Wall clock time and date at job start Sat Apr 11 2020 05:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86801 * 120.00042 * 2 1 4 4 H 1.48502 * 109.46954 * 270.00098 * 3 2 1 5 5 H 1.48500 * 109.47126 * 29.99869 * 3 2 1 6 6 H 1.48495 * 109.47444 * 150.00054 * 3 2 1 7 7 C 1.37869 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00160 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00347 * 180.02562 * 7 2 1 10 10 N 1.46897 * 109.47464 * 180.02562 * 9 7 2 11 11 C 1.46899 * 111.00406 * 169.99983 * 10 9 7 12 12 C 1.53236 * 109.34238 * 187.25665 * 11 10 9 13 13 N 1.47082 * 108.51777 * 306.16718 * 12 11 10 14 14 C 1.34784 * 120.87969 * 231.18993 * 13 12 11 15 15 O 1.21279 * 119.99925 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99961 * 180.02562 * 14 13 12 17 17 C 1.50697 * 109.47266 * 180.02562 * 16 14 13 18 18 C 1.38236 * 120.00113 * 264.72353 * 17 16 14 19 19 C 1.38230 * 120.04664 * 179.76682 * 18 17 16 20 20 C 1.38259 * 120.05639 * 0.50932 * 19 18 17 21 21 C 1.38276 * 120.01695 * 359.74279 * 20 19 18 22 22 Cl 1.73603 * 120.02609 * 179.97438 * 21 20 19 23 23 C 1.38403 * 120.00710 * 84.99820 * 17 16 14 24 24 F 1.35094 * 120.02958 * 359.97438 * 23 17 16 25 25 C 1.47077 * 118.24009 * 51.45917 * 13 12 11 26 26 C 1.46901 * 111.00064 * 294.30071 * 10 9 7 27 27 H 0.97005 * 120.00037 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.47339 * 59.99685 * 9 7 2 29 29 H 1.09005 * 109.46529 * 299.99885 * 9 7 2 30 30 H 1.08999 * 109.49144 * 67.28658 * 11 10 9 31 31 H 1.09006 * 109.48871 * 307.21098 * 11 10 9 32 32 H 1.09002 * 109.62922 * 186.46386 * 12 11 10 33 33 H 1.08992 * 109.63368 * 65.87381 * 12 11 10 34 34 H 1.09004 * 109.46932 * 300.00223 * 16 14 13 35 35 H 1.08997 * 109.47392 * 59.99562 * 16 14 13 36 36 H 1.07994 * 119.97924 * 359.97438 * 18 17 16 37 37 H 1.07999 * 119.97070 * 180.24900 * 19 18 17 38 38 H 1.08006 * 119.98964 * 179.76637 * 20 19 18 39 39 H 1.09000 * 109.62570 * 68.25311 * 25 13 12 40 40 H 1.09001 * 109.63406 * 188.83114 * 25 13 12 41 41 H 1.09003 * 109.49313 * 292.70979 * 26 10 9 42 42 H 1.08999 * 109.49135 * 52.78641 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 4.0012 -2.5789 0.0010 11 6 5.4501 -2.6251 -0.2366 12 6 5.8899 -4.0827 -0.4096 13 7 5.4259 -4.8520 0.7549 14 6 6.2758 -5.6320 1.4520 15 8 7.4402 -5.7066 1.1213 16 6 5.7789 -6.4122 2.6418 17 6 6.9183 -7.1965 3.2397 18 6 7.1133 -8.5166 2.8787 19 6 8.1611 -9.2355 3.4229 20 6 9.0094 -8.6385 4.3370 21 6 8.8136 -7.3197 4.7038 22 17 9.8783 -6.5702 5.8520 23 6 7.7664 -6.5970 4.1545 24 9 7.5736 -5.3084 4.5116 25 6 4.0085 -4.7523 1.1350 26 6 3.6441 -3.2637 1.2506 27 1 -0.4850 0.8401 -0.0004 28 1 3.8745 -0.6800 0.8910 29 1 3.8751 -0.6803 -0.8889 30 1 5.9722 -2.1859 0.6135 31 1 5.6886 -2.0636 -1.1400 32 1 6.9770 -4.1323 -0.4716 33 1 5.4494 -4.4928 -1.3183 34 1 5.3814 -5.7237 3.3875 35 1 4.9928 -7.0973 2.3244 36 1 6.4485 -8.9856 2.1685 37 1 8.3146 -10.2655 3.1370 38 1 9.8255 -9.2023 4.7644 39 1 3.3907 -5.2255 0.3718 40 1 3.8511 -5.2448 2.0946 41 1 4.1914 -2.8157 2.0801 42 1 2.5728 -3.1654 1.4259 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602202226.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:55 Heat of formation + Delta-G solvation = -46.495655 kcal Electronic energy + Delta-G solvation = -26943.282654 eV Core-core repulsion = 22863.886863 eV Total energy + Delta-G solvation = -4079.395791 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.18380 -40.34872 -39.27467 -37.63966 -36.84826 -34.53959 -33.32324 -32.40975 -30.95323 -30.75791 -29.02373 -27.91947 -25.59440 -23.51629 -23.18212 -22.65713 -21.59275 -20.52895 -18.79961 -17.97951 -17.30513 -17.12251 -16.86427 -16.52501 -15.94972 -15.57640 -15.32288 -14.85908 -14.70183 -14.57935 -14.22069 -13.81929 -13.68265 -13.63976 -13.57226 -13.26518 -13.17051 -12.62473 -12.43937 -12.21260 -11.99083 -11.80909 -11.74463 -11.58419 -11.25809 -11.21293 -11.13147 -10.83604 -10.61985 -10.37618 -9.95516 -9.87386 -9.38403 -9.16589 -9.00316 -8.63947 -8.57532 -7.51407 -6.12423 -4.10560 0.62816 0.69233 1.68028 2.59221 2.88411 3.20557 3.24184 3.32152 3.34088 3.77075 4.09040 4.36113 4.37815 4.51143 4.57680 4.64805 4.71987 4.89500 5.09781 5.14965 5.19376 5.28350 5.31241 5.41749 5.49302 5.53469 5.59200 5.65531 5.73700 5.75691 5.90857 5.92653 6.13028 6.30517 6.32020 6.37925 6.54129 6.76511 6.88130 7.41625 7.49005 7.76907 7.90589 8.14449 8.55802 8.94155 9.49208 11.00315 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.020278 B = 0.002409 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.488056 B =11619.540073 C =12146.485272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.874 3.126 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.512 4.512 8 H 0.082 0.918 9 C 0.162 3.838 10 N -0.526 5.526 11 C 0.038 3.962 12 C 0.119 3.881 13 N -0.607 5.607 14 C 0.517 3.483 15 O -0.543 6.543 16 C -0.104 4.104 17 C -0.084 4.084 18 C -0.074 4.074 19 C -0.117 4.117 20 C -0.086 4.086 21 C -0.074 4.074 22 Cl -0.052 7.052 23 C 0.125 3.875 24 F -0.123 7.123 25 C 0.108 3.892 26 C 0.048 3.952 27 H 0.264 0.736 28 H -0.011 1.011 29 H 0.026 0.974 30 H 0.028 0.972 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.027 0.973 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.501 -19.605 8.601 26.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.132 4.132 3 Si 0.701 3.299 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.550 4.550 8 H 0.100 0.900 9 C 0.036 3.964 10 N -0.251 5.251 11 C -0.092 4.092 12 C -0.003 4.003 13 N -0.341 5.341 14 C 0.305 3.695 15 O -0.420 6.420 16 C -0.144 4.144 17 C -0.086 4.086 18 C -0.092 4.092 19 C -0.135 4.135 20 C -0.104 4.104 21 C -0.101 4.101 22 Cl -0.023 7.023 23 C 0.105 3.895 24 F -0.101 7.101 25 C -0.015 4.015 26 C -0.081 4.081 27 H 0.074 0.926 28 H 0.007 0.993 29 H 0.044 0.956 30 H 0.046 0.954 31 H 0.100 0.900 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.127 0.873 35 H 0.131 0.869 36 H 0.157 0.843 37 H 0.158 0.842 38 H 0.160 0.840 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.045 0.955 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 15.811 -19.623 8.155 26.486 hybrid contribution 0.731 1.869 0.802 2.161 sum 16.542 -17.754 8.957 25.866 Atomic orbital electron populations 1.69881 1.06111 1.26953 1.50763 1.24883 0.94733 0.98870 0.94716 0.86880 0.80301 0.84034 0.78654 1.20091 1.21153 1.19316 1.20992 0.88550 0.94737 1.50752 0.90040 1.20181 0.97178 0.83756 0.95255 1.61899 1.10108 1.19293 1.33803 1.22462 0.90345 0.95402 1.00957 1.21734 1.00220 0.90794 0.87545 1.48226 1.10204 1.45224 1.30412 1.20289 0.85835 0.79673 0.83721 1.90697 1.17189 1.64937 1.69228 1.20665 0.96878 0.99664 0.97195 1.19348 0.97190 0.95088 0.96979 1.21033 0.97637 0.92428 0.98145 1.21131 0.94766 1.00736 0.96910 1.20970 1.00013 0.91954 0.97494 1.20953 0.95205 0.95017 0.98969 1.98389 1.63861 1.82154 1.57942 1.17204 0.95553 0.79420 0.97303 1.91548 1.94324 1.33972 1.90260 1.22154 0.80297 0.98354 1.00721 1.22459 1.03096 0.91601 0.90915 0.92576 0.99314 0.95606 0.95425 0.89996 0.89334 0.90708 0.87271 0.86858 0.84323 0.84240 0.84034 0.90110 0.90021 0.95519 0.87796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.69 13.96 55.43 0.77 -25.91 16 2 C 0.07 1.96 5.47 -17.83 -0.10 1.86 16 3 Si 0.87 21.04 27.47 -169.99 -4.67 16.37 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.51 -13.87 8.96 -34.44 -0.31 -14.18 16 8 H 0.08 2.37 7.37 -52.48 -0.39 1.98 16 9 C 0.16 3.78 3.79 -4.98 -0.02 3.76 16 10 N -0.53 -10.32 4.62 -235.47 -1.09 -11.41 16 11 C 0.04 0.63 5.62 -3.70 -0.02 0.61 16 12 C 0.12 1.76 6.60 -3.60 -0.02 1.73 16 13 N -0.61 -8.51 3.00 -172.18 -0.52 -9.03 16 14 C 0.52 7.19 7.70 -10.98 -0.08 7.10 16 15 O -0.54 -9.30 15.49 5.56 0.09 -9.22 16 16 C -0.10 -1.06 3.97 -29.04 -0.12 -1.17 16 17 C -0.08 -0.90 4.38 -104.56 -0.46 -1.36 16 18 C -0.07 -0.61 9.68 -39.58 -0.38 -0.99 16 19 C -0.12 -0.82 10.04 -39.58 -0.40 -1.22 16 20 C -0.09 -0.69 9.83 -39.56 -0.39 -1.08 16 21 C -0.07 -0.79 6.33 -39.44 -0.25 -1.04 16 22 Cl -0.05 -0.55 28.62 -51.86 -1.48 -2.04 16 23 C 0.13 1.53 7.22 -39.39 -0.28 1.24 16 24 F -0.12 -1.71 16.14 2.25 0.04 -1.67 16 25 C 0.11 1.40 6.53 -3.37 -0.02 1.38 16 26 C 0.05 0.83 5.47 -3.46 -0.02 0.81 16 27 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 28 H -0.01 -0.26 7.18 -51.93 -0.37 -0.63 16 29 H 0.03 0.61 7.40 -51.93 -0.38 0.22 16 30 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 1.30 7.99 -51.93 -0.41 0.88 16 32 H 0.09 1.31 7.06 -51.93 -0.37 0.94 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.11 1.05 7.32 -51.93 -0.38 0.67 16 35 H 0.11 0.80 7.90 -51.93 -0.41 0.39 16 36 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 38 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 39 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.08 0.80 6.02 -51.93 -0.31 0.49 16 41 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.10 1.96 6.67 -51.93 -0.35 1.62 16 LS Contribution 361.59 15.07 5.45 5.45 Total: -1.00 -32.84 361.59 -9.79 -42.63 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -5.50 Total: -2.62 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -2.87 Total: -2.54 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: -0.83 Total: -46.35 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.22 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.67 Total: 16.37 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.48 Total: -2.04 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.84 -9.79 -42.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602202226.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.867 kcal (2) G-P(sol) polarization free energy of solvation -32.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds