 0.26 14.75 8.31 -92.70 -0.77 13.98 16 Total: -1.00 -68.13 339.00 2.51 -65.63 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.23 Total: 15.14 kcal Atomic # 6 Polarization: -38.76 SS G_CDS: 4.29 Total: -34.46 kcal Atomic # 7 Polarization: -97.54 SS G_CDS: -0.37 Total: -97.91 kcal Atomic # 8 Polarization: -59.37 SS G_CDS: -3.69 Total: -63.06 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.78 Total: -0.82 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 1.56 Total: 43.36 kcal Atomic # 16 Polarization: 72.42 SS G_CDS: -0.30 Total: 72.13 kcal Total: -68.13 2.51 -65.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601436052.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.076 kcal (2) G-P(sol) polarization free energy of solvation -68.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds