Wall clock time and date at job start Sat Apr 11 2020 05:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86801 * 120.00042 * 2 1 4 4 H 1.48502 * 109.46954 * 270.00098 * 3 2 1 5 5 H 1.48500 * 109.47126 * 29.99869 * 3 2 1 6 6 H 1.48495 * 109.47444 * 150.00054 * 3 2 1 7 7 C 1.37869 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00160 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00347 * 180.02562 * 7 2 1 10 10 N 1.46897 * 109.47464 * 180.02562 * 9 7 2 11 11 C 1.46899 * 111.00406 * 169.99983 * 10 9 7 12 12 C 1.53236 * 109.34238 * 187.25665 * 11 10 9 13 13 N 1.47082 * 108.51777 * 306.16718 * 12 11 10 14 14 C 1.34784 * 120.87969 * 231.18993 * 13 12 11 15 15 O 1.21279 * 119.99925 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99961 * 180.02562 * 14 13 12 17 17 C 1.50697 * 109.47266 * 180.02562 * 16 14 13 18 18 C 1.38236 * 120.00113 * 264.72353 * 17 16 14 19 19 C 1.38230 * 120.04664 * 179.76682 * 18 17 16 20 20 C 1.38259 * 120.05639 * 0.50932 * 19 18 17 21 21 C 1.38276 * 120.01695 * 359.74279 * 20 19 18 22 22 Cl 1.73603 * 120.02609 * 179.97438 * 21 20 19 23 23 C 1.38403 * 120.00710 * 84.99820 * 17 16 14 24 24 F 1.35094 * 120.02958 * 359.97438 * 23 17 16 25 25 C 1.47077 * 118.24009 * 51.45917 * 13 12 11 26 26 C 1.46901 * 111.00064 * 294.30071 * 10 9 7 27 27 H 0.97005 * 120.00037 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.47339 * 59.99685 * 9 7 2 29 29 H 1.09005 * 109.46529 * 299.99885 * 9 7 2 30 30 H 1.08999 * 109.49144 * 67.28658 * 11 10 9 31 31 H 1.09006 * 109.48871 * 307.21098 * 11 10 9 32 32 H 1.09002 * 109.62922 * 186.46386 * 12 11 10 33 33 H 1.08992 * 109.63368 * 65.87381 * 12 11 10 34 34 H 1.09004 * 109.46932 * 300.00223 * 16 14 13 35 35 H 1.08997 * 109.47392 * 59.99562 * 16 14 13 36 36 H 1.07994 * 119.97924 * 359.97438 * 18 17 16 37 37 H 1.07999 * 119.97070 * 180.24900 * 19 18 17 38 38 H 1.08006 * 119.98964 * 179.76637 * 20 19 18 39 39 H 1.09000 * 109.62570 * 68.25311 * 25 13 12 40 40 H 1.09001 * 109.63406 * 188.83114 * 25 13 12 41 41 H 1.09003 * 109.49313 * 292.70979 * 26 10 9 42 42 H 1.08999 * 109.49135 * 52.78641 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 4.0012 -2.5789 0.0010 11 6 5.4501 -2.6251 -0.2366 12 6 5.8899 -4.0827 -0.4096 13 7 5.4259 -4.8520 0.7549 14 6 6.2758 -5.6320 1.4520 15 8 7.4402 -5.7066 1.1213 16 6 5.7789 -6.4122 2.6418 17 6 6.9183 -7.1965 3.2397 18 6 7.1133 -8.5166 2.8787 19 6 8.1611 -9.2355 3.4229 20 6 9.0094 -8.6385 4.3370 21 6 8.8136 -7.3197 4.7038 22 17 9.8783 -6.5702 5.8520 23 6 7.7664 -6.5970 4.1545 24 9 7.5736 -5.3084 4.5116 25 6 4.0085 -4.7523 1.1350 26 6 3.6441 -3.2637 1.2506 27 1 -0.4850 0.8401 -0.0004 28 1 3.8745 -0.6800 0.8910 29 1 3.8751 -0.6803 -0.8889 30 1 5.9722 -2.1859 0.6135 31 1 5.6886 -2.0636 -1.1400 32 1 6.9770 -4.1323 -0.4716 33 1 5.4494 -4.4928 -1.3183 34 1 5.3814 -5.7237 3.3875 35 1 4.9928 -7.0973 2.3244 36 1 6.4485 -8.9856 2.1685 37 1 8.3146 -10.2655 3.1370 38 1 9.8255 -9.2023 4.7644 39 1 3.3907 -5.2255 0.3718 40 1 3.8511 -5.2448 2.0946 41 1 4.1914 -2.8157 2.0801 42 1 2.5728 -3.1654 1.4259 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602202226.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:55 Heat of formation + Delta-G solvation = -67.247339 kcal Electronic energy + Delta-G solvation = -26944.182515 eV Core-core repulsion = 22863.886863 eV Total energy + Delta-G solvation = -4080.295652 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.07915 -41.38939 -40.08183 -38.94103 -37.61707 -35.98996 -34.50476 -34.00713 -32.17085 -31.42348 -30.57558 -28.97806 -27.06710 -24.74780 -23.90103 -23.77033 -22.99343 -21.86527 -19.94606 -18.95016 -18.75170 -18.35814 -17.89051 -17.34503 -16.89276 -16.59651 -16.54101 -16.34983 -16.06174 -15.73002 -15.47286 -15.19967 -14.77077 -14.59645 -14.53600 -14.42956 -14.30265 -14.00397 -13.70833 -13.32173 -13.19300 -12.89713 -12.72781 -12.55799 -12.48843 -12.42738 -12.31383 -12.22729 -11.97289 -11.94505 -11.85863 -11.42484 -10.97370 -10.78285 -9.87177 -9.79520 -9.71897 -9.09363 -8.28644 -6.31282 -0.03997 0.00627 0.94526 1.33850 1.35574 1.44818 1.54269 1.91760 2.33186 2.45956 3.03798 3.05723 3.13640 3.36425 3.54657 3.79126 3.95339 3.99580 4.03848 4.15301 4.20071 4.25614 4.28359 4.40316 4.45346 4.52014 4.66027 4.71646 4.79438 4.84011 4.90826 4.91727 4.93877 5.04074 5.11742 5.16722 5.29040 5.41539 5.51556 5.70558 5.91207 6.26761 6.37836 6.58227 6.74810 7.07406 7.32399 8.87113 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.020278 B = 0.002409 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.488056 B =11619.540073 C =12146.485272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.013 3.987 3 Si 0.940 3.060 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.258 1.258 7 C -0.512 4.512 8 H 0.049 0.951 9 C 0.171 3.829 10 N -0.537 5.537 11 C 0.041 3.959 12 C 0.125 3.875 13 N -0.611 5.611 14 C 0.516 3.484 15 O -0.578 6.578 16 C -0.100 4.100 17 C -0.100 4.100 18 C -0.074 4.074 19 C -0.106 4.106 20 C -0.085 4.085 21 C -0.091 4.091 22 Cl -0.063 7.063 23 C 0.090 3.910 24 F -0.144 7.144 25 C 0.119 3.881 26 C 0.047 3.953 27 H 0.267 0.733 28 H -0.018 1.018 29 H 0.029 0.971 30 H 0.018 0.982 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.113 0.887 35 H 0.151 0.849 36 H 0.167 0.833 37 H 0.177 0.823 38 H 0.165 0.835 39 H 0.089 0.911 40 H 0.119 0.881 41 H 0.020 0.980 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.676 -21.684 8.433 28.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.185 4.185 3 Si 0.764 3.236 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.182 1.182 7 C -0.550 4.550 8 H 0.067 0.933 9 C 0.044 3.956 10 N -0.261 5.261 11 C -0.088 4.088 12 C 0.003 3.997 13 N -0.343 5.343 14 C 0.306 3.694 15 O -0.458 6.458 16 C -0.139 4.139 17 C -0.101 4.101 18 C -0.092 4.092 19 C -0.124 4.124 20 C -0.103 4.103 21 C -0.119 4.119 22 Cl -0.034 7.034 23 C 0.070 3.930 24 F -0.123 7.123 25 C -0.003 4.003 26 C -0.082 4.082 27 H 0.076 0.924 28 H -0.001 1.001 29 H 0.047 0.953 30 H 0.036 0.964 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.131 0.869 35 H 0.169 0.831 36 H 0.185 0.815 37 H 0.195 0.805 38 H 0.183 0.817 39 H 0.107 0.893 40 H 0.137 0.863 41 H 0.038 0.962 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 16.993 -21.723 7.994 28.715 hybrid contribution 0.372 2.384 0.850 2.558 sum 17.366 -19.339 8.844 27.455 Atomic orbital electron populations 1.70018 1.07860 1.28022 1.52488 1.25723 0.95506 1.02711 0.94546 0.85830 0.79212 0.79400 0.79175 1.19033 1.20846 1.18218 1.21204 0.90580 0.93527 1.49721 0.93280 1.19943 0.94679 0.86157 0.94828 1.61835 1.12029 1.17087 1.35164 1.22505 0.88228 0.97202 1.00901 1.21615 1.00201 0.89486 0.88444 1.48303 1.10584 1.45213 1.30234 1.20918 0.85174 0.79253 0.84057 1.90679 1.18701 1.66121 1.70286 1.20736 0.97749 1.00036 0.95418 1.19543 0.97301 0.96214 0.97064 1.21460 0.98190 0.91492 0.98041 1.21612 0.93361 1.02172 0.95281 1.21362 1.00699 0.90951 0.97308 1.21214 0.95174 0.96078 0.99400 1.98377 1.64072 1.82565 1.58363 1.17635 0.97202 0.79050 0.99151 1.91481 1.94626 1.35466 1.90707 1.22138 0.79803 0.95279 1.03108 1.22473 1.01589 0.94413 0.89735 0.92428 1.00065 0.95330 0.96363 0.89180 0.89382 0.89770 0.86942 0.83093 0.81519 0.80521 0.81719 0.89282 0.86274 0.96212 0.90106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.24 13.96 21.44 0.30 -56.94 16 2 C 0.01 0.74 5.47 84.65 0.46 1.20 16 3 Si 0.94 43.44 27.47 68.60 1.88 45.33 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.26 -11.39 6.54 99.48 0.65 -10.74 16 7 C -0.51 -28.31 8.96 25.60 0.23 -28.08 16 8 H 0.05 2.96 7.37 -2.91 -0.02 2.94 16 9 C 0.17 7.96 3.79 85.56 0.32 8.29 16 10 N -0.54 -20.91 4.62 -898.88 -4.15 -25.06 16 11 C 0.04 1.32 5.62 86.38 0.49 1.81 16 12 C 0.13 3.52 6.60 86.35 0.57 4.09 16 13 N -0.61 -16.00 3.00 -817.05 -2.45 -18.45 16 14 C 0.52 13.41 7.70 87.66 0.68 14.08 16 15 O -0.58 -19.20 15.49 -3.03 -0.05 -19.24 16 16 C -0.10 -1.78 3.97 29.10 0.12 -1.66 16 17 C -0.10 -1.92 4.38 -19.83 -0.09 -2.01 16 18 C -0.07 -0.96 9.68 22.27 0.22 -0.74 16 19 C -0.11 -1.09 10.04 22.27 0.22 -0.87 16 20 C -0.08 -1.16 9.83 22.28 0.22 -0.94 16 21 C -0.09 -1.88 6.33 22.36 0.14 -1.73 16 22 Cl -0.06 -1.31 28.62 -2.72 -0.08 -1.39 16 23 C 0.09 2.14 7.22 22.39 0.16 2.30 16 24 F -0.14 -4.12 16.14 44.97 0.73 -3.40 16 25 C 0.12 2.86 6.53 86.50 0.57 3.43 16 26 C 0.05 1.60 5.47 86.54 0.47 2.08 16 27 H 0.27 15.16 8.31 -92.70 -0.77 14.39 16 28 H -0.02 -0.88 7.18 -2.39 -0.02 -0.89 16 29 H 0.03 1.32 7.40 -2.38 -0.02 1.30 16 30 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.09 2.76 7.99 -2.38 -0.02 2.74 16 32 H 0.09 2.52 7.06 -2.39 -0.02 2.50 16 33 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.11 1.94 7.32 -2.38 -0.02 1.93 16 35 H 0.15 1.47 7.90 -2.39 -0.02 1.45 16 36 H 0.17 1.15 8.06 -2.91 -0.02 1.13 16 37 H 0.18 0.48 8.06 -2.91 -0.02 0.46 16 38 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 39 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.12 1.98 6.02 -2.39 -0.01 1.96 16 41 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.08 3.14 6.67 -2.39 -0.02 3.12 16 Total: -1.00 -73.96 361.59 1.94 -72.02 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: 0.99 Total: 5.91 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: 4.78 Total: 1.23 kcal Atomic # 7 Polarization: -94.15 SS G_CDS: -6.31 Total: -100.46 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.05 Total: -19.24 kcal Atomic # 9 Polarization: -4.12 SS G_CDS: 0.73 Total: -3.40 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.88 Total: 45.33 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -0.08 Total: -1.39 kcal Total: -73.96 1.94 -72.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602202226.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.775 kcal (2) G-P(sol) polarization free energy of solvation -73.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds